mRNA_H-elongata_contig8315.15950.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8315.15950.1
Unique NamemRNA_H-elongata_contig8315.15950.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8315.15950.1 vs. uniprot
Match: A0A6V1P3W9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P3W9_HETAK)

HSP 1 Score: 224 bits (571), Expect = 1.090e-67
Identity = 123/296 (41.55%), Postives = 175/296 (59.12%), Query Frame = 1
Query:    7 VIISVLLQFLNKIDRQDLKPAVWKGAFTGLAGAIAIGICFIIAYYETSEQFFTGRTEYIVEAILMITASVIVTILSASMLKIAHMREKWERKLQEGMIKAEQQGSDLKYSYMFWLPLIAVLREGIETVIFLAGTSSSYPAEAIPIPGILGVVVGLAIGWFIFRAGREASLKNLLTVSTVILLFIAAGLFSYGVHELQELELFGTWDGERNHMVRAGTEGDPSYRSRQVI-WPQAASVLVACGNTASWNICDVADNDHEFWGLMRALFGYTCKPTPVEMIAYVLYWVMAITYLCYKL 891
            +I+SVLLQ+L K  R +LK  VW G   GLA A+ +G+ F+  +Y   +  FTG  E + E +LM+ A VI+T+L  SM+K+A   +K+ RK+ E  IK   +G +     + WLPL ++LREGIE++IFL G  +SY A AIPIPGILG+VVG  + W +++AG   +L+N     TV LLFIAAGL SYG+HE+QE   FG W+ +           D  + +R +  W  A S                    HEFW ++RALFG+   P+PVE I+Y  YWV+ + ++ +KL
Sbjct:   59 IIVSVLLQYLEKTQRPELKRDVWIGTGIGLAVAVVLGVIFVAVFYIAKDNIFTGSAEALFEGVLMLAACVIITVLGVSMIKMAKKMDKYRRKM-ELKIKDVMEGRERHG--LIWLPLTSILREGIESIIFLFGVGASYEASAIPIPGILGMVVGALVSWGLYKAGDRLNLQNFFYACTVFLLFIAAGLCSYGIHEIQEAGAFGCWECD-----------DRPWGNRPMYDWGDAFSY-----------------KKHEFWAIVRALFGFRGDPSPVEFISYWCYWVVCLAFVAFKL 323          
BLAST of mRNA_H-elongata_contig8315.15950.1 vs. uniprot
Match: A0A835YPH3_9STRA (Iron permease FTR1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH3_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.760e-60
Identity = 101/219 (46.12%), Postives = 139/219 (63.47%), Query Frame = 1
Query:  241 MLKIAHMREKWERKLQEGMIKAEQQGS--DLKYSYMFWLPLIAVLREGIETVIFLAGTSSSYPAEAIPIPGILGVVVGLAIGWFIFRAGREASLKNLLTVSTVILLFIAAGLFSYGVHELQELELFGTWDGERNHMVRAGTEGDPSYRSRQVIWPQAASVLVACGNTASWNICDVADNDHEFWGLMRALFGYTCKPTPVEMIAYVLYWVMAITYLCYKL 891
            ML +   RE WE KLQ  + KA+++G+   ++ S MFW+P IAVLREGIETVIFLAG  + YP ++IPIPGI+G++ GLA GW +F AG + +++  L  STV+LLFI+AGL  YG HE QE  +FGT++ +   +   G   +P                        W+ICD   ND + W + RALFGYTC P+P E++ Y +YWV+A+TYLC+KL
Sbjct:    1 MLNLNKNREAWEAKLQAQLEKADREGAVTSIRKSQMFWIPFIAVLREGIETVIFLAGVGAGYPLKSIPIPGIIGLITGLAAGWLLFTAGGKCTMRAFLICSTVLLLFISAGLAMYGAHEFQEAGMFGTYENDEGEVQ--GVMNEPV-----------------------WDICDCCANDAKGWDIFRALFGYTCAPSPWEILVYCVYWVIALTYLCFKL 194          
BLAST of mRNA_H-elongata_contig8315.15950.1 vs. uniprot
Match: A0A1Y1HJN3_KLENI (Similar to high-affinity iron permease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HJN3_KLENI)

HSP 1 Score: 197 bits (501), Expect = 2.130e-57
Identity = 114/302 (37.75%), Postives = 173/302 (57.28%), Query Frame = 1
Query:    1 AVVIISVLLQFLNKIDRQDLKPAVWKGAFTGLAGAIAIGICFIIAYYETSEQFFTGRTEYIVEAILMITASVIVTILSASMLKIAHMREKWERKLQEGMIKAEQQGSDLKYSY-MFWLPLIAVLREGIETVIFLAGTSSSYPAEAIPIPGILGVVVGLAIGWFIFRAGREASLKNLLTVSTVILLFIAAGLFSYGVHELQELELFGTWDGERNHMVRAGTEGDPSYRSRQVIWPQAASVLVACGNTASWNICDVADNDHE-FWGLMRALFGYTCKPTPVEMIAYVLYWVMAITYLCYKLHKG 900
            A VI++VLLQ++ K  +  LK  VW GA  GL  +I   +     YY    + F G+ E I E ++ + ASV++TIL+  MLK+  +++KW RKL++  ++A +  +    +Y +F +   AVLREGIE+V+FLAG     P +AIP+ GI+G ++G+++G+ +F   +   LK    +STVILLF+AAGL   G+HE QE   FG + GE             +  + + +  +  SV     N   WNICD   ND + F+ L +AL GYTC PT + +I Y++YW+  I  + YK   G
Sbjct:   22 AAVILAVLLQYVAKTGKTHLKKQVWFGAGLGLLLSIIFAVXXXXIYYTLDNEVFEGKGEQIFEGVISVIASVMITILAFGMLKMMALQDKWNRKLKKSALEALEGKTAFTITYALFLIAFTAVLREGIESVLFLAGVGVDTPWKAIPLGGIVGALLGVSLGYVLFFGLKPVQLKWFFVISTVILLFLAAGLMMTGMHEFQEAGAFGYY-GEEXXXXXXXXXXALAPSALEEMEEEEKSV--PWHNKPLWNICDCCSNDDQGFFELAKALVGYTCDPTFIHVITYIIYWIFVIGIVVYKASTG 320          
BLAST of mRNA_H-elongata_contig8315.15950.1 vs. uniprot
Match: A0A1Y1IRQ1_KLENI (Similar to high-affinity iron permease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IRQ1_KLENI)

HSP 1 Score: 197 bits (500), Expect = 3.620e-57
Identity = 113/304 (37.17%), Postives = 174/304 (57.24%), Query Frame = 1
Query:    1 AVVIISVLLQFLNKIDRQDLKPAVWKGAFTGLAGAIAIGICFIIAYYETSEQFFTGRTEYIVEAILMITASVIVTILSASMLKIAHMREKWERKLQEGMIKAEQQGSD---LKYSYMFWLPLIAVLREGIETVIFLAGTSSSYPAEAIPIPGILGVVVGLAIGWFIFRAGREASLKNLLTVSTVILLFIAAGLFSYGVHELQELELFGTWDGERNHMVRAGTEGDPSYRSRQVIWPQAASVLVACGNTASWNICDVADN-DHEFWGLMRALFGYTCKPTPVEMIAYVLYWVMAITYLCYKLHKG 900
            A VI++VLLQ++ K  +  L+  VW GA  G   ++   + FII YY    + FTG+ E I E I+ I ASV++T+L+  MLK+  +++KW+RKL+   ++  + G     + Y+ +F +   AVLREGIE+V+FLAG   + P  AIP+ G +G V+G+ +G+ +F   +   L+    +STVILLFIAAGLF  G  E QE   FG +  E +     G+E +        +  +     V   N   WNIC   D+ D  F+ L RAL GY C PT ++++AY+ YW++ +  +  K+ +G
Sbjct:   22 AAVILAVLLQYVTKTGKLHLRKQVWLGAGLGFLLSLVFAVVFIIIYYTLDHEVFTGKGEAIFEGIVCIIASVMITVLAFGMLKMMELQKKWDRKLKAATLEVVETGKRKFVVTYA-LFIIAFTAVLREGIESVLFLAGVGVNTPWRAIPLGGAVGAVLGVCLGYVLFFGLKPVQLRWFFYISTVILLFIAAGLFMSGFGEFQEAGAFG-YSAEEDEDXXGGSEDNAIAPGPSPV--EEEDRFVPWQNRPLWNICKCCDDEDQGFFELARALVGYVCDPTIIQVVAYIAYWLLVLVIVAVKVKRG 321          
BLAST of mRNA_H-elongata_contig8315.15950.1 vs. uniprot
Match: A0A835YQM0_9STRA (Iron permease FTR1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM0_9STRA)

HSP 1 Score: 193 bits (490), Expect = 4.050e-57
Identity = 97/220 (44.09%), Postives = 135/220 (61.36%), Query Frame = 1
Query:  241 MLKIAHMREKWERKLQEGMIKAEQQGS---DLKYSYMFWLPLIAVLREGIETVIFLAGTSSSYPAEAIPIPGILGVVVGLAIGWFIFRAGREASLKNLLTVSTVILLFIAAGLFSYGVHELQELELFGTWDGERNHMVRAGTEGDPSYRSRQVIWPQAASVLVACGNTASWNICDVADNDHEFWGLMRALFGYTCKPTPVEMIAYVLYWVMAITYLCYKL 891
            MLK++  +E WE KL+  + KA+ +G+    L+ S MFW+P I+VLREGIETVIFLAG  + YP ++IPIPGI+G++ GL  GW +F AG + S+K  L  STV+LLFI+ GL  YG HE QE  +FG ++ +         EG+                +    N   WNICD  +   + W +   LFGYTC P+P E++ Y LYWV+A+TYLC+K+
Sbjct:    1 MLKMSKFQEAWEAKLRAQLEKADAEGTTGTSLRKSQMFWIPFISVLREGIETVIFLAGVGAGYPLKSIPIPGIVGLITGLIAGWLLFAAGGKCSMKGFLVCSTVLLLFISGGLALYGAHEFQEAGMFGAYEND---------EGE----------------IQGAMNEPVWNICDCCNQADKGWDVFNRLFGYTCAPSPWEILVYCLYWVLALTYLCFKI 195          
BLAST of mRNA_H-elongata_contig8315.15950.1 vs. uniprot
Match: A0A1Y1IM50_KLENI (Similar to high-affinity iron permease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IM50_KLENI)

HSP 1 Score: 185 bits (470), Expect = 1.060e-52
Identity = 112/308 (36.36%), Postives = 167/308 (54.22%), Query Frame = 1
Query:    1 AVVIISVLLQFLNKIDRQDLKPAVWKGAFTGLAGAIAIGICFIIAYYETSEQFFTGRTEYIVEAILMITASVIVTILSASMLKIAHMREKWERKLQEGMIKAEQ--QGSDLKYSYMFWLPLIAVLREGIETVIFLAGTSSSYPAEAIPIPGILGVVVGLAIGWFIFRAGREASLKNLLTVSTVILLFIAAGLFSYGVHELQELELFGTW-----DGERNHMVRAGTEGDPSYRSRQVIWPQAASVLVACGNTASWNICDV-ADNDHEFWGLMRALFGYTCKPTPVEMIAYVLYWVMAITYLCYKLHKG 900
            A VI++VLLQ++ K  +  LK  VW GA  GL  +I         YY   ++ FTG+ E I   I+ + ASV++TIL+  MLK+  ++EKW RKL++  ++A +  Q    +Y+ +F +   AV+REGIE V+FLAG     P +AIP+ G +G  +G+  G+F+F   +   +K    +STVIL+F+AAGL   G+HE Q    FG +     +GE                 R++ W           N A WNIC   +D D  F+ L RAL GY C PT +++I Y+ YW++ I    +K  +G
Sbjct:   22 AAVIMAVLLQYVAKTGKTYLKKQVWIGAGLGLLLSIXXXXXXXXXYYTLDKEVFTGKGEQIFSRIISVIASVMITILAFGMLKMFALQEKWNRKLKKSALEALEGKQAFTTRYA-LFIIAFTAVIREGIEAVLFLAGVGVGTPWKAIPLGGFVGAALGVFFGYFLFFGLKPVQMKWFFYISTVILMFLAAGLMMTGIHEFQLAGAFGYFPPESDEGESAPXXXXXXXXXXXXXXRELSWH----------NKALWNICSCCSDADQGFFELARALVGYVCDPTFIQVITYICYWIVVIGVFVFKARRG 318          
BLAST of mRNA_H-elongata_contig8315.15950.1 vs. uniprot
Match: E1ZPR3_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZPR3_CHLVA)

HSP 1 Score: 176 bits (445), Expect = 2.240e-48
Identity = 114/302 (37.75%), Postives = 170/302 (56.29%), Query Frame = 1
Query:    1 AVVIISVLLQFLNKIDRQDLKPAVWKGAFTGLAGAIAIGICFIIAYYETSEQFFTGRTEYIVEAILMITASVIVTILSASMLKIAHMREKWERKLQEGMIKAEQQGSDLKYSY-MFWLPLIAVLREGIETVIFLAGTSSSYPAEAIPIPGILGVVVGLAIGWFIFRAGREA-SLKNLLTVSTVILLFIAAGLFSYGVHELQELELFGTWDGERNHMVRAGTEGDPSYRSRQVIWPQAASVLVACGNTASWNICDVADNDHEFWGLMRALFGYTCKPTPVEMIAYVLYWVMAITYLCYKLHKG 900
            A V++SVLLQ + K+ +  LK  VW GA  G+A +I IGI FI+ +Y   E+ FTG ++ I + ++   AS+++T+++  MLK  ++  KW RKL EG +  ++Q +   Y + +  L L A LREGIE+V+FL G S     ++I IPGI+GV++GL +G  IF  GR   SLK    +S  +LL IAAGL + GV  L    LFG              E  P +   +++W  +               C++  ND  FW L+RALFGYT +PT + ++ Y+LYW++ I  + YK   G
Sbjct:   19 AAVVVSVLLQLVEKM-KLPLKKHVWIGALLGVAISIVIGIIFIVLFYVAGEKIFTGNSQSIFKGVVSWIASLLITVVAFHMLKFYNVERKWRRKL-EGAMDGDRQAAARSYRWSILLLALSATLREGIESVLFLTGVSQGDGVKSIIIPGIVGVILGLGVGMLIFYTGRTIKSLKWFFILSCGLLLLIAAGLVASGVVFLTSAGLFGN---------TFPYEDAPWFN--KILWDTSGC-------------CNMYTND--FWSLVRALFGYTDQPTALNLLYYLLYWMVVIFVMAYKWWHG 292          
BLAST of mRNA_H-elongata_contig8315.15950.1 vs. uniprot
Match: A0A2P6VGS2_9CHLO (Plasma membrane iron permease n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VGS2_9CHLO)

HSP 1 Score: 181 bits (460), Expect = 6.140e-48
Identity = 113/306 (36.93%), Postives = 171/306 (55.88%), Query Frame = 1
Query:    1 AVVIISVLLQFLNKIDRQDLKPAVWKGAFTGLAGAIAIGICFIIAYYETSEQFFTGRTEYIVEAILMITASVIVTILSASMLKIAHMREKWERKLQEGMIKAEQQGSDLKYSY-MFWLPLIAVLREGIETVIFLAGTSSSYPAEAIPIPGILGVVVGLAIGWFIFRAGREA-SLKNLLTVSTVILLFIAAGLFSYGVHELQELELFGTWDGERNHMVRAGTEGDPSYRSRQ----VIWPQAASVLVACGNTASWNICDVADNDHEFWGLMRALFGYTCKPTPVEMIAYVLYWVMAITYLCYKLHKG 900
            A V++SVLLQ + K+    LK  VW GA  G+A +I IGI FI+ +Y  +E+ FTG ++ I + ++   A +++T+++  MLK  ++  KW RKL EG + A+++ +   Y + +  L   A LREGIE+V+FL G S     +AI IPGI+GV++GL +G  IF  GR   SLK    +S+ +LLFIAAGL + GV       LFGT                  Y  R+    ++W  +               C++  N  EFW L+RALFGYT +PT + ++ Y+LYW++ +  + +K H G
Sbjct:   19 AAVVVSVLLQLVEKMRMPQLKKHVWFGALAGVAVSIVIGIVFIVLFYVANEKLFTGDSQAIFKGVISWVACLLITVVAFHMLKFYNVERKWRRKL-EGALDADREIAARSYRWSIMLLAFSATLREGIESVLFLTGVSQGDGIKAIIIPGIVGVILGLGVGMLIFYTGRTIKSLKWFFILSSGLLLFIAAGLVAQGVVFFTSAGLFGTTF---------------PYEEREWYNHILWDTSGC-------------CNMYTN--EFWSLVRALFGYTDQPTGLNLMYYLLYWIVVLASMAWKAHTG 293          
BLAST of mRNA_H-elongata_contig8315.15950.1 vs. uniprot
Match: Q0CE53_ASPTN (Plasma membrane iron permease n=2 Tax=Aspergillus terreus TaxID=33178 RepID=Q0CE53_ASPTN)

HSP 1 Score: 160 bits (404), Expect = 9.060e-43
Identity = 109/310 (35.16%), Postives = 160/310 (51.61%), Query Frame = 1
Query:    7 VIISVLLQFLNKI--------DRQDLKPAVWKGAFTGLAGAIAIGICFIIAYYETSEQFFTGRTEYIVEAILMITASVIVTILSASMLKIAHMREKWERKL----QEGMIKAEQQGSDLKY----SYMFWLPLIAVLREGIETVIFLAGTSSSYPAEAIPIPGILGVVVGLAIGWFIFRAGREASLKNLLTVSTVILLFIAAGLFSYGVHELQELELFGTWDGERNHMV---RAGTEGDP-SYRSRQVIWPQAASVLVACGNTASWNICDVADNDHEFWGLMRALFGYTCKPTPVEMIAYVLYWVMAITY 876
            +I+SVLL FL++          R+ L   VW G   GL   + IG   I A+Y   +  F   TE + E I  + AS+I+TI+ A++L++  +REKW  KL    +E  +   +     K+     +MF LP I VLREG+E V+F+ G S S+PA A P+P I G++ G+A+G+ I+R G + SL+  L +ST +L  +AAGL S GV  L+      TW    NH++    A T   P SY  RQ +W                N C    N    WG+  A+ G+T   T   +I+Y LYW++ I +
Sbjct:   23 IIVSVLLSFLHQTLGADSDAATRKKLVKQVWWGVAIGLVICLIIGGGMIGAFYGYGKDHF-ANTEDLWEGIFSLIASIIITIMGAALLRVNKLREKWRLKLAQALEEKTVPTGKWSDRFKHWAQKYFMFVLPFITVLREGLEAVVFIGGVSLSFPASAFPLPVITGILAGIAVGYVIYRGGNQTSLQIFLVISTCLLYLVAAGLCSRGVWYLEN----NTW----NHLIGGDAAETGAGPGSYDIRQSVWHV--------------NCCSPLVNGGGGWGIFNAILGWTNSATYGSVISYNLYWLVVIVW 309          
BLAST of mRNA_H-elongata_contig8315.15950.1 vs. uniprot
Match: A0A1E3BNE3_9EURO (Uncharacterized protein n=1 Tax=Aspergillus cristatus TaxID=573508 RepID=A0A1E3BNE3_9EURO)

HSP 1 Score: 154 bits (389), Expect = 1.210e-40
Identity = 101/317 (31.86%), Postives = 157/317 (49.53%), Query Frame = 1
Query:    7 VIISVLLQFLNKI--------DRQDLKPAVWKGAFTGLAGAIAIGICFIIAYYETSEQFFTGRTEYIVEAILMITASVIVTILSASMLKIAHMREKWERKLQEGMIKAEQQGSDLK--------YSYMFWLPLIAVLREGIETVIFLAGTSSSYPAEAIPIPGILGVVVGLAIGWFIFRAGREASLKNLLTVSTVILLFIAAGLFSYGVHELQELELFGTWDGERNHMVRAGTE----GDPSYRSRQVIWPQAASVLVACGNTASWNICDVADNDHEFWGLMRALFGYTCKPTPVEMIAYVLYWVMAITYLCYKLHK 897
            +I++VL  FL++          R+ L   VW G   GL   + IG   I A+Y   + +F    E++ E I  + ASVI+T++ A++L++  ++EKW  KL+  + +    G+  K          +MF +P I VLREGIE V+F+ G S S+PA A P+P I G++ G  +G+ I+R G + SL+  L +ST +L  +AAGL + GV  L+      TW    NH+V   T     G  SY  RQ +W                N C         WG+  A+ G+T   T   +++Y  YW++ I +     +K
Sbjct:   23 IIVAVLFSFLHQALGSDREAGIRKRLIRQVWFGIALGLFICLCIGGGMIGAFYSYGKDYFASA-EFLWEGIFALVASVIITVMGAALLRVNKLQEKWRVKLERALTEKHWSGATFKDRCKRWLQQYFMFVVPFITVLREGIEAVVFIGGVSLSFPASAFPLPVITGLLAGALVGYIIYRGGNQTSLQIFLVISTCLLYLVAAGLCTRGVWYLEN----NTW----NHLVGGETAEMGAGPGSYDIRQSVWHV--------------NCCSPLKGGGGGWGIFNAILGWTNSATYGSVLSYNFYWLVVILWFVLMRYK 316          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8315.15950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P3W9_HETAK1.090e-6741.55Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835YPH3_9STRA1.760e-6046.12Iron permease FTR1 family-domain-containing protei... [more]
A0A1Y1HJN3_KLENI2.130e-5737.75Similar to high-affinity iron permease n=1 Tax=Kle... [more]
A0A1Y1IRQ1_KLENI3.620e-5737.17Similar to high-affinity iron permease n=1 Tax=Kle... [more]
A0A835YQM0_9STRA4.050e-5744.09Iron permease FTR1 family-domain-containing protei... [more]
A0A1Y1IM50_KLENI1.060e-5236.36Similar to high-affinity iron permease n=1 Tax=Kle... [more]
E1ZPR3_CHLVA2.240e-4837.75Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A2P6VGS2_9CHLO6.140e-4836.93Plasma membrane iron permease n=1 Tax=Micractinium... [more]
Q0CE53_ASPTN9.060e-4335.16Plasma membrane iron permease n=2 Tax=Aspergillus ... [more]
A0A1E3BNE3_9EURO1.210e-4031.86Uncharacterized protein n=1 Tax=Aspergillus crista... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8315contigH-elongata_contig8315:1557..3263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score175.3
Seed ortholog evalue4.4e-41
Seed eggNOG ortholog554065.XP_005844294.1
Preferred nameFTR1
KEGG koko:K07243
KEGG TC2.A.108.1,2.A.108.2
EggNOG free text desc.Iron permease FTR1 family
EggNOG OGs2QQWE@2759,34KZI@3041,37X5P@33090,COG0672@1
COG Functional cat.P
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons5
Model size903
Cds size903
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8315.15950.1prot_H-elongata_contig8315.15950.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8315 1557..3263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931238.499702-CDS-H-elongata_contig8315:1556..17541622931238.499702-CDS-H-elongata_contig8315:1556..1754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8315 1557..1754 +
1691679754.9160757-CDS-H-elongata_contig8315:1556..17541691679754.9160757-CDS-H-elongata_contig8315:1556..1754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8315 1557..1754 +
1622931238.5126436-CDS-H-elongata_contig8315:1954..21791622931238.5126436-CDS-H-elongata_contig8315:1954..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8315 1955..2179 +
1691679754.9293573-CDS-H-elongata_contig8315:1954..21791691679754.9293573-CDS-H-elongata_contig8315:1954..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8315 1955..2179 +
1622931238.5307982-CDS-H-elongata_contig8315:2483..26221622931238.5307982-CDS-H-elongata_contig8315:2483..2622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8315 2484..2622 +
1691679754.938611-CDS-H-elongata_contig8315:2483..26221691679754.938611-CDS-H-elongata_contig8315:2483..2622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8315 2484..2622 +
1622931238.5454314-CDS-H-elongata_contig8315:2795..29621622931238.5454314-CDS-H-elongata_contig8315:2795..2962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8315 2796..2962 +
1691679754.9527812-CDS-H-elongata_contig8315:2795..29621691679754.9527812-CDS-H-elongata_contig8315:2795..2962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8315 2796..2962 +
1622931238.5578244-CDS-H-elongata_contig8315:3089..32631622931238.5578244-CDS-H-elongata_contig8315:3089..3263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8315 3090..3263 +
1691679754.963357-CDS-H-elongata_contig8315:3089..32631691679754.963357-CDS-H-elongata_contig8315:3089..3263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8315 3090..3263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8315.15950.1

>prot_H-elongata_contig8315.15950.1 ID=prot_H-elongata_contig8315.15950.1|Name=mRNA_H-elongata_contig8315.15950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp
AVVIISVLLQFLNKIDRQDLKPAVWKGAFTGLAGAIAIGICFIIAYYETS
EQFFTGRTEYIVEAILMITASVIVTILSASMLKIAHMREKWERKLQEGMI
KAEQQGSDLKYSYMFWLPLIAVLREGIETVIFLAGTSSSYPAEAIPIPGI
LGVVVGLAIGWFIFRAGREASLKNLLTVSTVILLFIAAGLFSYGVHELQE
LELFGTWDGERNHMVRAGTEGDPSYRSRQVIWPQAASVLVACGNTASWNI
CDVADNDHEFWGLMRALFGYTCKPTPVEMIAYVLYWVMAITYLCYKLHKG
*
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mRNA from alignment at H-elongata_contig8315:1557..3263+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8315.15950.1 ID=mRNA_H-elongata_contig8315.15950.1|Name=mRNA_H-elongata_contig8315.15950.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1707bp|location=Sequence derived from alignment at H-elongata_contig8315:1557..3263+ (Himanthalia elongata Himel1 dioecious)
GCGGTGGTGATCATTTCAGTATTGCTGCAGTTCCTTAACAAGATCGATAG GCAGGACCTGAAGCCTGCAGTGTGGAAGGGGGCGTTCACAGGACTTGCGG GCGCCATCGCCATCGGTATCTGCTTCATTATTGCGTACTACGAGACAAGC GAACAATTCTTTACGGGAAGGACGGAGTACATCGTCGAAGCAATTCTGGT GGGTCATTCTCCCATCCTAGCGACACCCCCGCCGTCCATAGTATCATTGG TTTTGCCTATTATGCAATATTTGAATGCGAGATCCGACCCCTATCCTATG AAACAGAAGCACATATTTACTGGTCTCAACACTATTTTCCATCCTCGCCT CCCTGGATCGAAATCTATTTAACACATGCCGTTCGATTCCTTTTCCAGAT GATCACGGCATCAGTCATCGTGACGATTCTGTCGGCTTCTATGCTCAAGA TCGCCCACATGCGCGAGAAGTGGGAGAGGAAGCTCCAGGAGGGGATGATC AAGGCCGAGCAGCAGGGCTCTGACCTGAAGTACTCCTATATGTTCTGGCT GCCGCTCATCGCAGTACTTCGCGAGGGCATTGAGACCGTCATATTTTTGG CAGGCACCAGCAGCAGCTACCCGGTGAGAATCATCCTTCTTTTGTGAATA AAATCACGACGTTTTTGCCTGGCTGTGTGGTTGATTGTGACCTATAGAGC GCGCTATCTTGGCGAACCGCACAAGAAACGACACGAGCACAAATATGCCG CAGCCACTATTCCACTTCAACCAATGCCGGAAAGAAGCATTTCGCACACG TTTTGCTGAATCAGCCTCGTGGCTGTTGGAAGAATGTTGCTCATATTACT TTGCGTCATGTATGTATCTTAAGAGATGACCGTCCATAAGCAATTTCGTC GTGCTTCTCCGTCCAACGCCCCCGCAGGCCGAGGCTATTCCCATCCCGGG AATTCTCGGCGTCGTGGTCGGGCTGGCCATCGGATGGTTCATCTTCCGGG CCGGGAGGGAAGCCAGCCTTAAGAATCTTCTGACCGTCTCTACAGTCATC CTGCTATTCATCGCTGGTGTGTCGAATGGGGGGGTAGCAAGAGTAGCGAC AAGAGTCATGATGCGATTTCATACATTTATATGAATACATAAAAAAATGT GAAAGAGACGCATATACGAAATATGTTACAATCGCTCAACTTTCACATGT ACATACTGTGCCTCGTCGTGTTATGGTTTATGGCATCAGCGGGACTTTTC TCCTATGGTGTTCACGAGCTCCAGGAGCTCGAACTGTTCGGCACTTGGGA TGGGGAACGAAATCACATGGTGAGAGCCGGAACTGAAGGAGATCCAAGTT ATCGCTCGAGACAGGTCATCTGGCCACAGGCTGCTAGTGTGCTTGTGGCG TGTGGCGTAGTGTAATTTATCCCATATGACATGCTATATAATCTAGAGCA TGACGTTACACCATCTTCCAAGAAATCAATCTGTTGAAATATATTCCTTC TCATGTACCCGCTTCTTCCTTTGTCTTGTGCAGAACACGGCGTCCTGGAA CATTTGCGATGTCGCCGATAACGACCACGAGTTCTGGGGTCTCATGCGTG CTCTGTTTGGTTACACGTGCAAGCCAACCCCCGTCGAGATGATCGCGTAC GTCTTATATTGGGTTATGGCCATCACCTACCTGTGCTACAAGTTGCACAA GGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig8315:1557..3263+

>mRNA_H-elongata_contig8315.15950.1 ID=mRNA_H-elongata_contig8315.15950.1|Name=mRNA_H-elongata_contig8315.15950.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1806bp|location=Sequence derived from alignment at H-elongata_contig8315:1557..3263+ (Himanthalia elongata Himel1 dioecious)
GCGGTGGTGATCATTTCAGTATTGCTGCAGTTCCTTAACAAGATCGATAG
GCAGGACCTGAAGCCTGCAGTGTGGAAGGGGGCGTTCACAGGACTTGCGG
GCGCCATCGCCATCGGTATCTGCTTCATTATTGCGTACTACGAGACAAGC
GAACAATTCTTTACGGGAAGGACGGAGTACATCGTCGAAGCAATTCTGGC
GGTGGTGATCATTTCAGTATTGCTGCAGTTCCTTAACAAGATCGATAGGC
AGGACCTGAAGCCTGCAGTGTGGAAGGGGGCGTTCACAGGACTTGCGGGC
GCCATCGCCATCGGTATCTGCTTCATTATTGCGTACTACGAGACAAGCGA
ACAATTCTTTACGGGAAGGACGGAGTACATCGTCGAAGCAATTCTGATGA
TCACGGCATCAGTCATCGTGACGATTCTGTCGGCTTCTATGCTCAAGATC
GCCCACATGCGCGAGAAGTGGGAGAGGAAGCTCCAGGAGGGGATGATCAA
GGCCGAGCAGCAGGGCTCTGACCTGAAGTACTCCTATATGTTCTGGCTGC
CGCTCATCGCAGTACTTCGCGAGGGCATTGAGACCGTCATATTTTTGGCA
GGCACCAGCAGCAGCTACCCGATGATCACGGCATCAGTCATCGTGACGAT
TCTGTCGGCTTCTATGCTCAAGATCGCCCACATGCGCGAGAAGTGGGAGA
GGAAGCTCCAGGAGGGGATGATCAAGGCCGAGCAGCAGGGCTCTGACCTG
AAGTACTCCTATATGTTCTGGCTGCCGCTCATCGCAGTACTTCGCGAGGG
CATTGAGACCGTCATATTTTTGGCAGGCACCAGCAGCAGCTACCCGGCCG
AGGCTATTCCCATCCCGGGAATTCTCGGCGTCGTGGTCGGGCTGGCCATC
GGATGGTTCATCTTCCGGGCCGGGAGGGAAGCCAGCCTTAAGAATCTTCT
GACCGTCTCTACAGTCATCCTGCTATTCATCGCTGGCCGAGGCTATTCCC
ATCCCGGGAATTCTCGGCGTCGTGGTCGGGCTGGCCATCGGATGGTTCAT
CTTCCGGGCCGGGAGGGAAGCCAGCCTTAAGAATCTTCTGACCGTCTCTA
CAGTCATCCTGCTATTCATCGCTGCGGGACTTTTCTCCTATGGTGTTCAC
GAGCTCCAGGAGCTCGAACTGTTCGGCACTTGGGATGGGGAACGAAATCA
CATGGTGAGAGCCGGAACTGAAGGAGATCCAAGTTATCGCTCGAGACAGG
TCATCTGGCCACAGGCTGCTAGTGTGCTTGTGGCGTGTGGCCGGGACTTT
TCTCCTATGGTGTTCACGAGCTCCAGGAGCTCGAACTGTTCGGCACTTGG
GATGGGGAACGAAATCACATGGTGAGAGCCGGAACTGAAGGAGATCCAAG
TTATCGCTCGAGACAGGTCATCTGGCCACAGGCTGCTAGTGTGCTTGTGG
CGTGTGGCAACACGGCGTCCTGGAACATTTGCGATGTCGCCGATAACGAC
CACGAGTTCTGGGGTCTCATGCGTGCTCTGTTTGGTTACACGTGCAAGCC
AACCCCCGTCGAGATGATCGCGTACGTCTTATATTGGGTTATGGCCATCA
CCTACCTGTGCTACAAGTTGCACAAGGGGTGAAACACGGCGTCCTGGAAC
ATTTGCGATGTCGCCGATAACGACCACGAGTTCTGGGGTCTCATGCGTGC
TCTGTTTGGTTACACGTGCAAGCCAACCCCCGTCGAGATGATCGCGTACG
TCTTATATTGGGTTATGGCCATCACCTACCTGTGCTACAAGTTGCACAAG
GGGTGA
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