mRNA_H-elongata_contig82054.15868.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE) HSP 1 Score: 162 bits (411), Expect = 5.260e-49 Identity = 84/103 (81.55%), Postives = 97/103 (94.17%), Query Frame = 1
Query: 1 FDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGDLGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKNEGENEQRK 309
FDSMERDLMAPSGMSSRF T FPGSS+AL+SA+P++GV+G LGMNLDFHET+KG+ELSADLPGMKK DI VDI++ESGVLTVTGER+QEREEK+EG+NEQRK
Sbjct: 20 FDSMERDLMAPSGMSSRFHTMDFPGSSVALVSAVPSMGVEGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRK 122
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 2.210e-23 Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 1
Query: 1 FDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGD----LGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKNEGENEQRK 309
F S+ER+++AP G++SRFPT + + PT + GD LGM+LDFHET GFEL ADLPGMKK D+++D++ ESGVLTV+GER+ E+EEK +G++ RK
Sbjct: 24 FGSIEREMLAPWGLASRFPT------TRDMFPTFPT-SLFGDGSRSLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEKGDGKDGDRK 123
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A6H5JPQ3_9PHAE (HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ3_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 1.150e-17 Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 1
Query: 22 LMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGDLGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQERE 276
++AP G +SRFPT S++ S++ G + L MNLDFHET GFEL ADLPGMK+ D+++D++ ESGVLTV+GER+ +RE
Sbjct: 1 MLAPWGFASRFPTARDMVPSVS--SSLFRDGSR-SLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKRE 82
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.160e-17 Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 1
Query: 22 LMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGDLGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEK 282
++AP G++ RFPT S++ S++ G + L MNLDFHET GFEL ADLPGMK+ D+++D++ ESGVLTV+GER+ +REEK
Sbjct: 1 MLAPWGLAFRFPTARDMVPSVS--SSLFRDGSR-SLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEK 84
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 9.500e-17 Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 1
Query: 1 FDSMERDLMAPSGMSSRFPTGGFPGSSIALLSA-------------------------------IPTVGVK------GDLGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEK 282
F S+ER+++AP G++SRFPT S + +P+V L MNLDFHET GFEL ADLPGMK+ D+++D++ ESGVLTV+GER+ EREEK
Sbjct: 9 FGSIEREMLAPWGLASRFPTASHMRYSTLRVHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXRDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEK 139
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A6J0ZW59_9ROSI (17.3 kDa class I heat shock protein-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J0ZW59_9ROSI) HSP 1 Score: 58.2 bits (139), Expect = 2.460e-8 Identity = 35/95 (36.84%), Postives = 55/95 (57.89%), Query Frame = 1
Query: 1 FDSMERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGDLGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKN 285
F + + P + R P FP SS + L+AI + ++D+ ETS+ ADLPG+KK ++ V+IE++ VL ++GER+ E+EEKN
Sbjct: 8 FGNRRSSIFDPCSVDLRDPCKDFPFSSFSSLAAIHNPETSAFVNTHIDWKETSEAHVFKADLPGLKKEEVKVEIEDDR-VLQISGERKVEKEEKN 101
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A2H6B979_9BACT (Spore protein SP21 n=1 Tax=bacterium HR41 TaxID=2035436 RepID=A0A2H6B979_9BACT) HSP 1 Score: 57.4 bits (137), Expect = 4.360e-8 Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 139 LDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKNEG 291
+D +ET + L ADLPG+ + D+++++EN GVLT++GERR EREEK +G
Sbjct: 34 MDLYETDDAYVLKADLPGLSENDVSIEVEN--GVLTISGERRSEREEKRDG 82
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A0D2UFN1_CAPO3 (Small HspC2 heat shock protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UFN1_CAPO3) HSP 1 Score: 57.4 bits (137), Expect = 6.450e-8 Identity = 26/46 (56.52%), Postives = 39/46 (84.78%), Query Frame = 1
Query: 139 LDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQERE 276
+D HE+S G+ +SADLPGMKK +I+V+ EN G+LT++GE++QE+E
Sbjct: 76 VDVHESSDGYHISADLPGMKKDEISVNCEN--GILTISGEKKQEQE 119
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A2Z7BS00_9LAMI (17.6 kDa class I heat shock protein 3-like n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BS00_9LAMI) HSP 1 Score: 54.7 bits (130), Expect = 5.250e-7 Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 130 GMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKNE 288
G ++D+ ET + ADLPG+KKG++ V++E E GVL ++GER +E+EEKNE
Sbjct: 52 GASIDWKETPEAHVFKADLPGLKKGEVKVEVE-EGGVLQISGERSREQEEKNE 103
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Match: A0A2E9ZHE5_9GAMM (Heat-shock protein Hsp20 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E9ZHE5_9GAMM) HSP 1 Score: 54.3 bits (129), Expect = 5.930e-7 Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 127 LGMNLDFHETSKGFELSADLPGMKKGDITVDIENESGVLTVTGERRQEREEKNEG 291
+GM +D HET +E+ ADLPG+KKGDI + +EN+ VLTV+ ++ E E+K +G
Sbjct: 37 VGMRVDVHETDDEYEIHADLPGVKKGDINIVLEND--VLTVSASKKTEAEKKKKG 89 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82054.15868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig82054.15868.1 >prot_H-elongata_contig82054.15868.1 ID=prot_H-elongata_contig82054.15868.1|Name=mRNA_H-elongata_contig82054.15868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp MERDLMAPSGMSSRFPTGGFPGSSIALLSAIPTVGVKGDLGMNLDFHETSback to top mRNA from alignment at H-elongata_contig82054:598..909+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig82054.15868.1 ID=mRNA_H-elongata_contig82054.15868.1|Name=mRNA_H-elongata_contig82054.15868.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig82054:598..909+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig82054:598..909+ >mRNA_H-elongata_contig82054.15868.1 ID=mRNA_H-elongata_contig82054.15868.1|Name=mRNA_H-elongata_contig82054.15868.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig82054:598..909+ (Himanthalia elongata Himel1 dioecious)back to top |