mRNA_H-elongata_contig84405.16055.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84405.16055.1
Unique NamemRNA_H-elongata_contig84405.16055.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84405.16055.1 vs. uniprot
Match: A0A6H5JAK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK7_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 1.400e-73
Identity = 111/157 (70.70%), Postives = 127/157 (80.89%), Query Frame = 1
Query:    1 YKGPMDCAMKLVREHGARSLYRGASVTVIRDTPAMGLYFASYEATKKWMEKRWCFSEQASSCLAGGLAGALSWAVIYPFDVVKSIQQAATDPLDPSTRSVYARFRGVYNSVGGGVPGARRLFRGLGTTLVRAVPVNAAIFPTYEWTVRVLNKAFPPS 471
            Y+GP+DCAM +    G R L+RG+  T IRDTPAMGLYFASYEA K  +E RW F EQASS  AGGLAGALSW V YPFDVVKS+QQAA DP+DP+TRS+ A FR VYN+ GGG+PG  R FRG+ TT+VRAVPVNAAIFPT+EWTV+VLNKAFP S
Sbjct:  188 YRGPVDCAMSIFNTQGVRGLFRGSPATAIRDTPAMGLYFASYEAVKDRLESRWGFGEQASSFWAGGLAGALSWFVSYPFDVVKSVQQAAADPMDPNTRSMTACFRHVYNTAGGGIPGVSRFFRGVSTTVVRAVPVNAAIFPTFEWTVKVLNKAFPSS 344          
BLAST of mRNA_H-elongata_contig84405.16055.1 vs. uniprot
Match: K0RM31_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RM31_THAOC)

HSP 1 Score: 126 bits (317), Expect = 3.240e-32
Identity = 75/164 (45.73%), Postives = 99/164 (60.37%), Query Frame = 1
Query:    1 YKGPMDCAMKLVREHGA-RSLYRGASVTVIRDTPAMGLYFASYEATKKWMEKRWCFSEQA-----------SSCLAGGLAGALSWAVIYPFDVVKSIQQAATDPLDPST-RSVYARFRGVYNSVGGGVPGARRLFRGLGTTLVRAVPVNAAIFPTYEWTVRVLN 453
            YKGP+D A+ +VR++G  R L+RG  VT+ R+TPA GLYFA+Y+  K  +E      E++           +S LAGGL+GAL+W V+YPFDV+KS  Q  T PL+ +  RS+      +    G G      +FRGLG TLVRA PVNA IFP YEW +  L 
Sbjct:  192 YKGPVDAAVSIVRQYGVTRGLFRGMGVTLWRETPAFGLYFATYDTIKDRVESFLREQEESHPIPAHLHAWSASALAGGLSGALTWFVVYPFDVIKSRIQ--TSPLEKNMQRSMLTTASDIIREHGAG-----HMFRGLGVTLVRAFPVNAIIFPVYEWVLLQLG 348          
BLAST of mRNA_H-elongata_contig84405.16055.1 vs. uniprot
Match: A0A835ZAK8_9STRA (Solute carrier family 25 member 45-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK8_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.970e-31
Identity = 69/144 (47.92%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 YKGPMDCAMKLVREHGARSLYRGASVTVIRDTPAMGLYFASYEATKKWMEKRWCFSEQASSCLAGGLAGALSWAVIYPFDVVKSIQQAATDPLDPSTRSVYARFRGVYNSVGGGVPGARRLFRGLGTTLVRAVPVNAAIFPTYE 432
            YKG +DCA +LVR  G RSL  G + TV R+ PA G+YF+ YE  K  ++++    E  S+  AGG+AG  SW  I P DV+KS QQA  D       S+ A  RG+Y        G R  FRGLGT +VRA PVNA IFP YE
Sbjct:  136 YKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALLKEKGA-KEGVSAFAAGGIAGCSSWFAIAPLDVIKSRQQAMQDWRSKEASSLVACARGMYRE-----GGHRIFFRGLGTIMVRAFPVNAVIFPIYE 273          
BLAST of mRNA_H-elongata_contig84405.16055.1 vs. uniprot
Match: B8C2E7_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2E7_THAPS)

HSP 1 Score: 120 bits (301), Expect = 2.310e-30
Identity = 72/165 (43.64%), Postives = 102/165 (61.82%), Query Frame = 1
Query:    1 YKGPMDCAMKLVREHGA-RSLYRGASVTVIRDTPAMGLYFASYEATKKWMEKRWCFSEQ-----------ASSCLAGGLAGALSWAVIYPFDVVKSIQQAATDPLDPSTRSVYARFRGVYNSVGGGV--PGARRLFRGLGTTLVRAVPVNAAIFPTYEWTVRVLN 453
            YKGP+D  + +V+++G  R LYRG  VT+ R+TPA G+YFA+Y++ K  +E      ++           A+S LAGG++GAL+WA+IYPFDV+KS  Q  T PL+   +      +G++      V   G + +FRGLG TLVRA PVNA IFP YE+T+  L 
Sbjct:  132 YKGPVDAGVSIVKQYGLFRGLYRGMGVTLWRETPAFGMYFATYDSIKARVETLLEDKDEHHPIPSHAHAWAASALAGGISGALTWAIIYPFDVIKSRMQ--TGPLERHLQ------KGMWTVAKDIVVQQGWKYMFRGLGVTLVRAFPVNAIIFPVYEFTLMQLG 288          
BLAST of mRNA_H-elongata_contig84405.16055.1 vs. uniprot
Match: D8LK82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK82_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.210e-29
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1
Query:  253 IQQAATDPLDPSTRSVYARFRGVYNSVGGGVPGARRLFRGLGTTLVRAVPVNAAIFPTYEWTVRVLNKAFPPS 471
            + QAA DP+DP+TRS+ A FR VY + GGGVPG RR FRG+ TT+VRAVPVNAAIFPT+EWTV+VLNKAFP S
Sbjct:   62 VGQAAADPMDPNTRSMTACFRHVYKTAGGGVPGVRRFFRGVSTTVVRAVPVNAAIFPTFEWTVKVLNKAFPSS 134          
BLAST of mRNA_H-elongata_contig84405.16055.1 vs. uniprot
Match: A0A7S4HIS7_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HIS7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.020e-28
Identity = 69/175 (39.43%), Postives = 95/175 (54.29%), Query Frame = 1
Query:    1 YKGPMDCAMKLVREHGARSLYRGASVTVIRDTPAMGLYFASYEATKKWMEKRWCFSEQ---------------------ASSCLAGGLAGALSWAVIYPFDVVKS-IQQAATDPLDPSTRSVYARFRGVYNSVGGGVPGARRLFRGLGTTLVRAVPVNAAIFPTYEWTVRVLNKA 459
            Y+GP+D   K+V  HG R LYRG   T +R+ PA GLYFA+Y+  K  + + +   ++                     A+S +AGG++G+ +WA+IYP DV+KS IQ A  D   PS  S+    R +         G R +FRGLG TL RA PVN  IFP YE+T+  L +A
Sbjct:  219 YRGPLDAVNKIVSGHGVRGLYRGWWCTTVREVPAFGLYFATYDNIKGRINRMFEKDKEDGNGSGEAGNRRGGTHHSHTWAASAVAGGISGSFTWAIIYPVDVIKSRIQTAPLDCEAPSKISMLGVGRDIVRE-----NGWRYMFRGLGVTLARAFPVNGIIFPVYEFTLMKLTQA 388          
BLAST of mRNA_H-elongata_contig84405.16055.1 vs. uniprot
Match: A0A1I7Z7D7_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7Z7D7_9BILA)

HSP 1 Score: 114 bits (284), Expect = 1.740e-27
Identity = 67/152 (44.08%), Postives = 87/152 (57.24%), Query Frame = 1
Query:    1 YKGPMDCAMKLVREHGARSLYRGASVTVIRDTPAMGLYFASYEATKKWMEKRWCFSEQASSCL--AGGLAGALSWAVIYPFDVVKSIQQAATDPLDPSTRSVYARFRGVYNSVGGGVPGARRLFRGLGTTLVRAVPVNAAIFPTYEWTVRVL 450
            Y+ P  CA +LV +HG+R+L+RG   T++RD PA+G+YFASYE   + + +        S+ L  AGG AG LSW   YP DV+K+  QA       S RS     R  Y        G R  +RGLG+TL+RA P NAA F T EWT R+L
Sbjct:  138 YRSPYHCARQLVDKHGSRTLFRGMMATIVRDCPAIGIYFASYEWIARKLSRDGTMEALTSAQLLTAGGAAGMLSWLFNYPSDVIKTRFQACD-----SYRSYGDVIRRTYAE-----NGVRTFYRGLGSTLLRAFPTNAATFFTVEWTYRIL 279          
BLAST of mRNA_H-elongata_contig84405.16055.1 vs. uniprot
Match: A0A4V5ZXV3_STECR (Uncharacterized protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4V5ZXV3_STECR)

HSP 1 Score: 111 bits (277), Expect = 1.570e-26
Identity = 69/152 (45.39%), Postives = 83/152 (54.61%), Query Frame = 1
Query:    1 YKGPMDCAMKLVREHGARSLYRGASVTVIRDTPAMGLYFASYEATKKWMEKRWCFSEQASSCL--AGGLAGALSWAVIYPFDVVKSIQQAATDPLDPSTRSVYARFRGVYNSVGGGVPGARRLFRGLGTTLVRAVPVNAAIFPTYEWTVRVL 450
            Y+ P  CA  LV +HG R L+RG   TVIRD PA G+YFASYE   + + K        S+ L  AGG AG LSW   YP DV+K+  QA       S +S     R  Y        G R  +RGLG+TL+RA P NAA F T EWT R+L
Sbjct:  130 YRSPYHCAKTLVDQHGKRFLFRGMLATVIRDCPAFGIYFASYEWMARKLSKDGTMESLTSAQLLFAGGAAGMLSWLSNYPTDVIKTRFQACD-----SYKSYGDVIRRTYAE-----NGIRTFYRGLGSTLLRAFPTNAATFFTVEWTYRIL 271          
BLAST of mRNA_H-elongata_contig84405.16055.1 vs. uniprot
Match: A0A4V1J523_9FUNG (Mitochondrial carrier domain-containing protein (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4V1J523_9FUNG)

HSP 1 Score: 110 bits (275), Expect = 1.980e-26
Identity = 66/165 (40.00%), Postives = 89/165 (53.94%), Query Frame = 1
Query:    1 YKGPMDCAMKLVREHGARSLYRGASVTVIRDTPAMGLYFASYEATKKWMEKRWCFSEQASS-------------CLAGGLAGALSWAVIYPFDVVKSIQQAATDPLDPSTRSVYARFRGVYNSVGGGVPGARRLF-RGLGTTLVRAVPVNAAIFPTYEWTVRVLN 453
            Y G  +C ++  RE G R LYRG S+T IRD P+ G YF +YE TK+ + +R      A+              CLAGG+AG  +W   YP D+VKS  Q+     +PS  +  A FR ++    G  PG  R+F RG G TL RA P NAA F  YEW ++ ++
Sbjct:  145 YTGVFNCGVRTFREQGLRGLYRGFSITFIRDVPSFGCYFGAYELTKQLLARRRSPETFATPGAGPHYTNTGLELCLAGGVAGIAAWLFCYPQDIVKSRMQS-----NPSYPNTLACFRILWKEAQG--PGNWRVFFRGFGPTLARAFPANAATFVAYEWALKHMS 302          
BLAST of mRNA_H-elongata_contig84405.16055.1 vs. uniprot
Match: A0A485L7M8_9STRA (Aste57867_16706 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7M8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.480e-26
Identity = 60/153 (39.22%), Postives = 86/153 (56.21%), Query Frame = 1
Query:    1 YKGPMDCAMKLVREHG--ARSLYRGASVTVIRDTPAMGLYFASYEATKKWMEKRWCFSEQASSCLAGGLAGALSWAVIYPFDVVKSIQQAATDPLDPSTRSVYARFRGVYNSVGGGVPGARRLFRGLGTTLVRAVPVNAAIFPTYEWTVRVLN 453
            +  P+DC M+ +  HG  A+ L++G  VT++RDT + G+YF  YE  ++W           S  +AGGLAG +SW ++YP DVVKS+ Q          R +  + R + +     V GA    +GLGTT++RA PVNA  F  YEWTV  L+
Sbjct:  154 FANPLDC-MRYLSHHGGGAKGLFQGLRVTLLRDTGSYGVYFGVYEGMRRWFAS----DSTPSLLVAGGLAGVVSWTIVYPIDVVKSVIQTMPPTATADERRILVQARRLVD-----VHGASIFTKGLGTTMLRAFPVNAVTFYFYEWTVAALS 296          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84405.16055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAK7_9PHAE1.400e-7370.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0RM31_THAOC3.240e-3245.73Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A835ZAK8_9STRA5.970e-3147.92Solute carrier family 25 member 45-like protein (F... [more]
B8C2E7_THAPS2.310e-3043.64Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
D8LK82_ECTSI2.210e-2972.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4HIS7_9STRA6.020e-2839.43Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A1I7Z7D7_9BILA1.740e-2744.08Uncharacterized protein n=1 Tax=Steinernema glaser... [more]
A0A4V5ZXV3_STECR1.570e-2645.39Uncharacterized protein n=1 Tax=Steinernema carpoc... [more]
A0A4V1J523_9FUNG1.980e-2640.00Mitochondrial carrier domain-containing protein (F... [more]
A0A485L7M8_9STRA2.480e-2639.22Aste57867_16706 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84405contigH-elongata_contig84405:348..1043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue3.3e-24
Seed eggNOG ortholog159749.K0RM31
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGs2XBX6@2836,KOG0762@1,KOG0762@2759
COG Functional cat.C
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-16_002390.1
Exons2
Model size474
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84405.16055.1prot_H-elongata_contig84405.16055.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84405 360..1043 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931249.415159-UTR-H-elongata_contig84405:347..3591622931249.415159-UTR-H-elongata_contig84405:347..359Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84405 348..359 +
1691679759.298445-UTR-H-elongata_contig84405:347..3591691679759.298445-UTR-H-elongata_contig84405:347..359Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84405 348..359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931249.438477-CDS-H-elongata_contig84405:359..6081622931249.438477-CDS-H-elongata_contig84405:359..608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84405 360..608 +
1691679759.30957-CDS-H-elongata_contig84405:359..6081691679759.30957-CDS-H-elongata_contig84405:359..608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84405 360..608 +
1622931249.462251-CDS-H-elongata_contig84405:830..10431622931249.462251-CDS-H-elongata_contig84405:830..1043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84405 831..1043 +
1691679759.3184617-CDS-H-elongata_contig84405:830..10431691679759.3184617-CDS-H-elongata_contig84405:830..1043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84405 831..1043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84405.16055.1

>prot_H-elongata_contig84405.16055.1 ID=prot_H-elongata_contig84405.16055.1|Name=mRNA_H-elongata_contig84405.16055.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
MDCAMKLVREHGARSLYRGASVTVIRDTPAMGLYFASYEATKKWMEKRWC
FSEQASSCLAGGLAGALSWAVIYPFDVVKSIQQAATDPLDPSTRSVYARF
RGVYNSVGGGVPGARRLFRGLGTTLVRAVPVNAAIFPTYEWTVRVLNKAF
PPS*
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mRNA from alignment at H-elongata_contig84405:348..1043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84405.16055.1 ID=mRNA_H-elongata_contig84405.16055.1|Name=mRNA_H-elongata_contig84405.16055.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=696bp|location=Sequence derived from alignment at H-elongata_contig84405:348..1043+ (Himanthalia elongata Himel1 dioecious)
TACAAGGGCCCCATGGACTGCGCAATGAAGCTCGTCAGGGAGCATGGCGC AAGATCGCTGTACCGCGGTGCTTCGGTGACGGTGATAAGAGATACCCCGG CCATGGGCCTGTATTTCGCGTCGTATGAGGCGACAAAGAAGTGGATGGAA AAGCGGTGGTGCTTCAGCGAGCAGGCTTCTTCTTGTTTGGCCGGGGGCCT GGCGGGGGCGCTCAGCTGGGCGGTTATATATCCGTTTGACGTGGTGAAAT CAATACAACAGGTGCGAGCGCCCGCGCTGTTGAGAAACGGTTGATGAAAA AGACAACTGGTGTTCACCGCTCATTACCGGGGATAGTTGCCTATATTATG CCCCCCACTCCCCGAGACGATCGAAATGGACCGACGAAATGCATGCACGG CGCTCGCTGGCACTTCCCATTTTGTCTCTCCCTCCCTCCCTCCCCCCCTC TGAAATTTTGAACGAAACTCCGTCTACGCGTAGGCCGCGACCGATCCCCT GGACCCGTCGACCCGGAGCGTCTACGCCCGCTTCCGCGGCGTCTATAATT CCGTTGGTGGCGGCGTGCCCGGCGCGCGGCGCCTGTTCCGAGGGCTCGGC ACCACGCTGGTGCGCGCCGTCCCTGTCAACGCTGCGATTTTCCCGACGTA CGAGTGGACGGTCAGGGTTCTAAACAAGGCCTTTCCTCCATCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig84405:348..1043+

>mRNA_H-elongata_contig84405.16055.1 ID=mRNA_H-elongata_contig84405.16055.1|Name=mRNA_H-elongata_contig84405.16055.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig84405:348..1043+ (Himanthalia elongata Himel1 dioecious)
ATGGACTGCGCAATGAAGCTCGTCAGGGAGCATGGCGCAAGATCGCTGTA
CCGCGGTGCTTCGGTGACGGTGATAAGAGATACCCCGGCCATGGGCCTGT
ATTTCGCGTCGTATGAGGCGACAAAGAAGTGGATGGAAAAGCGGTGGTGC
TTCAGCGAGCAGGCTTCTTCTTGTTTGGCCGGGGGCCTGGCGGGGGCGCT
CAGCTGGGCGGTTATATATCCGTTTGACGTGGTGAAATCAATACAACAGA
TGGACTGCGCAATGAAGCTCGTCAGGGAGCATGGCGCAAGATCGCTGTAC
CGCGGTGCTTCGGTGACGGTGATAAGAGATACCCCGGCCATGGGCCTGTA
TTTCGCGTCGTATGAGGCGACAAAGAAGTGGATGGAAAAGCGGTGGTGCT
TCAGCGAGCAGGCTTCTTCTTGTTTGGCCGGGGGCCTGGCGGGGGCGCTC
AGCTGGGCGGTTATATATCCGTTTGACGTGGTGAAATCAATACAACAGGC
CGCGACCGATCCCCTGGACCCGTCGACCCGGAGCGTCTACGCCCGCTTCC
GCGGCGTCTATAATTCCGTTGGTGGCGGCGTGCCCGGCGCGCGGCGCCTG
TTCCGAGGGCTCGGCACCACGCTGGTGCGCGCCGTCCCTGTCAACGCTGC
GATTTTCCCGACGTACGAGTGGACGGTCAGGGTTCTAAACAAGGCCTTTC
CTCCATCGTAGGCCGCGACCGATCCCCTGGACCCGTCGACCCGGAGCGTC
TACGCCCGCTTCCGCGGCGTCTATAATTCCGTTGGTGGCGGCGTGCCCGG
CGCGCGGCGCCTGTTCCGAGGGCTCGGCACCACGCTGGTGCGCGCCGTCC
CTGTCAACGCTGCGATTTTCCCGACGTACGAGTGGACGGTCAGGGTTCTA
AACAAGGCCTTTCCTCCATCGTAG
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