mRNA_H-elongata_contig84723.16071.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84723.16071.1
Unique NamemRNA_H-elongata_contig84723.16071.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84723.16071.1 vs. uniprot
Match: D7G1B4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B4_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.510e-34
Identity = 56/78 (71.79%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   10 TEQTDVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAESHRRVTIVEGFWQTALPALGRFDAIFFDDFPV 243
            TE++ VLEIG+G GYSADRIQE  PRSHT++EPDPVVL RLR WA +   V IVEGFWQTAL  LG FDA+FFDDFP+
Sbjct:  104 TEESRVLEIGYGIGYSADRIQEFSPRSHTIIEPDPVVLARLRGWAAARPGVRIVEGFWQTALATLGEFDAVFFDDFPL 181          
BLAST of mRNA_H-elongata_contig84723.16071.1 vs. uniprot
Match: A0A6H5KGP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP7_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.120e-33
Identity = 56/78 (71.79%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   10 TEQTDVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAESHRRVTIVEGFWQTALPALGRFDAIFFDDFPV 243
            TE++ VLEIG+G GYSADRIQE  PRSHT++EPDPVVL RLR WA +   V IVEGFWQTAL  LG FDA+FFDDFP+
Sbjct:   29 TEESRVLEIGYGIGYSADRIQEFSPRSHTIIEPDPVVLARLRGWAAARPGVRIVEGFWQTALATLGEFDAVFFDDFPL 106          
BLAST of mRNA_H-elongata_contig84723.16071.1 vs. uniprot
Match: A0A812X2Q9_9DINO (Gamt protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812X2Q9_9DINO)

HSP 1 Score: 113 bits (282), Expect = 3.120e-27
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 LHPTEQTDVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAESHRRVTIVEGFWQTALPALGRFDAIFFDDF 237
            L  T  TDVLE+GFGCGYSA RIQE +PRSHT++E   VVLERL+ WA     V IVEG WQ  LP LGRFD IFFDD+
Sbjct:  183 LKVTSDTDVLEVGFGCGYSASRIQEFKPRSHTIIECSEVVLERLKHWAADKPNVHIVEGTWQQRLPELGRFDRIFFDDY 261          
BLAST of mRNA_H-elongata_contig84723.16071.1 vs. uniprot
Match: A0A1Q9E4R3_SYMMI (Guanidinoacetate N-methyltransferase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E4R3_SYMMI)

HSP 1 Score: 113 bits (282), Expect = 3.190e-27
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 LHPTEQTDVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAESHRRVTIVEGFWQTALPALGRFDAIFFDDF 237
            L  T  TDVLE+GFGCGYSA RIQE +PRSHT++E   VVLERL+ WA     V IVEG WQ  LP LGRFD IFFDD+
Sbjct: 2309 LKVTSDTDVLEVGFGCGYSASRIQEFKPRSHTIIECSEVVLERLKHWAADKPNVHIVEGTWQQRLPELGRFDRIFFDDY 2387          
BLAST of mRNA_H-elongata_contig84723.16071.1 vs. uniprot
Match: A0A812J552_9DINO (Gamt protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812J552_9DINO)

HSP 1 Score: 112 bits (281), Expect = 4.340e-27
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 LHPTEQTDVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAESHRRVTIVEGFWQTALPALGRFDAIFFDDF 237
            L  T  TDVLE+GFGCGYSA RIQE +PRSHT++E   VVLERL+ WA     V IVEG WQ  LP LGRFD IFFDD+
Sbjct: 2316 LKVTADTDVLEVGFGCGYSASRIQEFKPRSHTIIECSEVVLERLKHWAADKPNVHIVEGTWQQRLPELGRFDRIFFDDY 2394          
BLAST of mRNA_H-elongata_contig84723.16071.1 vs. uniprot
Match: A0A485KL38_9STRA (Aste57867_8776 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL38_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.580e-26
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   10 TEQTDVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAESHRRVTIVEGFWQTALPALGRFDAIFFDDFPV 243
            T   DVLEIGFG GYSA RIQ   PRSHT++E DPV L++L AWA   + VTIV G WQ+ L +LG FD IFFDD+P+
Sbjct:   44 TTTCDVLEIGFGLGYSASRIQSFAPRSHTIIECDPVCLKQLEAWAADRKNVTIVAGTWQSMLASLGAFDCIFFDDYPL 121          
BLAST of mRNA_H-elongata_contig84723.16071.1 vs. uniprot
Match: A0A7W1U1G4_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1U1G4_9BACT)

HSP 1 Score: 107 bits (266), Expect = 3.630e-26
Identity = 50/78 (64.10%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   22 DVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAESHRRVTIVEGFWQTALPALGRFDAIFFDDF-PVSMA 252
            DVLEIGFG GYSA+ IQ+ +P+SHT+VE DPVVLE+ +AWA++H  V IVEG WQ  L +LG+FD IFFDD+ P+S A
Sbjct:   47 DVLEIGFGLGYSANCIQKFKPKSHTIVECDPVVLEKAKAWAKTHPGVKIVEGTWQEKLDSLGKFDTIFFDDYSPLSNA 124          
BLAST of mRNA_H-elongata_contig84723.16071.1 vs. uniprot
Match: A0A812Q0V8_9DINO (Gamt-a protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812Q0V8_9DINO)

HSP 1 Score: 108 bits (271), Expect = 7.580e-26
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 LHPTEQTDVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAESHRRVTIVEGFWQTALPALGRFDAIFFDDF 237
            L     TDVLE+GFGCGYSA RIQE +PRSHT++E   VVLERL+ WA     V IVEG WQ  LP LG+FD IFFDD+
Sbjct:  362 LGVNSDTDVLEVGFGCGYSASRIQEYKPRSHTIIECSEVVLERLKHWAADKPNVHIVEGTWQKRLPELGQFDRIFFDDY 440          
BLAST of mRNA_H-elongata_contig84723.16071.1 vs. uniprot
Match: UPI001BBE6851 (Uncharacterized protein n=1 Tax=Simkania sp. TaxID=34094 RepID=UPI001BBE6851)

HSP 1 Score: 105 bits (263), Expect = 8.720e-26
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   22 DVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAESHRRVTIVEGFWQTALPALGRFDAIFFDDFPVSMA 252
            DVLE+GFG GYS+ RIQ   P++HT++E DP V  R R WA+ +  +TI+E  WQ ALPALGRFDA+FFDD+P+  A
Sbjct:   46 DVLEVGFGLGYSSTRIQYYHPKTHTIIEYDPTVAARAREWAKQYVGITIIEKTWQEALPALGRFDAVFFDDYPLEAA 122          
BLAST of mRNA_H-elongata_contig84723.16071.1 vs. uniprot
Match: A0A7S0NTQ9_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NTQ9_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 2.130e-25
Identity = 50/86 (58.14%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 LHPTEQTDVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAESHRRVTIVEGFWQTALPALGRFDAIFFDDFPVSMASN 258
            L  T   DVLE+GFGC YSADR+Q   PRSHT+VE    VLERLR WA     V +VEG WQ  LP LG FD IFFDDF  +  S 
Sbjct:   27 LRITTDCDVLEVGFGCAYSADRVQRASPRSHTIVECAAPVLERLREWARDKPSVRVVEGTWQARLPELGDFDRIFFDDFGAAGMSE 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84723.16071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1B4_ECTSI4.510e-3471.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGP7_9PHAE1.120e-3371.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812X2Q9_9DINO3.120e-2765.82Gamt protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
A0A1Q9E4R3_SYMMI3.190e-2765.82Guanidinoacetate N-methyltransferase n=1 Tax=Symbi... [more]
A0A812J552_9DINO4.340e-2765.82Gamt protein n=1 Tax=Symbiodinium necroappetens Ta... [more]
A0A485KL38_9STRA2.580e-2661.54Aste57867_8776 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7W1U1G4_9BACT3.630e-2664.10Class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
A0A812Q0V8_9DINO7.580e-2663.29Gamt-a protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
UPI001BBE68518.720e-2658.44Uncharacterized protein n=1 Tax=Simkania sp. TaxID... [more]
A0A7S0NTQ9_9EUKA2.130e-2558.14Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84723contigH-elongata_contig84723:666..929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue7.6e-26
Seed eggNOG ortholog2880.D7G1B4
KEGG rclassRC00003,RC00614
KEGG koko:K00542
KEGG ReactionR01883
KEGG Pathwayko00260,ko00330,ko01100,map00260,map00330,map01100
KEGG ModuleM00047
EggNOG free text desc.protein-arginine N5-methyltransferase activity
EggNOG OGsKOG1709@1,KOG1709@2759
EC2.1.1.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931251.115627-CDS-H-elongata_contig84723:665..9291622931251.115627-CDS-H-elongata_contig84723:665..929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84723 666..929 +
1691679760.080557-CDS-H-elongata_contig84723:665..9291691679760.080557-CDS-H-elongata_contig84723:665..929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84723 666..929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84723.16071.1prot_H-elongata_contig84723.16071.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84723 666..929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84723.16071.1

>prot_H-elongata_contig84723.16071.1 ID=prot_H-elongata_contig84723.16071.1|Name=mRNA_H-elongata_contig84723.16071.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
LHPTEQTDVLEIGFGCGYSADRIQELRPRSHTVVEPDPVVLERLRAWAES
HRRVTIVEGFWQTALPALGRFDAIFFDDFPVSMASNP*
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mRNA from alignment at H-elongata_contig84723:666..929+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84723.16071.1 ID=mRNA_H-elongata_contig84723.16071.1|Name=mRNA_H-elongata_contig84723.16071.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=264bp|location=Sequence derived from alignment at H-elongata_contig84723:666..929+ (Himanthalia elongata Himel1 dioecious)
CTTCACCCGACAGAGCAGACTGACGTTCTCGAGATTGGCTTCGGGTGCGG GTACTCGGCCGACCGCATCCAGGAGCTGAGGCCGCGATCGCACACCGTGG TGGAGCCCGATCCGGTCGTGCTCGAGCGGCTGAGAGCGTGGGCGGAATCC CATCGAAGAGTGACCATCGTGGAGGGATTCTGGCAGACCGCTCTGCCAGC GCTTGGACGATTCGACGCTATATTTTTCGACGACTTTCCCGTGAGCATGG CGTCGAATCCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig84723:666..929+

>mRNA_H-elongata_contig84723.16071.1 ID=mRNA_H-elongata_contig84723.16071.1|Name=mRNA_H-elongata_contig84723.16071.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig84723:666..929+ (Himanthalia elongata Himel1 dioecious)
CTTCACCCGACAGAGCAGACTGACGTTCTCGAGATTGGCTTCGGGTGCGG
GTACTCGGCCGACCGCATCCAGGAGCTGAGGCCGCGATCGCACACCGTGG
TGGAGCCCGATCCGGTCGTGCTCGAGCGGCTGAGAGCGTGGGCGGAATCC
CATCGAAGAGTGACCATCGTGGAGGGATTCTGGCAGACCGCTCTGCCAGC
GCTTGGACGATTCGACGCTATATTTTTCGACGACTTTCCCGTGAGCATGG
CGTCGAATCCGTAGCTTCACCCGACAGAGCAGACTGACGTTCTCGAGATT
GGCTTCGGGTGCGGGTACTCGGCCGACCGCATCCAGGAGCTGAGGCCGCG
ATCGCACACCGTGGTGGAGCCCGATCCGGTCGTGCTCGAGCGGCTGAGAG
CGTGGGCGGAATCCCATCGAAGAGTGACCATCGTGGAGGGATTCTGGCAG
ACCGCTCTGCCAGCGCTTGGACGATTCGACGCTATATTTTTCGACGACTT
TCCCGTGAGCATGGCGTCGAATCCGTAG
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