mRNA_H-elongata_contig82974.15933.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82974.15933.1
Unique NamemRNA_H-elongata_contig82974.15933.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82974.15933.1 vs. uniprot
Match: D8LKL6_ECTSI (Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL6_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 2.390e-53
Identity = 79/125 (63.20%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    1 EFLRDPQELAMFKSMAAEDGWCVNFDKGSRSCKIYDDRPRFCRVEAETFGDMYGVEPEEMDDFCASCCRDQIDEVYGSRSTEMRAFTGALAALARGERPVPERNPFGGDEQAIGK-QIRDWGLDE 372
            E+L DP+E  ++ SM   DGWC +FDK SR+C +Y DRPRFCRVE ETFG MYGVEPE+MDDFC+SCC +QI +VYG+ S E+R F  ALAAL RGERP P+ + FGGD +  G+ QIRDWGL+E
Sbjct:  156 EYLPDPEEFDLYMSMTGSDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRVFNEALAALERGERPKPDLSAFGGDLRGQGEGQIRDWGLEE 280          
BLAST of mRNA_H-elongata_contig82974.15933.1 vs. uniprot
Match: UPI001689D9A6 (YkgJ family cysteine cluster protein n=1 Tax=Richelia sinica TaxID=1357545 RepID=UPI001689D9A6)

HSP 1 Score: 128 bits (321), Expect = 9.800e-36
Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   16 PQELAMFKSMAAEDGWCVNFDKGSRSCKIYDDRPRFCRVEAETFGDMYGVEPEEMDDFCASCCRDQIDEVYGSRSTEMRAFTGALAAL 279
            P+EL ++ SM  EDGWC+NFD  SR C+IYD RPRFCRVE ETF DMYG+EPEE++DF   CCR QI+ VYG RS EM  F  A+  +
Sbjct:   30 PEELGLYLSMVGEDGWCINFDHISRECRIYDQRPRFCRVEVETFQDMYGIEPEELNDFAIDCCRQQIEGVYGDRSLEMLRFDQAVGYI 117          
BLAST of mRNA_H-elongata_contig82974.15933.1 vs. uniprot
Match: A0A218Q985_9CYAN (Uncharacterized protein n=2 Tax=unclassified Nodularia TaxID=2656917 RepID=A0A218Q985_9CYAN)

HSP 1 Score: 127 bits (320), Expect = 1.270e-35
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   16 PQELAMFKSMAAEDGWCVNFDKGSRSCKIYDDRPRFCRVEAETFGDMYGVEPEEMDDFCASCCRDQIDEVYGSRSTEMRAFTGAL 270
            P ELA + SM  EDGWC+NFD  SR C IY +RPRFCRVE ETF DMYGVEPEE+DDF   CCR+QI+ VYG RS E+  F  A+
Sbjct:   30 PAELAQYLSMVGEDGWCINFDHSSRECSIYPNRPRFCRVEPETFQDMYGVEPEELDDFAIDCCREQIEGVYGDRSLEILRFNKAI 114          
BLAST of mRNA_H-elongata_contig82974.15933.1 vs. uniprot
Match: A0A7C9TU73_9CYAN (YkgJ family cysteine cluster protein n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9TU73_9CYAN)

HSP 1 Score: 127 bits (319), Expect = 1.860e-35
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1
Query:   16 PQELAMFKSMAAEDGWCVNFDKGSRSCKIYDDRPRFCRVEAETFGDMYGVEPEEMDDFCASCCRDQIDEVYGSRSTEMRAFTGALAA 276
            P+EL ++ SM   DGWC+NFD+ SR C+IY+ RPRFCRVEAE F D+YG+EPEE++DF   CCR+QID VYG RS EM  +  A+A+
Sbjct:   30 PEELTLYLSMVDADGWCINFDRVSRLCRIYEQRPRFCRVEAEVFSDLYGIEPEELNDFAIRCCREQIDAVYGDRSVEMDRYNQAIAS 116          
BLAST of mRNA_H-elongata_contig82974.15933.1 vs. uniprot
Match: UPI0019087D7A (YkgJ family cysteine cluster protein n=1 Tax=Sphaerospermopsis aphanizomenoides TaxID=459663 RepID=UPI0019087D7A)

HSP 1 Score: 127 bits (318), Expect = 2.560e-35
Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   16 PQELAMFKSMAAEDGWCVNFDKGSRSCKIYDDRPRFCRVEAETFGDMYGVEPEEMDDFCASCCRDQIDEVYGSRSTEMRAFTGAL 270
            P+E+ ++ SM  EDGWCVNFD  +R C IY DRPRFCRVEAETF DMYG+EPEE++DF   CCR QID VYG RS EM  F  A+
Sbjct:   30 PEEMGLYLSMVGEDGWCVNFDHETRECTIYADRPRFCRVEAETFQDMYGIEPEELNDFAIDCCRQQIDCVYGDRSLEMIRFDQAV 114          
BLAST of mRNA_H-elongata_contig82974.15933.1 vs. uniprot
Match: UPI00047C8F54 (YkgJ family cysteine cluster protein n=1 Tax=Fischerella sp. PCC 9605 TaxID=1173024 RepID=UPI00047C8F54)

HSP 1 Score: 125 bits (315), Expect = 8.230e-35
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1
Query:   16 PQELAMFKSMAAEDGWCVNFDKGSRSCKIYDDRPRFCRVEAETFGDMYGVEPEEMDDFCASCCRDQIDEVYGSRSTEMRAFTGALAALARG 288
            P+EL ++ SM  E+GWC+NFDK  R C+IY +RPRFCRVE E F DMYG+ PEE++DF   CC++QI+ VYG RS EM  F  A+  LA+G
Sbjct:   30 PEELELYLSMVGEEGWCINFDKNRRECRIYPNRPRFCRVEPEVFEDMYGITPEELNDFAIECCQEQIEGVYGDRSLEMLRFNKAVGYLAKG 120          
BLAST of mRNA_H-elongata_contig82974.15933.1 vs. uniprot
Match: UPI00082F0ABA (YkgJ family cysteine cluster protein n=2 Tax=unclassified Anabaena TaxID=2619674 RepID=UPI00082F0ABA)

HSP 1 Score: 124 bits (312), Expect = 2.090e-34
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   16 PQELAMFKSMAAEDGWCVNFDKGSRSCKIYDDRPRFCRVEAETFGDMYGVEPEEMDDFCASCCRDQIDEVYGSRSTEMRAFTGAL 270
            P+EL M+ SM  EDGWC+NFD  +R C+IY  RPRFCRVE ETF DMYG+EPEE++DF   CCR QI+ VYG RS EM  F  A+
Sbjct:   30 PEELEMYLSMVGEDGWCINFDHITRECRIYAQRPRFCRVETETFQDMYGIEPEELNDFAIDCCRQQIEAVYGDRSLEMLRFDKAV 114          
BLAST of mRNA_H-elongata_contig82974.15933.1 vs. uniprot
Match: A0A1Z4QPC9_9NOST (Uncharacterized protein n=1 Tax=Cylindrospermum sp. NIES-4074 TaxID=2005457 RepID=A0A1Z4QPC9_9NOST)

HSP 1 Score: 124 bits (311), Expect = 2.960e-34
Identity = 53/85 (62.35%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   16 PQELAMFKSMAAEDGWCVNFDKGSRSCKIYDDRPRFCRVEAETFGDMYGVEPEEMDDFCASCCRDQIDEVYGSRSTEMRAFTGAL 270
            P EL ++ SM  E GWCVNFD  +R C+IY+DRPRFCRVE+E F DMYG+EPEE++DF   CCR+QID VYG RS EM  F  A+
Sbjct:   30 PAELELYLSMVGEGGWCVNFDHTTRECRIYNDRPRFCRVESEIFQDMYGIEPEELNDFAIDCCREQIDGVYGDRSLEMLRFDQAV 114          
BLAST of mRNA_H-elongata_contig82974.15933.1 vs. uniprot
Match: A0A1Z4S0S9_9NOSO (Uncharacterized protein n=2 Tax=Nostoc TaxID=1177 RepID=A0A1Z4S0S9_9NOSO)

HSP 1 Score: 123 bits (308), Expect = 8.450e-34
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   16 PQELAMFKSMAAEDGWCVNFDKGSRSCKIYDDRPRFCRVEAETFGDMYGVEPEEMDDFCASCCRDQIDEVYGSRSTEMRAFTGAL 270
            P EL  + SM  EDGWCVNFD  SR C+IY +RPRFCRVE++TF DMYG+EPEE++DF   CCR QI+ VYG RS E+  F  A+
Sbjct:   30 PAELEQYLSMVGEDGWCVNFDHTSRECRIYPNRPRFCRVESDTFQDMYGIEPEELNDFAIDCCRQQIEAVYGDRSLELLRFNQAV 114          
BLAST of mRNA_H-elongata_contig82974.15933.1 vs. uniprot
Match: A0A1Y0RFK2_9CYAN (Zinc/iron-chelating domain-containing protein n=9 Tax=Nostocales TaxID=1161 RepID=A0A1Y0RFK2_9CYAN)

HSP 1 Score: 122 bits (306), Expect = 1.700e-33
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   16 PQELAMFKSMAAEDGWCVNFDKGSRSCKIYDDRPRFCRVEAETFGDMYGVEPEEMDDFCASCCRDQIDEVYGSRSTEMRAFTGAL 270
            P+EL ++ SM  E GWC+N+DK SR C+IY +RPRFCRVE E F DMYG+EPEE++DF   CCR QI+ VYG RS EM  F  A+
Sbjct:   30 PEELELYLSMVGEGGWCINYDKESRECRIYPNRPRFCRVETEVFQDMYGIEPEELNDFAIDCCRQQIEGVYGDRSLEMLRFDQAV 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82974.15933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKL6_ECTSI2.390e-5363.20Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpu... [more]
UPI001689D9A69.800e-3661.36YkgJ family cysteine cluster protein n=1 Tax=Riche... [more]
A0A218Q985_9CYAN1.270e-3564.71Uncharacterized protein n=2 Tax=unclassified Nodul... [more]
A0A7C9TU73_9CYAN1.860e-3559.77YkgJ family cysteine cluster protein n=1 Tax=Oscil... [more]
UPI0019087D7A2.560e-3564.71YkgJ family cysteine cluster protein n=1 Tax=Sphae... [more]
UPI00047C8F548.230e-3557.14YkgJ family cysteine cluster protein n=1 Tax=Fisch... [more]
UPI00082F0ABA2.090e-3462.35YkgJ family cysteine cluster protein n=2 Tax=uncla... [more]
A0A1Z4QPC9_9NOST2.960e-3462.35Uncharacterized protein n=1 Tax=Cylindrospermum sp... [more]
A0A1Z4S0S9_9NOSO8.450e-3461.18Uncharacterized protein n=2 Tax=Nostoc TaxID=1177 ... [more]
A0A1Y0RFK2_9CYAN1.700e-3360.00Zinc/iron-chelating domain-containing protein n=9 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82974contigH-elongata_contig82974:1838..2761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue4.9e-39
Seed eggNOG ortholog2880.D8LKL6
KEGG koko:K06940
EggNOG free text desc.Putative zinc- or iron-chelating domain
EggNOG OGs2RZ66@2759,COG0727@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPutative zinc- or iron-chelating domain containing protein
Ec32 orthologEc-16_003430.1
Exons2
Model size399
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82974.15933.1prot_H-elongata_contig82974.15933.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82974 1838..2731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931236.4817827-CDS-H-elongata_contig82974:1837..19971622931236.4817827-CDS-H-elongata_contig82974:1837..1997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82974 1838..1997 -
1691679754.0676842-CDS-H-elongata_contig82974:1837..19971691679754.0676842-CDS-H-elongata_contig82974:1837..1997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82974 1838..1997 -
1622931236.4985301-CDS-H-elongata_contig82974:2522..27311622931236.4985301-CDS-H-elongata_contig82974:2522..2731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82974 2523..2731 -
1691679754.0927956-CDS-H-elongata_contig82974:2522..27311691679754.0927956-CDS-H-elongata_contig82974:2522..2731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82974 2523..2731 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931236.5158567-UTR-H-elongata_contig82974:2731..27611622931236.5158567-UTR-H-elongata_contig82974:2731..2761Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82974 2732..2761 -
1691679754.1051524-UTR-H-elongata_contig82974:2731..27611691679754.1051524-UTR-H-elongata_contig82974:2731..2761Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82974 2732..2761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82974.15933.1

>prot_H-elongata_contig82974.15933.1 ID=prot_H-elongata_contig82974.15933.1|Name=mRNA_H-elongata_contig82974.15933.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MFKSMAAEDGWCVNFDKGSRSCKIYDDRPRFCRVEAETFGDMYGVEPEEM
DDFCASCCRDQIDEVYGSRSTEMRAFTGALAALARGERPVPERNPFGGDE
QAIGKQIRDWGLDESASDAEQG*
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mRNA from alignment at H-elongata_contig82974:1838..2761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82974.15933.1 ID=mRNA_H-elongata_contig82974.15933.1|Name=mRNA_H-elongata_contig82974.15933.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=924bp|location=Sequence derived from alignment at H-elongata_contig82974:1838..2761- (Himanthalia elongata Himel1 dioecious)
GAATTTCTGCGCGACCCACAGGAGCTGGCGATGTTCAAGTCGATGGCGGC GGAAGACGGGTGGTGCGTGAACTTCGACAAGGGCAGCAGGTCGTGCAAAA TTTACGACGATCGGCCGCGCTTTTGCCGAGTAGAGGCCGAGACCTTCGGA GACATGTACGGCGTGGAGCCCGAGGAAATGGACGACTTCTGCGCCTCGTG TTGTCGTGATCAGATCGATGAAGTATACGGGAGCCGGAGGTGGGTGCGTG TCGCCCCCTTTGCCGCGCGAAGAGAGCGTTCTTGTTGTTCTATACTAACA ACGCTATAATAATATTGCATCCTGTTGTATGCGCTGCTGTATATGCTGAT GGGTTAACTGTTTGCGTGAATCTGAGCGCCGGTGTGTGATTTAGCCGATA ACGGGAAATCGGACGCACTGGAGCTGAAATTGAACTGAATTCGAACACGT AGCGTGGGGTCCCGGTCGTGATGACGTCATATATGGAGCAAGCCTGTAAA TTGGAGAGATACATGAAGGCGGTTACTACCCCGGGCGGTTTTATATATAT ATATAATATTTATATACTTGTACGAAGTAATATTTTTGGGGGGGTGGGGG TGGATATTGCTCGAGATTGTAAATGTGTATCTCTTGATTTTGATCGACGA ACCAGCCCACCACCACTCTGCCGCTGCTTCTCACGATCGTGTCGTGTCGG CCCAATGACAATTCCGTCGCCGCCTTTTGGGTCCACGGTTGCTGCTTGAT CACGCCCCTTTCAGCACGGAGATGCGGGCGTTCACGGGCGCCCTGGCAGC GCTTGCGCGTGGAGAGCGGCCAGTCCCAGAGCGCAACCCGTTTGGTGGGG ACGAGCAGGCGATCGGGAAGCAGATACGAGACTGGGGCCTTGACGAAAGC GCGTCTGATGCCGAGCAAGGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig82974:1838..2761-

>mRNA_H-elongata_contig82974.15933.1 ID=mRNA_H-elongata_contig82974.15933.1|Name=mRNA_H-elongata_contig82974.15933.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig82974:1838..2761- (Himanthalia elongata Himel1 dioecious)
ATGTTCAAGTCGATGGCGGCGGAAGACGGGTGGTGCGTGAACTTCGACAA
GGGCAGCAGGTCGTGCAAAATTTACGACGATCGGCCGCGCTTTTGCCGAG
TAGAGGCCGAGACCTTCGGAGACATGTACGGCGTGGAGCCCGAGGAAATG
GACGACTTCTGCGCCTCGTGTTGTCGTGATCAGATCGATGAAGTATACGG
GAGCCGGAGATGTTCAAGTCGATGGCGGCGGAAGACGGGTGGTGCGTGAA
CTTCGACAAGGGCAGCAGGTCGTGCAAAATTTACGACGATCGGCCGCGCT
TTTGCCGAGTAGAGGCCGAGACCTTCGGAGACATGTACGGCGTGGAGCCC
GAGGAAATGGACGACTTCTGCGCCTCGTGTTGTCGTGATCAGATCGATGA
AGTATACGGGAGCCGGAGCACGGAGATGCGGGCGTTCACGGGCGCCCTGG
CAGCGCTTGCGCGTGGAGAGCGGCCAGTCCCAGAGCGCAACCCGTTTGGT
GGGGACGAGCAGGCGATCGGGAAGCAGATACGAGACTGGGGCCTTGACGA
AAGCGCGTCTGATGCCGAGCAAGGATAACACGGAGATGCGGGCGTTCACG
GGCGCCCTGGCAGCGCTTGCGCGTGGAGAGCGGCCAGTCCCAGAGCGCAA
CCCGTTTGGTGGGGACGAGCAGGCGATCGGGAAGCAGATACGAGACTGGG
GCCTTGACGAAAGCGCGTCTGATGCCGAGCAAGGATAA
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