prot_H-elongata_contig8394.16006.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8394.16006.1
Unique Nameprot_H-elongata_contig8394.16006.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length43
Homology
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BLAST of mRNA_H-elongata_contig8394.16006.1 vs. uniprot
Match: D7G401_ECTSI (RME1, RME-1/EHD family ATPase with a C-terminal EH domain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G401_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.140e-6
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0 
Query:    6 QVHAYIIGYLRGQMPSMMGKEKVQKKLIS 34
            +VHAYIIGYLR QMPSMMGKEKVQK+L +
Sbjct:  297 KVHAYIIGYLRAQMPSMMGKEKVQKQLTA 325
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BLAST of mRNA_H-elongata_contig8394.16006.1 vs. uniprot
Match: A0A453ST70_AEGTS (DUF5600 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453ST70_AEGTS)

HSP 1 Score: 45.4 bits (106), Expect = 8.450e-5
Identity = 19/28 (67.86%), Postives = 25/28 (89.29%), Query Frame = 0 
Query:    6 QVHAYIIGYLRGQMPSMMGKEKVQKKLI 33
            ++HAYIIG+L+ QMP+MMGK K Q+KLI
Sbjct:   63 KIHAYIIGHLKNQMPTMMGKAKAQQKLI 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8394.16006.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G401_ECTSI1.140e-682.76RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
A0A453ST70_AEGTS8.450e-567.86DUF5600 domain-containing protein n=1 Tax=Aegilops... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040990Domain of unknown function DUF5600PFAMPF18150DUF5600coord: 5..35
e-value: 3.2E-7
score: 30.9
NoneNo IPR availableGENE3D1.10.268.20coord: 2..38
e-value: 7.3E-8
score: 34.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8394contigH-elongata_contig8394:738..866 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8394.16006.1mRNA_H-elongata_contig8394.16006.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8394 738..866 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8394.16006.1 ID=prot_H-elongata_contig8394.16006.1|Name=mRNA_H-elongata_contig8394.16006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MTINVQVHAYIIGYLRGQMPSMMGKEKVQKKLISGETRRRKF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040990DUF5600