mRNA_H-elongata_contig83261.15965.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83261.15965.1
Unique NamemRNA_H-elongata_contig83261.15965.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83261.15965.1 vs. uniprot
Match: D8LGG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG3_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 7.630e-10
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    4 EKSYLFEDRLETAKRLRQLGNEQFSRGRMKDAAETYQRS 120
            EKSYLFE+RLETA RLRQLGNE+F RG M+DAAE Y+R+
Sbjct:   21 EKSYLFEERLETAGRLRQLGNERFKRGCMEDAAEAYERA 59
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BLAST of mRNA_H-elongata_contig83261.15965.1 vs. uniprot
Match: A0A6H5K9H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H3_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.510e-9
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    4 EKSYLFEDRLETAKRLRQLGNEQFSRGRMKDAAETYQRS 120
            EKSYLFE+RLETA RLRQLGNE+F RGRM+ AAE Y+R+
Sbjct:   21 EKSYLFEERLETAGRLRQLGNERFKRGRMEGAAEAYERA 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83261.15965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGG3_ECTSI7.630e-1076.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9H3_9PHAE3.510e-976.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83261contigH-elongata_contig83261:2597..2734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003930.1
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.168705-CDS-H-elongata_contig83261:2596..27341622931240.168705-CDS-H-elongata_contig83261:2596..2734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83261 2597..2734 +
1691679755.730802-CDS-H-elongata_contig83261:2596..27341691679755.730802-CDS-H-elongata_contig83261:2596..2734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83261 2597..2734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83261.15965.1prot_H-elongata_contig83261.15965.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83261 2597..2734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83261.15965.1

>prot_H-elongata_contig83261.15965.1 ID=prot_H-elongata_contig83261.15965.1|Name=mRNA_H-elongata_contig83261.15965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
QEKSYLFEDRLETAKRLRQLGNEQFSRGRMKDAAETYQRSAFPPR*
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mRNA from alignment at H-elongata_contig83261:2597..2734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83261.15965.1 ID=mRNA_H-elongata_contig83261.15965.1|Name=mRNA_H-elongata_contig83261.15965.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig83261:2597..2734+ (Himanthalia elongata Himel1 dioecious)
CAGGAGAAGTCGTACTTATTCGAAGATAGACTGGAGACGGCGAAACGGCT
GCGTCAACTCGGAAACGAGCAATTCTCCAGGGGACGCATGAAGGACGCCG
CCGAGACTTATCAACGGTCAGCCTTTCCCCCTCGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig83261:2597..2734+

>mRNA_H-elongata_contig83261.15965.1 ID=mRNA_H-elongata_contig83261.15965.1|Name=mRNA_H-elongata_contig83261.15965.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig83261:2597..2734+ (Himanthalia elongata Himel1 dioecious)
CAGGAGAAGTCGTACTTATTCGAAGATAGACTGGAGACGGCGAAACGGCT
GCGTCAACTCGGAAACGAGCAATTCTCCAGGGGACGCATGAAGGACGCCG
CCGAGACTTATCAACGGTCAGCCTTTCCCCCTCGCTAACAGGAGAAGTCG
TACTTATTCGAAGATAGACTGGAGACGGCGAAACGGCTGCGTCAACTCGG
AAACGAGCAATTCTCCAGGGGACGCATGAAGGACGCCGCCGAGACTTATC
AACGGTCAGCCTTTCCCCCTCGCTAA
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