mRNA_H-elongata_contig8424.16039.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8424.16039.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE) HSP 1 Score: 119 bits (297), Expect = 7.050e-26 Identity = 67/153 (43.79%), Postives = 90/153 (58.82%), Query Frame = 1
Query: 547 NGGRLSYTGPTKFVLNSATKSGGVLGSGAFSAISNYEESLFFVRGPTSFENNTAGGNGGGIALLGMLNVEFEATEVTFYGNTADVAGGAIFISGTGVAPILSDMTFTSNSAKVGGAVYAVASGVELTEGNANPTTFARCSFVGNKAVTTGGAV 1005
NG +S TG TK V N A GG +GS A ++ + E+S + GPT+F NNT+G NGG +ALLG L++ E +F N+AD+AGG +++S T + P SD+ F SN A VGGA+ PTTF+RC F N+ TGGAV
Sbjct: 289 NGSYVSSTGDTKVVRNGALVDGGAVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGELSISVNTEESSFVDNSADLAGGTVYVSDTAIGPTFSDVIFDSNFAHVGGALL--------------PTTFSRCRFTYNRETATGGAV 427
BLAST of mRNA_H-elongata_contig8424.16039.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 117 bits (292), Expect = 3.600e-25 Identity = 71/137 (51.82%), Postives = 88/137 (64.23%), Query Frame = 1
Query: 610 GGVLGSGAFSAISNYEESLFFVRGPTSFENNTAGGNGGGIALLGMLNVEFEATEVTFYGNTADVAGGAIFISGTGVAPILSDMTFTSNSAKVGGAVYAVASGVELTEGNA-----NPTTFARCSFVGNKAVTTGGAV 1005
GGV+GS + ++SN + S + G T+F NNT G NGG +ALLG L V V+F GN A+VAGGA+F+SGTG PI + F SNSA+VGGAV V SG L E NA NPTTF C F+ N+A TGGA+
Sbjct: 537 GGVIGSFSTDSVSN-QGSTLVMNGTTAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSG-NLKE-NADISPPNPTTFDHCHFIDNRATATGGAI 670
BLAST of mRNA_H-elongata_contig8424.16039.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 114 bits (285), Expect = 3.350e-24 Identity = 64/133 (48.12%), Postives = 87/133 (65.41%), Query Frame = 1
Query: 619 LGSGAFSAISNYEESLFFVRGPTSFENNTAGGNGGGIALLGMLNVEFEATEVTFYGNTADVAGGAIFISGTGVAPILSDMTFTSNSAKVGGAVYAVASGVELTEGNAN----PTTFARCSFVGNKAVTTGGAV 1005
+GS A ++ + E+S + GPT+F NNT+G NGG +ALLG L++ E F N+AD+AGGA+++S T + P SD+ F SNSA+VGGAV A+ SG +G N PTTF+RC F N+A TGGAV
Sbjct: 2216 VGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTEETNFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSALGSG--NVKGGENDQLLPTTFSRCRFTFNRATATGGAV 2346
BLAST of mRNA_H-elongata_contig8424.16039.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 111 bits (277), Expect = 3.110e-23 Identity = 62/133 (46.62%), Postives = 88/133 (66.17%), Query Frame = 1
Query: 619 LGSGAFSAISNYEESLFFVRGPTSFENNTAGGNGGGIALLGMLNVEFEATEVTFYGNTADVAGGAIFISGTGVAPILSDMTFTSNSAKVGGAVYAVASGVELTEGNAN----PTTFARCSFVGNKAVTTGGAV 1005
+GS A ++ + E+S + GPT+F NNT+G NGG +ALLG L++ E +F N+A++AGGA+++S T + P SD+ F SNSA+VGGAV ++ SG +G N PTTF+RC F N+A TGGAV
Sbjct: 303 VGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSG--NVKGGENDQLLPTTFSRCRFTFNRATATGGAV 433
BLAST of mRNA_H-elongata_contig8424.16039.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 101 bits (252), Expect = 6.050e-20 Identity = 70/210 (33.33%), Postives = 106/210 (50.48%), Query Frame = 1
Query: 472 SSVYWSQAAS--FTGNQAYRGGVLYIHNGGRLSYTGPTKFVLNSATK---------------------------SGGVLGSGAFSAISNYEESLFFVRGPTSFENNTAGGNGGGIALLGMLNVEFEATEVTFYGNTADVAGGAIFISGTGVAPILSDMTFTSNSAKVGGAVYAVASGVELTEGNANP---TTFARCSFVGNKAVTTGGAV 1005
S++YWS + G+ ++ GG LY+ +G ++++G T+ GG + S ++ + N ES + G T+F NNT G NGG +AL +++ +V+F GN+A AGGA+F+SG G+ P SD++F SN A+VGGA SG + G +P T F RC F+ N A T+GGAV
Sbjct: 633 STIYWSGGLTRFIGGSSSFVGGALYV-SGSEVTWSGGTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGAMMSPSYDSEYNPLESSLVINGTTTFFNNTCGENGGSLALFDACSLDINTADVSFTGNSAGFAGGAVFVSGAGIGPTFSDVSFISNFAQVGGAASVFGSGND--RGMLSPIIPTKFDRCRFIDNVATTSGGAV 839
BLAST of mRNA_H-elongata_contig8424.16039.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.090e-19 Identity = 76/192 (39.58%), Postives = 103/192 (53.65%), Query Frame = 1
Query: 466 VGSSVYWSQAASFTGNQAY---------RGGVLYIHNGGRLSYTGPTKFVLNSA-TKSGGVLGSGAFSAISNYEESLFFVRGPTSFENNTAGGNGGGIALL--GMLNVEFEATEVTFYGNTADVAGGAIFISGTGVAPILSDMTFTSNSAKVGGAVYAVASGVELTEGNANPTTFARCSFVGNKAVTTGGAV 1005
+ S + W+ A F GN A GG + + +S+TG T F N A ++ GG+ S A I S + T F NNTA NG I L LN F +++F GN+A VAGGAIF+SG PI +++ FTSN A++GGAV + G+E + G NPTTF RC FV N+ +TGGA+
Sbjct: 575 IDSYISWAGTAEFNGNSALSLVNSTLGEEGGAASVLSC-NVSWTGETIFTSNVAQSEGGGITASSANDGIL----SNITMNATTIFFNNTAATNGRAIVLFEDAALNSIFNM-DISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSSFRCGIEPS-GVDNPTTFDRCRFVDNQGASTGGAI 759
BLAST of mRNA_H-elongata_contig8424.16039.1 vs. uniprot
Match: A0A6H5K3R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3R8_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 5.490e-19 Identity = 65/180 (36.11%), Postives = 88/180 (48.89%), Query Frame = 1
Query: 472 SSVYWSQAASFTGNQAYRGGVLYIHNGGRLSYTGPTKFVLNSATKSGGVLGSGAFSAISNYEESLFFVRGPTSFENNTAGGNGGGIALLGMLNVEFEATEVTFYGNTADVAGGAIFISGTGVAPILSDMTFTSNSAKVGGAVYAVASGVELTEGNANP--TTFARCSFVGNKAVTTGGAV 1005
S V WS A F N A G +++ NG + +TG T F N A+ GGV+ S FV P + N LLG L+V F GNTA VAGGA+F+S T + P +++ SN A+VGGA+ + SG + P TTF +C F+ N+A+ TGG V
Sbjct: 18 SQVAWSAATEFEDNTALSGRAMFLWNGSHVEWTGDTDFSSNKASADGGVVWS--------------FVLTPFTTLNTP---------LLGGLSVAIGTENAVFVGNTAAVAGGAVFVSSTAIGPTFVNVSLISNWAQVGGAISLIGSGTSFNPEDYTPAPTTFDQCRFLSNRAIATGGTV 174
BLAST of mRNA_H-elongata_contig8424.16039.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 1.350e-16 Identity = 55/128 (42.97%), Postives = 71/128 (55.47%), Query Frame = 1
Query: 640 AISNYEESLFFVRGPTSFENNTAGGNGGGIALLGMLNVEFEATEVTFYGNTADVAGGAIFISGTGVAPILSDMTFTSNSAKVGGAVYAVASG-------VELTEGNANPTTFARCSFVGNKAVTTGGA 1002
++ N S + GPT+F NNT GG+GGG+A L+V+ + VTF GN A+VAGGA+F+SG GV + AV V SG +E +PTTF RCSFVGN+A TGGA
Sbjct: 516 SVYNLRSSTLLINGPTAFVNNTCGGSGGGLAAFDGLSVDIDTAGVTFSGNAAEVAGGAVFVSGAGVGFVFXXXXXXXXXXXXXXAVSIVGSGNLKGFFDLEWP----SPTTFDRCSFVGNQASATGGA 639
BLAST of mRNA_H-elongata_contig8424.16039.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 2.500e-15 Identity = 54/134 (40.30%), Postives = 71/134 (52.99%), Query Frame = 1
Query: 610 GGVLGSGAFSAISNYEESLFFVRGPTSFENNTAGGNGGGIALLGMLNVEFEATEVTFYGNTADVAGGAIFISGTGVAPILSDMTFTSNSAKVGGAVYAVASGVELTEGNANP--TTFARCSFVGNKAVTTGGAV 1005
GGV+GS ++ N + S V +ALLG L+V F GNTA VAGGAIF+SGT V P +++ SNSA+VGGA+ + SG + P TTF +C F N+A+ TGGAV
Sbjct: 257 GGVVGSFVLDSLYNPQGSYLIVXXXXXXXXXXXXXXXXALALLGGLSVTIGTENTVFVGNTAAVAGGAIFVSGTAVGPTFVNISLVSNSAQVGGAISLIGSGTSFNPEDYTPAPTTFEQCRFTSNRAIATGGAV 390
BLAST of mRNA_H-elongata_contig8424.16039.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 2.860e-15 Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 1
Query: 727 IALLGM-LNVEFEATEVTFYGNTADVAGGAIFISGTGVAPILSDMTFTSNSAKVGGAVYAVASG-VELTEGNA--NPTTFARCSFVGNKAVTTGGAV 1005
+ALLG L+VEF A V F NTA VAGGA+F+SG V P+LSD+ F +N A+VGGAV V SG ++ G A NPT F RC FV N+A TGGAV
Sbjct: 1383 LALLGGGLHVEFGAAGVVFSNNTAAVAGGAVFVSGADVGPVLSDVLFEANVAQVGGAVSTVGSGNLKEYAGLAPPNPTIFTRCRFVNNQAAATGGAV 1479 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8424.16039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8424.16039.1 >prot_H-elongata_contig8424.16039.1 ID=prot_H-elongata_contig8424.16039.1|Name=mRNA_H-elongata_contig8424.16039.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=335bp MSISYGFGIAGGAIAASGASLTFDDTAFIGNSALIGGALFVSEDSVGIFYback to top mRNA from alignment at H-elongata_contig8424:8511..9515- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8424.16039.1 ID=mRNA_H-elongata_contig8424.16039.1|Name=mRNA_H-elongata_contig8424.16039.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-elongata_contig8424:8511..9515- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8424:8511..9515- >mRNA_H-elongata_contig8424.16039.1 ID=mRNA_H-elongata_contig8424.16039.1|Name=mRNA_H-elongata_contig8424.16039.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2010bp|location=Sequence derived from alignment at H-elongata_contig8424:8511..9515- (Himanthalia elongata Himel1 dioecious)back to top |