mRNA_H-elongata_contig8212.15875.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 232 bits (591), Expect = 2.220e-66 Identity = 125/199 (62.81%), Postives = 148/199 (74.37%), Query Frame = 3
Query: 66 MVHALRTNARIPDKTSCINNMRDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLE-DSNACVHDRC-------TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVAT 638
MVHA+R +AR+P+K C+ MR V+K MM K+S L++GE VCIT++GWTSCANDTYMSLT +LITSA KLVTLSV+CSKS GTTTG+ALA G+KATVAKHGL GKV +TT+CEP MVKM RLL D+ C TSSI+FNG V K M LARGLV Y TSS AD L QFV+ YLG + K+V+QDV T
Sbjct: 1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT 199
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 169 bits (428), Expect = 4.850e-45 Identity = 102/226 (45.13%), Postives = 138/226 (61.06%), Query Frame = 3
Query: 39 MLEDACFRNMVHALRTNARIPDKTSCINNMRDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRC-------TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVI 695
M+E+ F MV L++ A +P K + +R ++K + ++ L GE+V +T++GWTS +NDTYM T + I+S LV L VEC K G TTGE L E +KA +A++GL + V TT+CEP MVK RLLE++ H C +S F G GVSKA+ALAR +V Y+ SS +D L Q +R + E+KKVVQDV TR WST + I RL LRR I
Sbjct: 1 MVENEHFIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPI 225
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 142 bits (357), Expect = 1.760e-34 Identity = 92/218 (42.20%), Postives = 130/218 (59.63%), Query Frame = 3
Query: 66 MVHALRTNARIPDKTSCINNMRDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLE-DSNACVHDRC-------TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVI 695
MV AL A++P + ++ MR V+ ++ ++++ +L E+V ITT+GWTS N++YMSLT++ I KL LS++C+K GTTTGE LA + V +H L G+V+ T+CEP M+K RLLE D + H C T+S +FNG + A+ LAR LV Y SS +A L Q I L E V+QDV TR WST +M+ RL L + I
Sbjct: 1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGI-LQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAI 216
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 142 bits (359), Expect = 3.470e-34 Identity = 88/182 (48.35%), Postives = 112/182 (61.54%), Query Frame = 3
Query: 171 LKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRC-------TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVI 695
+ GE+V +T++GWT +NDTYMS T + I+S LV L +EC K T GE L E +KA +A++GL G+ V ITT+CE MVK RLLE++ H C +S F G GVSKA+ALARG+V Y+ SS +D L Q I + E+K VVQDV TR WST I RL LRR I
Sbjct: 1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDI-VQVERKNVVQDVETRWWSTYVSICRLISLRRPI 181
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 138 bits (348), Expect = 2.630e-33 Identity = 89/232 (38.36%), Postives = 135/232 (58.19%), Query Frame = 3
Query: 24 STAF*MLEDACFRNMVHALRTNARIPDKTSCINNMRDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNA------CVHDRC--TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVI 695
+F +E F +V L AR P + + + MR+++K++ ++++ +L EYV ITT+GWTS +N++YMSLT++ I +L LS+ C+K G+T GE LA + + + +HGL G+V T+CEP MVK RLLE + C + R T+S +FNG + A+A AR +V Y SS ++ L F+ I L V+QDV TR WS+ +MI RL L + I
Sbjct: 23 GVSFLFVEYPEFHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGI-LKLSPLSVLQDVETRWWSSWAMIERLLYLMKAI 252
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 124 bits (311), Expect = 5.740e-29 Identity = 77/164 (46.95%), Postives = 100/164 (60.98%), Query Frame = 3
Query: 213 SCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRC-------TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPEL 683
S +NDTYM+ T + I+S LV L +E K G TTGE L E +KA +A++GL G+ V TT+CEP+MVK RLLE++ H C +S F G GVSKA+AL RG+V Y+ SS ++ L Q I + E+KKVVQDV TR WST I +P L
Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDI-VQVERKKVVQDVETRWWSTPREIDSIPPL 165
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: UPI000DC158A4 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC158A4) HSP 1 Score: 70.9 bits (172), Expect = 6.010e-10 Identity = 56/232 (24.14%), Postives = 107/232 (46.12%), Query Frame = 3
Query: 33 F*MLEDACFRNMVHALRTNARIPDKTSCINNM-----RDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRCTSSILFNG-SGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVIINADA 710
F ++ED F+N++ L ++P + + N+M + + ++N VC+TT+GWTS N+++M +T I L ++ + C K T + LA LK T+ K ++ KV + ++ P +V +R + C + ++ G ++ + +V+ + SS L + +G K+ QDV TR ST M R+ E++ +++ A
Sbjct: 10 FDIVEDQEFQNLLKMLNGGYKLPSRKTVSNSMIPLLYHQTHEKVQALMTNCFA---VCLTTDGWTSIKNESFMGVTAHFIDENVSLQSVCLGCEKFDDRHTSQNLALFLKNTIQKWSIQNKVAAVVSDNAPNIVGAIRECNFRHVSCFAHCVNLVVQQGLKDINNIKKKVKSIVEYFKRSSHAQSKLLAMQQ-QMGLSPLKLKQDVVTRWNSTHDMFKRIIEIKDAVVSTLA 237
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: UPI0008116268 (zinc finger BED domain-containing protein 1-like n=4 Tax=Rhagoletis TaxID=28609 RepID=UPI0008116268) HSP 1 Score: 63.2 bits (152), Expect = 2.170e-7 Identity = 69/241 (28.63%), Postives = 111/241 (46.06%), Query Frame = 3
Query: 33 F*MLEDACFRNMVHALRTNARIPDKTSCINNMRDVRKSMMTKISNLLKG---------EYVCITTNGWTSCANDTYMSLTISLITSA*KL--VTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDS---------NACVHDRCTSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVI 695
F ++ D FR ++H + ++P KT +RDV + K+ LKG EYV ITT+GWTS AN++Y+++T I + +L LS T +A+ ++ + + GL GKVV I T+ + M K LLE N V D IL G ++K ++ + + ST++ Q + LG ++Q+V+TR S +I RL E + +
Sbjct: 116 FSIVNDTGFRALMHKMDPRYKLPSKTY----LRDVS---LPKVYESLKGQLQSALECVEYVAITTDGWTSKANESYLTITCHFINTEFQLNSAVLSTSXXXXXXXHTAANIADSIRVVLTEWGLMGKVVSIVTDNDSTMKKACELLEVKHFPCFAHTVNLLVQDVLKLEIL--GPILTKCKSIVSFMKR--STTAMAKFKQAQNIESPLG-----LIQEVSTRWNSAFQIIKRLLETMQAL 340
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: UPI001FBB977E (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pieris napi TaxID=78633 RepID=UPI001FBB977E) HSP 1 Score: 62.8 bits (151), Expect = 2.700e-7 Identity = 58/237 (24.47%), Postives = 117/237 (49.37%), Query Frame = 3
Query: 30 AF*MLEDACFRNMVHALRTNARIPDKTSCINNM-----RDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRCTSS----ILFNG-SGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVIINADA 710
AF ++E+ F+N+ + + IP + + N++ + ++ ++ ++S+ E VC+TT+GWTS N +++SLT I +L ++ + C++ T E L L+ V K GL K+ + T+ ++ VR S H C + ++F+ + + + + +V+ + SS ADH + ++ L K+ Q V TR ST M+ R+ +++ +++ A
Sbjct: 142 AFCIVEEDEFKNIFKLILPSYSIPTRKTISNSLIPKFYQTTKEKVLLQLSS---AEAVCLTTDGWTSMNNVSFISLTAHFIDEKTQLQSVLLGCTEFHERKTKENLLNFLQTEVLKWGLSNKITAVITDNAANILAAVR----STTWRHFSCFAHDINLVVFHSLTTIQDELEKVKAIVQYFKHSS-YADHKLKAMQAQLELPLLKLKQSVVTRWNSTYDMLERILKIKDAVVSTLA 370
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A8B8BD94_CRAVI (zinc finger BED domain-containing protein 1-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BD94_CRAVI) HSP 1 Score: 62.8 bits (151), Expect = 3.160e-7 Identity = 67/262 (25.57%), Postives = 121/262 (46.18%), Query Frame = 3
Query: 33 F*MLEDACFRNMVHALRTNARIPDKTSCINN-MRDVRKSMMTKI-SNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRCTSSILFNGSG-------VSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVIINADANASRVGYLRGCPSYLGAIHES-VHSVE 788
F ++E++ F+N+V+ + IP + + M ++ +S+ T + S L K V ITT+GWTS A ++Y+++T S I S KL ++ A + TG +A L + + L ++T N M ++++ +H C + L G VSK +A R +V + SS L + ++ L + K++ DV TR S M+ R E + + A + LRG + + E+ + ++E
Sbjct: 126 FSVVENSGFKNLVNVMEPRYNIPSRQYFSDRAMPELYQSVKTSVLSELAKASSVAITTDGWTSRATESYITITSSHIDSEWKLKNFVLQTRSMAESHTGVNVANVLLEAIEEWKLPANPPIVTDNAS----NMTVAVKEAGLPLHIGCFAHTLNLACGKALKLGNVSKLLARVRRIVSYFHRSSVACAVLKEKQKM-LSLPEHKLIVDVQTRWNSALDMLTRFLEQQAAVYAALTSKD----LRGKEKDISTLSENDISAIE 378 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8212.15875.1 >prot_H-elongata_contig8212.15875.1 ID=prot_H-elongata_contig8212.15875.1|Name=mRNA_H-elongata_contig8212.15875.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp MPTPVEWAIFEVVLPILEPFMKAYTQLKGRHYVTDSLVAPFIFDLRMALNback to top mRNA from alignment at H-elongata_contig8212:4657..5645+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8212.15875.1 ID=mRNA_H-elongata_contig8212.15875.1|Name=mRNA_H-elongata_contig8212.15875.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=989bp|location=Sequence derived from alignment at H-elongata_contig8212:4657..5645+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8212:4657..5645+ >mRNA_H-elongata_contig8212.15875.1 ID=mRNA_H-elongata_contig8212.15875.1|Name=mRNA_H-elongata_contig8212.15875.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig8212:4657..5645+ (Himanthalia elongata Himel1 dioecious)back to top |