mRNA_H-elongata_contig83759.15996.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: D8LIB7_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB7_ECTSI) HSP 1 Score: 154 bits (390), Expect = 6.840e-39 Identity = 123/347 (35.45%), Postives = 150/347 (43.23%), Query Frame = 1
Query: 19 RNSSFSESPWDGPGRLEADAEKD---KKLEHQXXXXRETAPMHDLPPYPYHDRQESAKSGLSHDLEGFSDFEPSVRTDSLAQQEGHGRGDSYQTSSVSRGVRGERVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAK-EKNDRARRQSL----------------------------------------------------EALVSKPNTR---GSSSAVRDRGEMKDEAAAGGVDGSNRGSSVFRQSLDEASLAHGDPYAPRV--------EYAVPTKNWVIFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 858
R+ S PW GPGR + +KD ++ + E MHDLPP P + S S LSHDL GFSDF+P+ ++ +++ S V GG AA + + AR+Q A P+ R + +AVRD G+MK+E GS G S FR S EA HGDP+ R EYAVPT +IFTP +F IC+ILLFWEF LN W AE L NPSYGPSVETLIEAGAKRTDLI+DNGDWWRLIS
Sbjct: 154 RDGGASAGPWSGPGRETSGWDKDGGGRQHRGRGKYAGEDGRMHDLPPMPDKKQMPSNHSVLSHDLSGFSDFDPTPKS-------------THRQRDASESVGSGGSGGAAGDIRAPHPAPSDRINWNRGLTGAAAAAADADARNLARKQXXXXXXXXXDLAQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKKPWPPSAHSGPPDPRKGQANGAAVRDMGDMKEE-------GSGSGMSAFRASTLEAQRTHGDPFDDRPRNENGTTGEYAVPTYRSLIFTPLMFLICLILLFWEFGLNGWEAESLEENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLIS 480
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A6H5JTL7_9PHAE (Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL7_9PHAE) HSP 1 Score: 149 bits (376), Expect = 4.780e-37 Identity = 117/338 (34.62%), Postives = 145/338 (42.90%), Query Frame = 1
Query: 19 RNSSFSESPWDGPGRLEADAEKD---KKLEHQXXXXRETAPMHDLPPYPYHDRQESAKSGLSHDLEGFSDFEPSVRTDSLAQQEGHGRGDSYQTSSVSRGVRGERVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAKEKNDRARRQSLE--------------------------------------------ALVSKPNTR---GSSSAVRDRGEMKDEAAAGGVDGSNRGSSVFRQSLDEASLAHGDPYAPRV--------EYAVPTKNWVIFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 858
R+ S PW GPGR + D ++ + E MHDLPP P + + S S LSHDL GFSDF+P+ ++ H + D +S S G G+ A++ A P+ R +A+RD G+MK+E GS G S FR S EA HGDP+ R EYAVP+ +IFTP +F IC+ILLFWEF LN WVAE L NPSYGPSVETLI+AGAKR DLI+DNGDWWRLIS
Sbjct: 155 RDGGASAGPWSGPGRQSSGWNMDGGGRQHSRRGKYAGEDGRMHDLPPMPDNKQMPSNHSVLSHDLSGFSDFDPTPKST-------HHKRDESVSSGGSGGAAGDITAPHPPPSDRINWNRGLTGAAAAAADADARNLARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAHNGPPDPRKGEADGAAMRDMGDMKEE-------GSGSGMSAFRASTLEAQRTHGDPFDDRPRNENGTTGEYAVPSYRSLIFTPLMFLICLILLFWEFGLNGWVAEPLEENPSYGPSVETLIDAGAKRGDLIVDNGDWWRLIS 478
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A7S3PMX5_9STRA (Rhomboid-like protein n=4 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMX5_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 5.660e-8 Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 637 VEYAVPTKNWVIFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 858
+++A P +FT +C I+ ++N W E + NP GP VETL++ GAK +DLI D GDWWRL++
Sbjct: 48 IKHARPKTYKPLFTLGFLCLCCIMFVVSIAMNGWAVEPVQINPLIGPGVETLLDLGAKESDLIQD-GDWWRLLA 120
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A7S2I4X1_9STRA (Rhomboid-like protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4X1_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.040e-7 Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 661 NWVIFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 858
N FT + +C LL +N W E ++NP GPS ETLI+ GAK+T+LI++ G+W+RL S
Sbjct: 160 NRPFFTIIVMVVCTALLVASIGVNGWKVESFSSNPMIGPSAETLIKMGAKQTNLIVNQGEWFRLFS 225
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A6T7HMA0_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7HMA0_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.200e-7 Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 1
Query: 613 HGDPYAPRVEYAVPTKNWV---IFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 858
+G+PY ++ + + FT I +C L +N WV E+L NP GPS +TLI+ GAK+++LI++ WRL+S
Sbjct: 360 NGEPYLAWSDFEASKSSGINRPFFTYFILIVCTAALITSIGMNGWVVEELKVNPMIGPSAQTLIDMGAKKSNLIVNENQAWRLVS 444
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A835Z6N5_9STRA (Rhomboid-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6N5_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.310e-7 Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 715 WEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 858
W FS +W E++ NP GPSVE LI++GAKR DLI+ +G+ WRL+S
Sbjct: 3 WTFSNGEWKVENIHVNPMLGPSVEALIDSGAKRGDLIIQDGEGWRLVS 50
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A7S2K7L5_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K7L5_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 3.610e-7 Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 1
Query: 613 HGDPYAPRVEYAVPTK---NWVIFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 858
H PY ++ V + N FT ++ +C I+L N WV + + NP GPS ETLI+ GAK ++LI++ G +RL++
Sbjct: 426 HNKPYLSWADFEVKKRSGRNQPFFTYSLLLVCSIMLIASIGANGWVVDSVTANPMIGPSAETLIDMGAKESNLIVNEGQGFRLLA 510
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A7S0A294_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A294_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 1.380e-5 Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1
Query: 724 SLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 858
+ N W E ++TNP GPS ETLI+ GAK TDLI++ WRL++
Sbjct: 4 AFNGWSVEPISTNPMIGPSAETLIQLGAKYTDLIVNENQVWRLVT 48
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A7S3PR50_9STRA (Rhomboid-like protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR50_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 7.790e-5 Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 1
Query: 577 VFRQSLDEASLAHGDPYAPRVEYAVPTKNWVIFTPAIFFICVILLFWEFSLNDWVA----EDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRL 852
+ ++L HG + E K W FT + C +++ E +N+ ED + NP +GPS+E L+ GAKRTDLI+ GDW+RL
Sbjct: 87 IDERTLRRQKTFHGAFFGKEKE----VKPW--FTRFMIGTCTLVMLVEVLINNKEQGKPFEDFSLNPLFGPSIEVLLLMGAKRTDLIVQEGDWYRL 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig83759.15996.1 >prot_H-elongata_contig83759.15996.1 ID=prot_H-elongata_contig83759.15996.1|Name=mRNA_H-elongata_contig83759.15996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp MSSRNTRNSSFSESPWDGPGRLEADAEKDKKLEHQRQRQRETAPMHDLPPback to top mRNA from alignment at H-elongata_contig83759:254..2009- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig83759.15996.1 ID=mRNA_H-elongata_contig83759.15996.1|Name=mRNA_H-elongata_contig83759.15996.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1756bp|location=Sequence derived from alignment at H-elongata_contig83759:254..2009- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig83759:254..2009- >mRNA_H-elongata_contig83759.15996.1 ID=mRNA_H-elongata_contig83759.15996.1|Name=mRNA_H-elongata_contig83759.15996.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig83759:254..2009- (Himanthalia elongata Himel1 dioecious)back to top |