mRNA_H-elongata_contig81926.15860.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81926.15860.1
Unique NamemRNA_H-elongata_contig81926.15860.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81926.15860.1 vs. uniprot
Match: D7G7A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A0_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 6.470e-25
Identity = 86/164 (52.44%), Postives = 98/164 (59.76%), Query Frame = 1 
Query:  619 GADEFSDFQGATGDK---------------SGGITNGRPASAAIGITNPKWRDVSSLVDLGGLSSNTDKKVAQQKQEEQTFQSNNNSFAGLDGFHS-KPQGMGAVRPPAATVSTGLSGGVLSXXXXXXGVSGFQQQQQQHQA----MQGGWMGA-QYGMGIPSG 1047
            G ++FSDFQG++                  +G  TNG        +TNPKWRDVSSLVDLGGLSSNTDKKVA+QK  EQTFQSNNNSFAGLDGF + +PQGMG  RP +    TGLSGG  +      G+ G QQ           MQGGWMGA Q GMG   G
Sbjct:  309 GNEDFSDFQGSSSXXXXXXXXXXXXXXXXXTGAATNGA-------VTNPKWRDVSSLVDLGGLSSNTDKKVAEQKVVEQTFQSNNNSFAGLDGFKAPQPQGMGMNRPLSGM--TGLSGGAGTGMMMGGGM-GVQQPXXXXXXXXXXMQGGWMGAPQQGMGGAGG 462
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BLAST of mRNA_H-elongata_contig81926.15860.1 vs. uniprot
Match: A0A6H5JZR7_9PHAE (ENTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.790e-13
Identity = 89/235 (37.87%), Postives = 99/235 (42.13%), Query Frame = 1 
Query:  151 ASFPDLLGGDLLTPAPAPAVA----AGGQLENLFATPAVIAPANGAVGGGGGMDSFDPRGGGSAVPAVGVPAPTAAA-------------GGFGHEFVGFATAPVASAAPVAVRVNVSGCAFGHAADPFAATPAPVLSGRGVSGVSXXXGSNFLGMTNTVGLTAAAAASSSNGGADEFSDFQGATGDKSGGITNGRPASAAIG------ITNPKWRDVSSLVDLGGLSSNTDKKV 786
            A  PDLLGGD LT  PAP       AGG   ++FA     APANG   G G  D FDPRG                              G FG +F GF+  P A   P+                PFA                XXX        N  G   A A S+ N   ++FSDFQG +G   GG      AS   G      +TNPKWRDVSSLVDLGGLSSNTDKKV
Sbjct:  340 APVPDLLGGDFLTSDPAPTAXXXXXAGGGFGDMFAA----APANGXXSGSG-FDGFDPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFGQDFSGFSAVPAAGQ-PLGAXXXXXXXXXXX--XPFAXXXXXXXXXXXXXXXXXXXXXXXFSGNNGNGAVHARAPSTGN---EDFSDFQGCSGAPGGGGETTGAASGGTGAATNGAVTNPKWRDVSSLVDLGGLSSNTDKKV 563
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81926.15860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7A0_ECTSI6.470e-2552.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZR7_9PHAE3.790e-1337.87ENTH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81926contigH-elongata_contig81926:569..2619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue2.3e-24
Seed eggNOG ortholog2880.D7G7A0
KEGG koko:K12471,ko:K12486,ko:K14297
KEGG TC1.I.1
KEGG Pathwayko03013,ko04144,ko05164,map03013,map04144,map05164
KEGG ModuleM00427
EggNOG free text desc.lipid binding
EggNOG OGsKOG2056@1,KOG2056@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-04_003610.1
Exons3
Model size1230
Cds size1230
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81926.15860.1prot_H-elongata_contig81926.15860.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81926 569..2619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931227.1881616-CDS-H-elongata_contig81926:568..10271622931227.1881616-CDS-H-elongata_contig81926:568..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81926 569..1027 +
1691679750.2059886-CDS-H-elongata_contig81926:568..10271691679750.2059886-CDS-H-elongata_contig81926:568..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81926 569..1027 +
1622931227.202247-CDS-H-elongata_contig81926:1369..16931622931227.202247-CDS-H-elongata_contig81926:1369..1693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81926 1370..1693 +
1691679750.2204196-CDS-H-elongata_contig81926:1369..16931691679750.2204196-CDS-H-elongata_contig81926:1369..1693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81926 1370..1693 +
1622931227.218085-CDS-H-elongata_contig81926:2172..26191622931227.218085-CDS-H-elongata_contig81926:2172..2619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81926 2173..2619 +
1691679750.2291806-CDS-H-elongata_contig81926:2172..26191691679750.2291806-CDS-H-elongata_contig81926:2172..2619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81926 2173..2619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81926.15860.1

>prot_H-elongata_contig81926.15860.1 ID=prot_H-elongata_contig81926.15860.1|Name=mRNA_H-elongata_contig81926.15860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=410bp
KTSTQSKRERKKTSGSKLAIKIKDKNASASASSSAAAPAPAEIPAAAATP
ASFPDLLGGDLLTPAPAPAVAAGGQLENLFATPAVIAPANGAVGGGGGMD
SFDPRGGGSAVPAVGVPAPTAAAGGFGHEFVGFATAPVASAAPVAVRVNV
SGCAFGHAADPFAATPAPVLSGRGVSGVSGVSGSNFLGMTNTVGLTAAAA
ASSSNGGADEFSDFQGATGDKSGGITNGRPASAAIGITNPKWRDVSSLVD
LGGLSSNTDKKVAQQKQEEQTFQSNNNSFAGLDGFHSKPQGMGAVRPPAA
TVSTGLSGGVLSGGAMAGGVSGFQQQQQQHQAMQGGWMGAQYGMGIPSGQ
VPQQQQQQQFFGGQGMGIGMGMGMSMGMQQGGGSMMGNKRGLQAGGATAG
AGGTVMPGGL
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mRNA from alignment at H-elongata_contig81926:569..2619+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81926.15860.1 ID=mRNA_H-elongata_contig81926.15860.1|Name=mRNA_H-elongata_contig81926.15860.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2051bp|location=Sequence derived from alignment at H-elongata_contig81926:569..2619+ (Himanthalia elongata Himel1 dioecious)
AAAACATCCACACAGTCGAAGCGTGAACGCAAGAAGACCTCCGGCTCCAA
ATTGGCGATCAAGATCAAGGACAAGAACGCCTCGGCATCGGCGAGCTCAT
CCGCTGCAGCCCCCGCCCCCGCGGAAATACCCGCAGCCGCCGCTACTCCG
GCCTCTTTTCCTGACCTCCTCGGCGGCGACCTTCTTACGCCCGCGCCTGC
ACCGGCGGTGGCAGCAGGCGGGCAGCTGGAGAATTTGTTTGCCACTCCTG
CCGTCATCGCGCCGGCCAATGGTGCCGTCGGGGGGGGCGGAGGGATGGAT
AGCTTCGATCCCCGAGGCGGTGGTTCTGCCGTGCCTGCCGTGGGCGTGCC
CGCGCCCACGGCAGCGGCCGGCGGGTTTGGACATGAGTTTGTGGGCTTCG
CTACCGCTCCTGTAGCTTCGGCTGCTCCCGTGGCGGTGAGGGTAAATGTT
TCGGGATGTGTAGAGGTCTTGCATTATCTGCTGTAACGGTGCTGCAAAAA
ATAAATGAAGTTAAAATTCAGTCAGCGCGTCGGGTGTGGTCGAGTTTTTC
TCTCCCAATAGCGTGGGGGGGGGGGCTTCTCAATCTATCTCTTCCCCGAG
TTAATTCCCGCAACGACAGCGGCTCGCTTATTCCGTTCCGAGATCGCACG
GGCCCGGACTAATCCAATAACGTGCCACAACGTGTCCGTCTTAAGTAGAG
CTTTTGCAAGGTCGCGAGCCTCGGACATCCATTTTGGTTCTCATAGGCTC
ACCCCCCCGCCCCTACCATTTTAATTTCTTTTCACCCTTCTCGTAAAACA
GGCGTTTGGTCACGCTGCGGACCCGTTTGCGGCAACGCCCGCGCCCGTCC
TATCTGGTCGCGGGGTCAGCGGCGTGAGTGGCGTGAGTGGCAGCAACTTC
CTAGGGATGACCAATACCGTCGGCCTAACCGCTGCTGCCGCCGCTTCCTC
CTCCAACGGCGGCGCGGACGAGTTCAGTGATTTCCAGGGTGCAACGGGCG
ACAAGAGCGGTGGGATCACGAATGGCCGACCTGCCTCTGCTGCAATCGGC
ATCACCAACCCTAAGTGGCGAGACGTGTCGTCCCTGGTGGACCTGGGAGG
GCTGAGCAGCAATACGGACAAAAAAGTGTGTATGGGGAGGGAGGGAGGGG
ACTATGTATTATTTGTGTATACTTATTTACTCGCAAGATAAATAATTTTT
AAAAAACAAAATAAAATAAAATAAAAACTAGTTCCTATCAGTAGAGATTG
ATTGGGATGAAGACAGGATGGGCAGGAGGAAGAGCGAGGAGATTTAAGGA
TACGGTATCCAATGTCTCTTCTTGCAAATGAGAGAAGAAAAGGATGCGTT
CGTTTTGCACGGTCGTTATCTAATTCGGTTGTTTTTGATGTCATTCTAAT
ACGGTGGAATGTTCGGAAGGTTGGAATGAGTTCAAGGTTTTTAAAATAAT
AATAAAAAGTAATAATTGATCGCGAGGAAAACGCCACCGAGTCGTGTGAA
ATAACGAAAAACATGTCGCATATTTCGGAAGCAGCCGCGTCCTTGTTCTC
GTTCTCCCCCCCCCCCCTCATTTAACATTCCCCTTTTAACCCCACACACG
GCAGGTTGCACAGCAAAAGCAAGAAGAGCAGACGTTTCAGTCGAACAACA
ACTCTTTCGCTGGCCTGGACGGGTTCCATTCAAAGCCTCAGGGAATGGGC
GCGGTTCGTCCCCCCGCTGCAACGGTGTCGACAGGGCTGTCCGGCGGGGT
GCTCTCCGGGGGAGCGATGGCAGGAGGAGTCTCAGGATTCCAACAGCAGC
AGCAGCAGCACCAAGCCATGCAGGGAGGGTGGATGGGTGCTCAGTATGGC
ATGGGTATTCCCAGTGGCCAAGTTCCGCAGCAGCAGCAGCAGCAGCAGTT
CTTCGGTGGTCAGGGTATGGGTATAGGCATGGGCATGGGTATGAGTATGG
GCATGCAGCAAGGAGGAGGCTCCATGATGGGCAACAAGCGGGGCTTGCAG
GCCGGCGGTGCTACGGCGGGCGCAGGAGGGACTGTGATGCCCGGGGGCTT
G
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Coding sequence (CDS) from alignment at H-elongata_contig81926:569..2619+

>mRNA_H-elongata_contig81926.15860.1 ID=mRNA_H-elongata_contig81926.15860.1|Name=mRNA_H-elongata_contig81926.15860.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2460bp|location=Sequence derived from alignment at H-elongata_contig81926:569..2619+ (Himanthalia elongata Himel1 dioecious)
AAAACATCCACACAGTCGAAGCGTGAACGCAAGAAGACCTCCGGCTCCAA
ATTGGCGATCAAGATCAAGGACAAGAACGCCTCGGCATCGGCGAGCTCAT
CCGCTGCAGCCCCCGCCCCCGCGGAAATACCCGCAGCCGCCGCTACTCCG
GCCTCTTTTCCTGACCTCCTCGGCGGCGACCTTCTTACGCCCGCGCCTGC
ACCGGCGGTGGCAGCAGGCGGGCAGCTGGAGAATTTGTTTGCCACTCCTG
CCGTCATCGCGCCGGCCAATGGTGCCGTCGGGGGGGGCGGAGGGATGGAT
AGCTTCGATCCCCGAGGCGGTGGTTCTGCCGTGCCTGCCGTGGGCGTGCC
CGCGCCCACGGCAGCGGCCGGCGGGTTTGGACATGAGTTTGTGGGCTTCG
CTACCGCTCCTGTAGCTTCGGCTGCTCCCGTGGCGGTGAGGGTAAATGTT
TCGGGATGTAAAACATCCACACAGTCGAAGCGTGAACGCAAGAAGACCTC
CGGCTCCAAATTGGCGATCAAGATCAAGGACAAGAACGCCTCGGCATCGG
CGAGCTCATCCGCTGCAGCCCCCGCCCCCGCGGAAATACCCGCAGCCGCC
GCTACTCCGGCCTCTTTTCCTGACCTCCTCGGCGGCGACCTTCTTACGCC
CGCGCCTGCACCGGCGGTGGCAGCAGGCGGGCAGCTGGAGAATTTGTTTG
CCACTCCTGCCGTCATCGCGCCGGCCAATGGTGCCGTCGGGGGGGGCGGA
GGGATGGATAGCTTCGATCCCCGAGGCGGTGGTTCTGCCGTGCCTGCCGT
GGGCGTGCCCGCGCCCACGGCAGCGGCCGGCGGGTTTGGACATGAGTTTG
TGGGCTTCGCTACCGCTCCTGTAGCTTCGGCTGCTCCCGTGGCGGTGAGG
GTAAATGTTTCGGGATGTGCGTTTGGTCACGCTGCGGACCCGTTTGCGGC
AACGCCCGCGCCCGTCCTATCTGGTCGCGGGGTCAGCGGCGTGAGTGGCG
TGAGTGGCAGCAACTTCCTAGGGATGACCAATACCGTCGGCCTAACCGCT
GCTGCCGCCGCTTCCTCCTCCAACGGCGGCGCGGACGAGTTCAGTGATTT
CCAGGGTGCAACGGGCGACAAGAGCGGTGGGATCACGAATGGCCGACCTG
CCTCTGCTGCAATCGGCATCACCAACCCTAAGTGGCGAGACGTGTCGTCC
CTGGTGGACCTGGGAGGGCTGAGCAGCAATACGGACAAAAAAGCGTTTGG
TCACGCTGCGGACCCGTTTGCGGCAACGCCCGCGCCCGTCCTATCTGGTC
GCGGGGTCAGCGGCGTGAGTGGCGTGAGTGGCAGCAACTTCCTAGGGATG
ACCAATACCGTCGGCCTAACCGCTGCTGCCGCCGCTTCCTCCTCCAACGG
CGGCGCGGACGAGTTCAGTGATTTCCAGGGTGCAACGGGCGACAAGAGCG
GTGGGATCACGAATGGCCGACCTGCCTCTGCTGCAATCGGCATCACCAAC
CCTAAGTGGCGAGACGTGTCGTCCCTGGTGGACCTGGGAGGGCTGAGCAG
CAATACGGACAAAAAAGTTGCACAGCAAAAGCAAGAAGAGCAGACGTTTC
AGTCGAACAACAACTCTTTCGCTGGCCTGGACGGGTTCCATTCAAAGCCT
CAGGGAATGGGCGCGGTTCGTCCCCCCGCTGCAACGGTGTCGACAGGGCT
GTCCGGCGGGGTGCTCTCCGGGGGAGCGATGGCAGGAGGAGTCTCAGGAT
TCCAACAGCAGCAGCAGCAGCACCAAGCCATGCAGGGAGGGTGGATGGGT
GCTCAGTATGGCATGGGTATTCCCAGTGGCCAAGTTCCGCAGCAGCAGCA
GCAGCAGCAGTTCTTCGGTGGTCAGGGTATGGGTATAGGCATGGGCATGG
GTATGAGTATGGGCATGCAGCAAGGAGGAGGCTCCATGATGGGCAACAAG
CGGGGCTTGCAGGCCGGCGGTGCTACGGCGGGCGCAGGAGGGACTGTGAT
GCCCGGGGGCTTGGTTGCACAGCAAAAGCAAGAAGAGCAGACGTTTCAGT
CGAACAACAACTCTTTCGCTGGCCTGGACGGGTTCCATTCAAAGCCTCAG
GGAATGGGCGCGGTTCGTCCCCCCGCTGCAACGGTGTCGACAGGGCTGTC
CGGCGGGGTGCTCTCCGGGGGAGCGATGGCAGGAGGAGTCTCAGGATTCC
AACAGCAGCAGCAGCAGCACCAAGCCATGCAGGGAGGGTGGATGGGTGCT
CAGTATGGCATGGGTATTCCCAGTGGCCAAGTTCCGCAGCAGCAGCAGCA
GCAGCAGTTCTTCGGTGGTCAGGGTATGGGTATAGGCATGGGCATGGGTA
TGAGTATGGGCATGCAGCAAGGAGGAGGCTCCATGATGGGCAACAAGCGG
GGCTTGCAGGCCGGCGGTGCTACGGCGGGCGCAGGAGGGACTGTGATGCC
CGGGGGCTTG
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