mRNA_H-elongata_contig82054.15868.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82054.15868.1
Unique NamemRNA_H-elongata_contig82054.15868.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE)

HSP 1 Score: 162 bits (411), Expect = 5.260e-49
Identity = 84/103 (81.55%), Postives = 97/103 (94.17%), Query Frame = 1
Query:    1 FDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGDLGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKNEGENEQRK 309
            FDSMERDLMAPSGMSSRF T  FPGSS+AL+SA+P++GV+G LGMNLDFHET+KG+ELSADLPGMKK DI VDI++ESGVLTVTGER+QEREEK+EG+NEQRK
Sbjct:   20 FDSMERDLMAPSGMSSRFHTMDFPGSSVALVSAVPSMGVEGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRK 122          
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.210e-23
Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    1 FDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGD----LGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKNEGENEQRK 309
            F S+ER+++AP G++SRFPT      +  +    PT  + GD    LGM+LDFHET  GFEL ADLPGMKK D+++D++ ESGVLTV+GER+ E+EEK +G++  RK
Sbjct:   24 FGSIEREMLAPWGLASRFPT------TRDMFPTFPT-SLFGDGSRSLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEKGDGKDGDRK 123          
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A6H5JPQ3_9PHAE (HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.150e-17
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   22 LMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGDLGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQERE 276
            ++AP G +SRFPT      S++  S++   G +  L MNLDFHET  GFEL ADLPGMK+ D+++D++ ESGVLTV+GER+ +RE
Sbjct:    1 MLAPWGFASRFPTARDMVPSVS--SSLFRDGSR-SLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKRE 82          
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.160e-17
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   22 LMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGDLGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEK 282
            ++AP G++ RFPT      S++  S++   G +  L MNLDFHET  GFEL ADLPGMK+ D+++D++ ESGVLTV+GER+ +REEK
Sbjct:    1 MLAPWGLAFRFPTARDMVPSVS--SSLFRDGSR-SLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEK 84          
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.500e-17
Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    1 FDSMERDLMAPSGMSSRFPTGGFPGSSIALLSA-------------------------------IPTVGVK------GDLGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEK 282
            F S+ER+++AP G++SRFPT      S   +                                 +P+V           L MNLDFHET  GFEL ADLPGMK+ D+++D++ ESGVLTV+GER+ EREEK
Sbjct:    9 FGSIEREMLAPWGLASRFPTASHMRYSTLRVHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXRDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEK 139          
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A6J0ZW59_9ROSI (17.3 kDa class I heat shock protein-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J0ZW59_9ROSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.460e-8
Identity = 35/95 (36.84%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 FDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGDLGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKN 285
            F +    +  P  +  R P   FP SS + L+AI        +  ++D+ ETS+     ADLPG+KK ++ V+IE++  VL ++GER+ E+EEKN
Sbjct:    8 FGNRRSSIFDPCSVDLRDPCKDFPFSSFSSLAAIHNPETSAFVNTHIDWKETSEAHVFKADLPGLKKEEVKVEIEDDR-VLQISGERKVEKEEKN 101          
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A2H6B979_9BACT (Spore protein SP21 n=1 Tax=bacterium HR41 TaxID=2035436 RepID=A0A2H6B979_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 4.360e-8
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 1
Query:  139 LDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKNEG 291
            +D +ET   + L ADLPG+ + D+++++EN  GVLT++GERR EREEK +G
Sbjct:   34 MDLYETDDAYVLKADLPGLSENDVSIEVEN--GVLTISGERRSEREEKRDG 82          
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A0D2UFN1_CAPO3 (Small HspC2 heat shock protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UFN1_CAPO3)

HSP 1 Score: 57.4 bits (137), Expect = 6.450e-8
Identity = 26/46 (56.52%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  139 LDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQERE 276
            +D HE+S G+ +SADLPGMKK +I+V+ EN  G+LT++GE++QE+E
Sbjct:   76 VDVHESSDGYHISADLPGMKKDEISVNCEN--GILTISGEKKQEQE 119          
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A2Z7BS00_9LAMI (17.6 kDa class I heat shock protein 3-like n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BS00_9LAMI)

HSP 1 Score: 54.7 bits (130), Expect = 5.250e-7
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  130 GMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKNE 288
            G ++D+ ET +     ADLPG+KKG++ V++E E GVL ++GER +E+EEKNE
Sbjct:   52 GASIDWKETPEAHVFKADLPGLKKGEVKVEVE-EGGVLQISGERSREQEEKNE 103          
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A2E9ZHE5_9GAMM (Heat-shock protein Hsp20 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E9ZHE5_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 5.930e-7
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  127 LGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKNEG 291
            +GM +D HET   +E+ ADLPG+KKGDI + +EN+  VLTV+  ++ E E+K +G
Sbjct:   37 VGMRVDVHETDDEYEIHADLPGVKKGDINIVLEND--VLTVSASKKTEAEKKKKG 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3VMZ8_FUCSE5.260e-4981.55Heat shock protein 20 n=2 Tax=Fucus serratus TaxID... [more]
D7FUU6_ECTSI2.210e-2352.34Small heat shock protein heat shock protein 20 n=1... [more]
A0A6H5JPQ3_9PHAE1.150e-1752.94HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
A0A6H5KKF0_9PHAE2.160e-1752.87HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JFM4_9PHAE9.500e-1739.69HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6J0ZW59_9ROSI2.460e-836.8417.3 kDa class I heat shock protein-like n=1 Tax=H... [more]
A0A2H6B979_9BACT4.360e-850.98Spore protein SP21 n=1 Tax=bacterium HR41 TaxID=20... [more]
A0A0D2UFN1_CAPO36.450e-856.52Small HspC2 heat shock protein n=1 Tax=Capsaspora ... [more]
A0A2Z7BS00_9LAMI5.250e-750.9417.6 kDa class I heat shock protein 3-like n=1 Tax... [more]
A0A2E9ZHE5_9GAMM5.930e-749.09Heat-shock protein Hsp20 n=1 Tax=Gammaproteobacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82054contigH-elongata_contig82054:598..909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue3e-18
Seed eggNOG ortholog2880.D7FUU6
KEGG koko:K07200,ko:K13993
KEGG Pathwayko04068,ko04141,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04141,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.response to heat
EggNOG OGsCOG0071@1,KOG0710@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.149381-UTR-H-elongata_contig82054:597..6061622931228.149381-UTR-H-elongata_contig82054:597..606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82054 598..606 +
1691679750.5376172-UTR-H-elongata_contig82054:597..6061691679750.5376172-UTR-H-elongata_contig82054:597..606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82054 598..606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.1644316-CDS-H-elongata_contig82054:606..9091622931228.1644316-CDS-H-elongata_contig82054:606..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82054 607..909 +
1691679750.5506637-CDS-H-elongata_contig82054:606..9091691679750.5506637-CDS-H-elongata_contig82054:606..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82054 607..909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82054.15868.1prot_H-elongata_contig82054.15868.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82054 607..909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82054.15868.1

>prot_H-elongata_contig82054.15868.1 ID=prot_H-elongata_contig82054.15868.1|Name=mRNA_H-elongata_contig82054.15868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGDLGMNLDFHETS
KGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKNEGENEQRK
*
back to top

mRNA from alignment at H-elongata_contig82054:598..909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82054.15868.1 ID=mRNA_H-elongata_contig82054.15868.1|Name=mRNA_H-elongata_contig82054.15868.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig82054:598..909+ (Himanthalia elongata Himel1 dioecious)
TTTGACTCTATGGAGCGTGATCTCATGGCACCGTCTGGAATGAGCTCCAG GTTCCCCACCGGCGGCTTTCCCGGAAGCTCAATTGCCTTGCTCTCCGCCA TCCCCACAGTGGGCGTTAAAGGAGACCTCGGCATGAATCTGGACTTCCAT GAGACCAGCAAAGGCTTCGAGCTGAGCGCAGATCTCCCCGGCATGAAGAA GGGGGACATCACGGTGGACATCGAGAACGAGTCCGGCGTCCTGACCGTGA CAGGAGAACGCCGGCAGGAGAGGGAGGAGAAGAACGAAGGCGAAAACGAA CAGCGCAAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig82054:598..909+

>mRNA_H-elongata_contig82054.15868.1 ID=mRNA_H-elongata_contig82054.15868.1|Name=mRNA_H-elongata_contig82054.15868.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig82054:598..909+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCGTGATCTCATGGCACCGTCTGGAATGAGCTCCAGGTTCCCCAC
CGGCGGCTTTCCCGGAAGCTCAATTGCCTTGCTCTCCGCCATCCCCACAG
TGGGCGTTAAAGGAGACCTCGGCATGAATCTGGACTTCCATGAGACCAGC
AAAGGCTTCGAGCTGAGCGCAGATCTCCCCGGCATGAAGAAGGGGGACAT
CACGGTGGACATCGAGAACGAGTCCGGCGTCCTGACCGTGACAGGAGAAC
GCCGGCAGGAGAGGGAGGAGAAGAACGAAGGCGAAAACGAACAGCGCAAG
TGAATGGAGCGTGATCTCATGGCACCGTCTGGAATGAGCTCCAGGTTCCC
CACCGGCGGCTTTCCCGGAAGCTCAATTGCCTTGCTCTCCGCCATCCCCA
CAGTGGGCGTTAAAGGAGACCTCGGCATGAATCTGGACTTCCATGAGACC
AGCAAAGGCTTCGAGCTGAGCGCAGATCTCCCCGGCATGAAGAAGGGGGA
CATCACGGTGGACATCGAGAACGAGTCCGGCGTCCTGACCGTGACAGGAG
AACGCCGGCAGGAGAGGGAGGAGAAGAACGAAGGCGAAAACGAACAGCGC
AAGTGA
back to top