mRNA_H-elongata_contig8394.16006.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8394.16006.1
Unique NamemRNA_H-elongata_contig8394.16006.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8394.16006.1 vs. uniprot
Match: D7G401_ECTSI (RME1, RME-1/EHD family ATPase with a C-terminal EH domain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G401_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.140e-6
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:   16 QVHAYIIGYLRGQMPSMMGKEKVQKKLIS 102
            +VHAYIIGYLR QMPSMMGKEKVQK+L +
Sbjct:  297 KVHAYIIGYLRAQMPSMMGKEKVQKQLTA 325
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BLAST of mRNA_H-elongata_contig8394.16006.1 vs. uniprot
Match: A0A453ST70_AEGTS (DUF5600 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453ST70_AEGTS)

HSP 1 Score: 45.4 bits (106), Expect = 8.450e-5
Identity = 19/28 (67.86%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   16 QVHAYIIGYLRGQMPSMMGKEKVQKKLI 99
            ++HAYIIG+L+ QMP+MMGK K Q+KLI
Sbjct:   63 KIHAYIIGHLKNQMPTMMGKAKAQQKLI 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8394.16006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G401_ECTSI1.140e-682.76RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
A0A453ST70_AEGTS8.450e-567.86DUF5600 domain-containing protein n=1 Tax=Aegilops... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8394contigH-elongata_contig8394:738..866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931244.250987-CDS-H-elongata_contig8394:737..8661622931244.250987-CDS-H-elongata_contig8394:737..866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8394 738..866 +
1691679757.137988-CDS-H-elongata_contig8394:737..8661691679757.137988-CDS-H-elongata_contig8394:737..866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8394 738..866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8394.16006.1prot_H-elongata_contig8394.16006.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8394 738..866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8394.16006.1

>prot_H-elongata_contig8394.16006.1 ID=prot_H-elongata_contig8394.16006.1|Name=mRNA_H-elongata_contig8394.16006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MTINVQVHAYIIGYLRGQMPSMMGKEKVQKKLISGETRRRKF*
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mRNA from alignment at H-elongata_contig8394:738..866+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8394.16006.1 ID=mRNA_H-elongata_contig8394.16006.1|Name=mRNA_H-elongata_contig8394.16006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig8394:738..866+ (Himanthalia elongata Himel1 dioecious)
ATGACGATAAACGTGCAGGTTCACGCCTACATTATCGGCTACCTTCGAGG
GCAGATGCCATCGATGATGGGAAAGGAGAAGGTGCAAAAGAAGCTCATCA
GCGGTGAGACTCGGCGTAGAAAATTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig8394:738..866+

>mRNA_H-elongata_contig8394.16006.1 ID=mRNA_H-elongata_contig8394.16006.1|Name=mRNA_H-elongata_contig8394.16006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig8394:738..866+ (Himanthalia elongata Himel1 dioecious)
ATGACGATAAACGTGCAGGTTCACGCCTACATTATCGGCTACCTTCGAGG
GCAGATGCCATCGATGATGGGAAAGGAGAAGGTGCAAAAGAAGCTCATCA
GCGGTGAGACTCGGCGTAGAAAATTCTAGATGACGATAAACGTGCAGGTT
CACGCCTACATTATCGGCTACCTTCGAGGGCAGATGCCATCGATGATGGG
AAAGGAGAAGGTGCAAAAGAAGCTCATCAGCGGTGAGACTCGGCGTAGAA
AATTCTAG
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