prot_H-elongata_contig83759.15996.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig83759.15996.1
Unique Nameprot_H-elongata_contig83759.15996.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length286
Homology
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: D8LIB7_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB7_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 6.840e-39
Identity = 123/347 (35.45%), Postives = 150/347 (43.23%), Query Frame = 0
Query:    7 RNSSFSESPWDGPGRLEADAEKD---KKLEHQXXXXRETAPMHDLPPYPYHDRQESAKSGLSHDLEGFSDFEPSVRTDSLAQQEGHGRGDSYQTSSVSRGVRGERVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAK-EKNDRARRQSL----------------------------------------------------EALVSKPNTR---GSSSAVRDRGEMKDEAAAGGVDGSNRGSSVFRQSLDEASLAHGDPYAPRV--------EYAVPTKNWVIFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 286
            R+   S  PW GPGR  +  +KD   ++   +     E   MHDLPP P   +  S  S LSHDL GFSDF+P+ ++             +++    S  V     GG                            AA  +  + AR+Q                                                       A    P+ R    + +AVRD G+MK+E       GS  G S FR S  EA   HGDP+  R         EYAVPT   +IFTP +F IC+ILLFWEF LN W AE L  NPSYGPSVETLIEAGAKRTDLI+DNGDWWRLIS
Sbjct:  154 RDGGASAGPWSGPGRETSGWDKDGGGRQHRGRGKYAGEDGRMHDLPPMPDKKQMPSNHSVLSHDLSGFSDFDPTPKS-------------THRQRDASESVGSGGSGGAAGDIRAPHPAPSDRINWNRGLTGAAAAAADADARNLARKQXXXXXXXXXDLAQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKKPWPPSAHSGPPDPRKGQANGAAVRDMGDMKEE-------GSGSGMSAFRASTLEAQRTHGDPFDDRPRNENGTTGEYAVPTYRSLIFTPLMFLICLILLFWEFGLNGWEAESLEENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLIS 480          
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A6H5JTL7_9PHAE (Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL7_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 4.780e-37
Identity = 117/338 (34.62%), Postives = 145/338 (42.90%), Query Frame = 0
Query:    7 RNSSFSESPWDGPGRLEADAEKD---KKLEHQXXXXRETAPMHDLPPYPYHDRQESAKSGLSHDLEGFSDFEPSVRTDSLAQQEGHGRGDSYQTSSVSRGVRGERVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAKEKNDRARRQSLE--------------------------------------------ALVSKPNTR---GSSSAVRDRGEMKDEAAAGGVDGSNRGSSVFRQSLDEASLAHGDPYAPRV--------EYAVPTKNWVIFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 286
            R+   S  PW GPGR  +    D   ++   +     E   MHDLPP P + +  S  S LSHDL GFSDF+P+ ++        H + D   +S  S G  G+                                 A++                                                       A    P+ R      +A+RD G+MK+E       GS  G S FR S  EA   HGDP+  R         EYAVP+   +IFTP +F IC+ILLFWEF LN WVAE L  NPSYGPSVETLI+AGAKR DLI+DNGDWWRLIS
Sbjct:  155 RDGGASAGPWSGPGRQSSGWNMDGGGRQHSRRGKYAGEDGRMHDLPPMPDNKQMPSNHSVLSHDLSGFSDFDPTPKST-------HHKRDESVSSGGSGGAAGDITAPHPPPSDRINWNRGLTGAAAAAADADARNLARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAHNGPPDPRKGEADGAAMRDMGDMKEE-------GSGSGMSAFRASTLEAQRTHGDPFDDRPRNENGTTGEYAVPSYRSLIFTPLMFLICLILLFWEFGLNGWVAEPLEENPSYGPSVETLIDAGAKRGDLIVDNGDWWRLIS 478          
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A7S3PMX5_9STRA (Rhomboid-like protein n=4 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMX5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.660e-8
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 0
Query:  213 VEYAVPTKNWVIFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 286
            +++A P     +FT     +C I+     ++N W  E +  NP  GP VETL++ GAK +DLI D GDWWRL++
Sbjct:   48 IKHARPKTYKPLFTLGFLCLCCIMFVVSIAMNGWAVEPVQINPLIGPGVETLLDLGAKESDLIQD-GDWWRLLA 120          
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A7S2I4X1_9STRA (Rhomboid-like protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4X1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-7
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 0
Query:  221 NWVIFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 286
            N   FT  +  +C  LL     +N W  E  ++NP  GPS ETLI+ GAK+T+LI++ G+W+RL S
Sbjct:  160 NRPFFTIIVMVVCTALLVASIGVNGWKVESFSSNPMIGPSAETLIKMGAKQTNLIVNQGEWFRLFS 225          
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A6T7HMA0_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7HMA0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-7
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 0
Query:  205 HGDPYAPRVEYAVPTKNWV---IFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 286
            +G+PY    ++     + +    FT  I  +C   L     +N WV E+L  NP  GPS +TLI+ GAK+++LI++    WRL+S
Sbjct:  360 NGEPYLAWSDFEASKSSGINRPFFTYFILIVCTAALITSIGMNGWVVEELKVNPMIGPSAQTLIDMGAKKSNLIVNENQAWRLVS 444          
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A835Z6N5_9STRA (Rhomboid-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6N5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.310e-7
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 0
Query:  239 WEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 286
            W FS  +W  E++  NP  GPSVE LI++GAKR DLI+ +G+ WRL+S
Sbjct:    3 WTFSNGEWKVENIHVNPMLGPSVEALIDSGAKRGDLIIQDGEGWRLVS 50          
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A7S2K7L5_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K7L5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.610e-7
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 0
Query:  205 HGDPYAPRVEYAVPTK---NWVIFTPAIFFICVILLFWEFSLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 286
            H  PY    ++ V  +   N   FT ++  +C I+L      N WV + +  NP  GPS ETLI+ GAK ++LI++ G  +RL++
Sbjct:  426 HNKPYLSWADFEVKKRSGRNQPFFTYSLLLVCSIMLIASIGANGWVVDSVTANPMIGPSAETLIDMGAKESNLIVNEGQGFRLLA 510          
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A7S0A294_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A294_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.380e-5
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0
Query:  242 SLNDWVAEDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS 286
            + N W  E ++TNP  GPS ETLI+ GAK TDLI++    WRL++
Sbjct:    4 AFNGWSVEPISTNPMIGPSAETLIQLGAKYTDLIVNENQVWRLVT 48          
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Match: A0A7S3PR50_9STRA (Rhomboid-like protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR50_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.790e-5
Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 0
Query:  193 VFRQSLDEASLAHGDPYAPRVEYAVPTKNWVIFTPAIFFICVILLFWEFSLNDWVA----EDLATNPSYGPSVETLIEAGAKRTDLILDNGDWWRL 284
            +  ++L      HG  +    E     K W  FT  +   C +++  E  +N+       ED + NP +GPS+E L+  GAKRTDLI+  GDW+RL
Sbjct:   87 IDERTLRRQKTFHGAFFGKEKE----VKPW--FTRFMIGTCTLVMLVEVLINNKEQGKPFEDFSLNPLFGPSIEVLLLMGAKRTDLIVQEGDWYRL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83759.15996.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LIB7_ECTSI6.840e-3935.45Rhomboid-like protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JTL7_9PHAE4.780e-3734.62Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A7S3PMX5_9STRA5.660e-840.54Rhomboid-like protein n=4 Tax=Aplanochytrium stocc... [more]
A0A7S2I4X1_9STRA1.040e-743.94Rhomboid-like protein n=2 Tax=Helicotheca tamesis ... [more]
A0A6T7HMA0_9STRA1.200e-735.29Rhomboid-like protein (Fragment) n=1 Tax=Attheya s... [more]
A0A835Z6N5_9STRA1.310e-754.17Rhomboid-like protein n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2K7L5_9STRA3.610e-735.29Rhomboid-like protein (Fragment) n=1 Tax=Leptocyli... [more]
A0A7S0A294_9STRA1.380e-551.11Rhomboid-like protein (Fragment) n=1 Tax=Rhizosole... [more]
A0A7S3PR50_9STRA7.790e-534.38Rhomboid-like protein n=1 Tax=Aplanochytrium stocc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..221
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 240..286
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 222..239
NoneNo IPR availableTMHMMTMhelixcoord: 221..243

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83759contigH-elongata_contig83759:254..2009 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83759.15996.1mRNA_H-elongata_contig83759.15996.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig83759 254..2009 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig83759.15996.1 ID=prot_H-elongata_contig83759.15996.1|Name=mRNA_H-elongata_contig83759.15996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp
MSSRNTRNSSFSESPWDGPGRLEADAEKDKKLEHQRQRQRETAPMHDLPP
YPYHDRQESAKSGLSHDLEGFSDFEPSVRTDSLAQQEGHGRGDSYQTSSV
SRGVRGERVGGGGGGGPRPMMTGAEAAAAAEATNVAAAKAAKEKNDRARR
QSLEALVSKPNTRGSSSAVRDRGEMKDEAAAGGVDGSNRGSSVFRQSLDE
ASLAHGDPYAPRVEYAVPTKNWVIFTPAIFFICVILLFWEFSLNDWVAED
LATNPSYGPSVETLIEAGAKRTDLILDNGDWWRLIS
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