mRNA_H-elongata_contig8212.15875.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8212.15875.1
Unique NamemRNA_H-elongata_contig8212.15875.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 2.220e-66
Identity = 125/199 (62.81%), Postives = 148/199 (74.37%), Query Frame = 3
Query:   66 MVHALRTNARIPDKTSCINNMRDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLE-DSNACVHDRC-------TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVAT 638
            MVHA+R +AR+P+K  C+  MR V+K MM K+S L++GE VCIT++GWTSCANDTYMSLT +LITSA KLVTLSV+CSKS GTTTG+ALA G+KATVAKHGL GKV  +TT+CEP MVKM RLL  D+       C       TSSI+FNG  V K M LARGLV  Y TSS  AD L QFV+ YLG + K+V+QDV T
Sbjct:    1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT 199          
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 4.850e-45
Identity = 102/226 (45.13%), Postives = 138/226 (61.06%), Query Frame = 3
Query:   39 MLEDACFRNMVHALRTNARIPDKTSCINNMRDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRC-------TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVI 695
            M+E+  F  MV  L++ A +P K   +  +R ++K +  ++   L GE+V +T++GWTS +NDTYM  T + I+S   LV L VEC K  G TTGE L E +KA +A++GL  + V  TT+CEP MVK  RLLE++    H  C        +S  F G GVSKA+ALAR +V  Y+ SS  +D L Q +R  +  E+KKVVQDV TR WST + I RL  LRR I
Sbjct:    1 MVENEHFIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPI 225          
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.760e-34
Identity = 92/218 (42.20%), Postives = 130/218 (59.63%), Query Frame = 3
Query:   66 MVHALRTNARIPDKTSCINNMRDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLE-DSNACVHDRC-------TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVI 695
            MV AL   A++P +   ++ MR V+ ++ ++++ +L  E+V ITT+GWTS  N++YMSLT++ I    KL  LS++C+K  GTTTGE LA  +   V +H L G+V+   T+CEP M+K  RLLE D +   H  C       T+S +FNG  +  A+ LAR LV  Y  SS +A  L Q   I L  E   V+QDV TR WST +M+ RL  L + I
Sbjct:    1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGI-LQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAI 216          
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.470e-34
Identity = 88/182 (48.35%), Postives = 112/182 (61.54%), Query Frame = 3
Query:  171 LKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRC-------TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVI 695
            + GE+V +T++GWT  +NDTYMS T + I+S   LV L +EC K    T GE L E +KA +A++GL G+ V ITT+CE  MVK  RLLE++    H  C        +S  F G GVSKA+ALARG+V  Y+ SS  +D L Q   I +  E+K VVQDV TR WST   I RL  LRR I
Sbjct:    1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDI-VQVERKNVVQDVETRWWSTYVSICRLISLRRPI 181          
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 2.630e-33
Identity = 89/232 (38.36%), Postives = 135/232 (58.19%), Query Frame = 3
Query:   24 STAF*MLEDACFRNMVHALRTNARIPDKTSCINNMRDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNA------CVHDRC--TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVI 695
              +F  +E   F  +V  L   AR P + + +  MR+++K++ ++++ +L  EYV ITT+GWTS +N++YMSLT++ I    +L  LS+ C+K  G+T GE LA  + + + +HGL G+V    T+CEP MVK  RLLE   +      C + R   T+S +FNG  +  A+A AR +V  Y  SS ++  L  F+ I L      V+QDV TR WS+ +MI RL  L + I
Sbjct:   23 GVSFLFVEYPEFHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGI-LKLSPLSVLQDVETRWWSSWAMIERLLYLMKAI 252          
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 5.740e-29
Identity = 77/164 (46.95%), Postives = 100/164 (60.98%), Query Frame = 3
Query:  213 SCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRC-------TSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPEL 683
            S +NDTYM+ T + I+S   LV L +E  K  G TTGE L E +KA +A++GL G+ V  TT+CEP+MVK  RLLE++    H  C        +S  F G GVSKA+AL RG+V  Y+ SS  ++ L Q   I +  E+KKVVQDV TR WST   I  +P L
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDI-VQVERKKVVQDVETRWWSTPREIDSIPPL 165          
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: UPI000DC158A4 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC158A4)

HSP 1 Score: 70.9 bits (172), Expect = 6.010e-10
Identity = 56/232 (24.14%), Postives = 107/232 (46.12%), Query Frame = 3
Query:   33 F*MLEDACFRNMVHALRTNARIPDKTSCINNM-----RDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRCTSSILFNG-SGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVIINADA 710
            F ++ED  F+N++  L    ++P + +  N+M         + +   ++N      VC+TT+GWTS  N+++M +T   I     L ++ + C K     T + LA  LK T+ K  ++ KV  + ++  P +V  +R     +      C + ++  G   ++      + +V+ +  SS     L    +  +G    K+ QDV TR  ST  M  R+ E++  +++  A
Sbjct:   10 FDIVEDQEFQNLLKMLNGGYKLPSRKTVSNSMIPLLYHQTHEKVQALMTNCFA---VCLTTDGWTSIKNESFMGVTAHFIDENVSLQSVCLGCEKFDDRHTSQNLALFLKNTIQKWSIQNKVAAVVSDNAPNIVGAIRECNFRHVSCFAHCVNLVVQQGLKDINNIKKKVKSIVEYFKRSSHAQSKLLAMQQ-QMGLSPLKLKQDVVTRWNSTHDMFKRIIEIKDAVVSTLA 237          
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: UPI0008116268 (zinc finger BED domain-containing protein 1-like n=4 Tax=Rhagoletis TaxID=28609 RepID=UPI0008116268)

HSP 1 Score: 63.2 bits (152), Expect = 2.170e-7
Identity = 69/241 (28.63%), Postives = 111/241 (46.06%), Query Frame = 3
Query:   33 F*MLEDACFRNMVHALRTNARIPDKTSCINNMRDVRKSMMTKISNLLKG---------EYVCITTNGWTSCANDTYMSLTISLITSA*KL--VTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDS---------NACVHDRCTSSILFNGSGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVI 695
            F ++ D  FR ++H +    ++P KT     +RDV    + K+   LKG         EYV ITT+GWTS AN++Y+++T   I +  +L    LS          T   +A+ ++  + + GL GKVV I T+ +  M K   LLE           N  V D     IL  G  ++K  ++   + +  ST++       Q +   LG     ++Q+V+TR  S   +I RL E  + +
Sbjct:  116 FSIVNDTGFRALMHKMDPRYKLPSKTY----LRDVS---LPKVYESLKGQLQSALECVEYVAITTDGWTSKANESYLTITCHFINTEFQLNSAVLSTSXXXXXXXHTAANIADSIRVVLTEWGLMGKVVSIVTDNDSTMKKACELLEVKHFPCFAHTVNLLVQDVLKLEIL--GPILTKCKSIVSFMKR--STTAMAKFKQAQNIESPLG-----LIQEVSTRWNSAFQIIKRLLETMQAL 340          
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: UPI001FBB977E (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pieris napi TaxID=78633 RepID=UPI001FBB977E)

HSP 1 Score: 62.8 bits (151), Expect = 2.700e-7
Identity = 58/237 (24.47%), Postives = 117/237 (49.37%), Query Frame = 3
Query:   30 AF*MLEDACFRNMVHALRTNARIPDKTSCINNM-----RDVRKSMMTKISNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRCTSS----ILFNG-SGVSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVIINADA 710
            AF ++E+  F+N+   +  +  IP + +  N++     +  ++ ++ ++S+    E VC+TT+GWTS  N +++SLT   I    +L ++ + C++     T E L   L+  V K GL  K+  + T+    ++  VR    S    H  C +     ++F+  + +   +   + +V+ +  SS  ADH  + ++  L     K+ Q V TR  ST  M+ R+ +++  +++  A
Sbjct:  142 AFCIVEEDEFKNIFKLILPSYSIPTRKTISNSLIPKFYQTTKEKVLLQLSS---AEAVCLTTDGWTSMNNVSFISLTAHFIDEKTQLQSVLLGCTEFHERKTKENLLNFLQTEVLKWGLSNKITAVITDNAANILAAVR----STTWRHFSCFAHDINLVVFHSLTTIQDELEKVKAIVQYFKHSS-YADHKLKAMQAQLELPLLKLKQSVVTRWNSTYDMLERILKIKDAVVSTLA 370          
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Match: A0A8B8BD94_CRAVI (zinc finger BED domain-containing protein 1-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BD94_CRAVI)

HSP 1 Score: 62.8 bits (151), Expect = 3.160e-7
Identity = 67/262 (25.57%), Postives = 121/262 (46.18%), Query Frame = 3
Query:   33 F*MLEDACFRNMVHALRTNARIPDKTSCINN-MRDVRKSMMTKI-SNLLKGEYVCITTNGWTSCANDTYMSLTISLITSA*KLVTLSVECSKSAGTTTGEALAEGLKATVAKHGLEGKVVVITTNCEPYMVKMVRLLEDSNACVHDRCTSSILFNGSG-------VSKAMALARGLVKPYSTSS*IADHLPQFVRIYLGFEKKKVVQDVATRQWSTCSMIGRLPELRRVIINADANASRVGYLRGCPSYLGAIHES-VHSVE 788
            F ++E++ F+N+V+ +     IP +    +  M ++ +S+ T + S L K   V ITT+GWTS A ++Y+++T S I S  KL    ++    A + TG  +A  L   + +  L     ++T N       M   ++++   +H  C +  L    G       VSK +A  R +V  +  SS     L +  ++ L   + K++ DV TR  S   M+ R  E +  +  A  +      LRG    +  + E+ + ++E
Sbjct:  126 FSVVENSGFKNLVNVMEPRYNIPSRQYFSDRAMPELYQSVKTSVLSELAKASSVAITTDGWTSRATESYITITSSHIDSEWKLKNFVLQTRSMAESHTGVNVANVLLEAIEEWKLPANPPIVTDNAS----NMTVAVKEAGLPLHIGCFAHTLNLACGKALKLGNVSKLLARVRRIVSYFHRSSVACAVLKEKQKM-LSLPEHKLIVDVQTRWNSALDMLTRFLEQQAAVYAALTSKD----LRGKEKDISTLSENDISAIE 378          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8212.15875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7Y8_9PHAE2.220e-6662.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE4.850e-4545.13Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LCS5_ECTSI1.760e-3442.20Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JHP9_9PHAE3.470e-3448.35Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KUY5_9PHAE2.630e-3338.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVI1_9PHAE5.740e-2946.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000DC158A46.010e-1024.14zinc finger BED domain-containing protein 1-like n... [more]
UPI00081162682.170e-728.63zinc finger BED domain-containing protein 1-like n... [more]
UPI001FBB977E2.700e-724.47E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pieris n... [more]
A0A8B8BD94_CRAVI3.160e-725.57zinc finger BED domain-containing protein 1-like n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8212contigH-elongata_contig8212:4657..5645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size966
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8212.15875.1prot_H-elongata_contig8212.15875.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8212 5385..5645 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.7175136-UTR-H-elongata_contig8212:4656..53561622931228.7175136-UTR-H-elongata_contig8212:4656..5356Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8212 4657..5356 +
1691679750.7571664-UTR-H-elongata_contig8212:4656..53561691679750.7571664-UTR-H-elongata_contig8212:4656..5356Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8212 4657..5356 +
1622931228.7342465-UTR-H-elongata_contig8212:5379..53841622931228.7342465-UTR-H-elongata_contig8212:5379..5384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8212 5380..5384 +
1691679750.7666073-UTR-H-elongata_contig8212:5379..53841691679750.7666073-UTR-H-elongata_contig8212:5379..5384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8212 5380..5384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.755937-CDS-H-elongata_contig8212:5384..56451622931228.755937-CDS-H-elongata_contig8212:5384..5645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8212 5385..5645 +
1691679750.776013-CDS-H-elongata_contig8212:5384..56451691679750.776013-CDS-H-elongata_contig8212:5384..5645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8212 5385..5645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8212.15875.1

>prot_H-elongata_contig8212.15875.1 ID=prot_H-elongata_contig8212.15875.1|Name=mRNA_H-elongata_contig8212.15875.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MPTPVEWAIFEVVLPILEPFMKAYTQLKGRHYVTDSLVAPFIFDLRMALN
DAVDDNSELSASDDAGITTARMVAMSCVEALQKYFVN
back to top

mRNA from alignment at H-elongata_contig8212:4657..5645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8212.15875.1 ID=mRNA_H-elongata_contig8212.15875.1|Name=mRNA_H-elongata_contig8212.15875.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=989bp|location=Sequence derived from alignment at H-elongata_contig8212:4657..5645+ (Himanthalia elongata Himel1 dioecious)
GTCCGTATTTACTGTTCCTGCTTTCCACAGCTTTTTAGATGCTCGAGGAC GCATGTTTTCGGAACATGGTGCATGCTCTCCGCACCAACGCCCGTATTCC AGACAAGACTAGCTGCATCAACAACATGCGCGACGTAAGGAAGAGCATGA TGACGAAGATCTCCAACCTCCTGAAGGGTGAGTACGTTTGCATCACTACG AATGGCTGGACCTCCTGCGCCAACGACACGTACATGTCGCTGACCATCAG CTTGATAACCAGTGCGTAGAAGCTCGTCACCTTATCTGTGGAGTGCAGCA AGTCGGCGGGAACAACGACTGGGGAGGCTCTCGCTGAAGGTCTCAAAGCG ACGGTGGCGAAGCATGGGTTGGAGGGTAAGGTCGTTGTGATTACCACTAA TTGCGAGCCTTATATGGTCAAGATGGTACGCCTTCTCGAAGACAGCAACG CTTGCGTTCACGACCGTTGCACTAGCTCTATTTTGTTCAACGGGTCGGGA GTCTCGAAGGCAATGGCCTTGGCCCGCGGTCTGGTGAAGCCTTACTCGAC GTCAAGTTAAATTGCCGACCATCTCCCCCAGTTCGTCAGGATTTACCTCG GCTTTGAAAAGAAGAAGGTGGTTCAAGACGTGGCGACCAGGCAGTGGTCG ACGTGCAGCATGATCGGGCGGCTACCAGAACTTAGGAGGGTAATCATCAA GCCTGAGGAGGAGGACAAGCTAGCGCTGATGCCAACGCCAGTAGAGTGGG CTATCTTCGAGGTTGTCCTTCCTATCTTGGAGCCATTCATGAAAGCGTAC ACTCAGTTGAAGGGCCGCCATTACGTGACGGATAGCTTGGTTGCACCATT CATTTTCGACCTCCGCATGGCCCTCAACGATGCGGTGGACGACAATTCTG AATTGTCTGCAAGCGACGACGCCGGCATCACCACAGCAAGAATGGTGGCG ATGTCGTGCGTCGAGGCGCTTCAAAAATATTTTGTCAAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8212:4657..5645+

>mRNA_H-elongata_contig8212.15875.1 ID=mRNA_H-elongata_contig8212.15875.1|Name=mRNA_H-elongata_contig8212.15875.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig8212:4657..5645+ (Himanthalia elongata Himel1 dioecious)
ATGCCAACGCCAGTAGAGTGGGCTATCTTCGAGGTTGTCCTTCCTATCTT
GGAGCCATTCATGAAAGCGTACACTCAGTTGAAGGGCCGCCATTACGTGA
CGGATAGCTTGGTTGCACCATTCATTTTCGACCTCCGCATGGCCCTCAAC
GATGCGGTGGACGACAATTCTGAATTGTCTGCAAGCGACGACGCCGGCAT
CACCACAGCAAGAATGGTGGCGATGTCGTGCGTCGAGGCGCTTCAAAAAT
ATTTTGTCAATATGCCAACGCCAGTAGAGTGGGCTATCTTCGAGGTTGTC
CTTCCTATCTTGGAGCCATTCATGAAAGCGTACACTCAGTTGAAGGGCCG
CCATTACGTGACGGATAGCTTGGTTGCACCATTCATTTTCGACCTCCGCA
TGGCCCTCAACGATGCGGTGGACGACAATTCTGAATTGTCTGCAAGCGAC
GACGCCGGCATCACCACAGCAAGAATGGTGGCGATGTCGTGCGTCGAGGC
GCTTCAAAAATATTTTGTCAAT
back to top