mRNA_H-elongata_contig81845.15853.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81845.15853.1
Unique NamemRNA_H-elongata_contig81845.15853.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81845.15853.1 vs. uniprot
Match: D8LBF0_ECTSI (ATP synthase gamma chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBF0_ECTSI)

HSP 1 Score: 501 bits (1289), Expect = 6.060e-172
Identity = 269/312 (86.22%), Postives = 289/312 (92.63%), Query Frame = 1
Query:    1 RSRITTVKNTQKITTAMRLVAAAKVRRAQDAVVKTRPFSETLQSIFGALIGQLGKEDVNLPLLNTREVKNVLLVGLSGDRGLCGAFNSYAIKKTEARAKELTGQGYNVEFVTIGKKISQYFARRDDEYTVKRAFDIGQAPDAAQASAIAQELLSDYLSGEVDSVEIIYTRFVSLISSEPSIRTLLPLSIRGIEDETDEIFQLTSEGGKFKVEREEVPDTAPAELPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAAELSKKLSLVYNRARQASVTQELLEIVAGADAAAQG 936
            R RI TV NT+KITTAMRLVAAAKVRRAQDAV++TRPFSETLQSIFGALI QLGKE+++LPLLN REVKNVLLVGLSGDRGLCGA+NSYAIKKTEAR  ELT QGYNVE+VTIGKKISQYF RR D YTVKRAFD GQAP+AA+ASAIAQELLSDYLSGE DSVEI+YT+FVSLI+SEPSIRTLLPLSIRGIEDETDEIFQLT++GGKF V+REE      AE+PQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAA+L+K+LSL YNRARQASVTQELLEIVAGADAA  G
Sbjct:   63 RQRIVTVNNTKKITTAMRLVAAAKVRRAQDAVLRTRPFSETLQSIFGALIAQLGKENLDLPLLNAREVKNVLLVGLSGDRGLCGAYNSYAIKKTEARGNELTAQGYNVEYVTIGKKISQYFKRRSDTYTVKRAFDCGQAPNAAEASAIAQELLSDYLSGEFDSVEIVYTKFVSLIASEPSIRTLLPLSIRGIEDETDEIFQLTTQGGKFTVDREEAEPVENAEIPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAADLAKRLSLQYNRARQASVTQELLEIVAGADAAQSG 374          
BLAST of mRNA_H-elongata_contig81845.15853.1 vs. uniprot
Match: A0A835YMY9_9STRA (ATP synthase gamma chain n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMY9_9STRA)

HSP 1 Score: 445 bits (1144), Expect = 4.180e-150
Identity = 241/308 (78.25%), Postives = 268/308 (87.01%), Query Frame = 1
Query:    1 RSRITTVKNTQKITTAMRLVAAAKVRRAQDAVVKTRPFSETLQSIFGALIGQLGKEDVNLPLLNTREVKNVLLVGLSGDRGLCGAFNSYAIKKTEARAKELTGQGYNVEFVTIGKKISQYFARRDDEYTVKRAFDIGQAPDAAQASAIAQELLSDYLSGEVDSVEIIYTRFVSLISSEPSIRTLLPLSIRGIEDETDEIFQLTSEGGKFKVEREEVPDTAPAELPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAAELSKKLSLVYNRARQASVTQELLEIVAGADA 924
            R RI TVKNT+KIT AMRLVAAAKVRRAQDAV++TRPFSETLQ IFGALI QLGKEDVNLPLL  REV  V++VG+SGDRGLCGA+NSYAIKKTEAR K L  QG  V+ + IGKKI+QYF RR + Y VKR+F+ GQ P AA+A+AIA+ELL+DYLSGE DSVEIIY+RFVSLISSEPSIRTLLPL IRGIE E DEIFQLTS GGKF V REEVP T  AEL QDLIFEQDP+QILN+ILPLYLDGQILR+LQESVA+ELA+RM +M +ASDNA EL+ KLSL YNRARQASVTQELLEIVAGA+A
Sbjct:   59 RGRIATVKNTKKITEAMRLVAAAKVRRAQDAVLRTRPFSETLQGIFGALIEQLGKEDVNLPLLEEREVNKVIVVGISGDRGLCGAYNSYAIKKTEARIKALKAQGLEVDVIPIGKKITQYFRRRSEIYNVKRSFNCGQNPSAAEAAAIAEELLADYLSGETDSVEIIYSRFVSLISSEPSIRTLLPLKIRGIEAEGDEIFQLTSSGGKFSVNREEVPATPAAELGQDLIFEQDPVQILNAILPLYLDGQILRVLQESVASELASRMQAMASASDNAGELASKLSLQYNRARQASVTQELLEIVAGANA 366          
BLAST of mRNA_H-elongata_contig81845.15853.1 vs. uniprot
Match: A0A7S2UYS0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYS0_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 1.150e-129
Identity = 213/311 (68.49%), Postives = 259/311 (83.28%), Query Frame = 1
Query:    1 RSRITTVKNTQKITTAMRLVAAAKVRRAQDAVVKTRPFSETLQSIFGALIGQLGKEDVNLPLLNTREVKNVLLVGLSGDRGLCGAFNSYAIKKTEARAKELTGQGYNVEFVTIGKKISQYFARRDDEYTVKRAFDIGQAPDAAQASAIAQELLSDYLSGEVDSVEIIYTRFVSLISSEPSIRTLLPLSIRGIEDETDEIFQLTSEGGKFKVEREEVPDTAPAELPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAAELSKKLSLVYNRARQASVTQELLEIVAGADAAAQ 933
            R RI TV NT+KIT+AM+LVAAAKVRRAQDAV++TRPFSETLQ IFGALI QLG+E ++LPLL  REV  V+LV LSGDRGLCG++NSYAIK+TE R  EL   G  V  +T+GKKIS YF +RD    V R++++GQ+P  A A+AI++ELL+D+LSGE DSVE+IYTRFVSLI+S P++RT+LPL  RGIE E DEIF++TSEGG+F V+RE V    PAELP+DLIFEQDP+QILN+ILPLYL+GQILR LQESVA+ELAARM +M +A+DNA  LSK L+  YNRARQA+VTQELLEIVAGA AA++
Sbjct:   64 RDRIKTVNNTKKITSAMKLVAAAKVRRAQDAVLQTRPFSETLQKIFGALIKQLGREFLDLPLLQEREVNKVVLVCLSGDRGLCGSYNSYAIKRTEQRMAELKAAGVEVSLITVGKKISSYFNKRDTP--VLRSYEMGQSPTGADATAISEELLADFLSGECDSVELIYTRFVSLIASTPAVRTMLPLKPRGIETEGDEIFEMTSEGGQFSVKREAVEAAEPAELPKDLIFEQDPVQILNAILPLYLNGQILRTLQESVASELAARMQAMQSATDNAKSLSKTLTSEYNRARQAAVTQELLEIVAGATAASE 372          
BLAST of mRNA_H-elongata_contig81845.15853.1 vs. uniprot
Match: A0A7S1CZK0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZK0_CYCTE)

HSP 1 Score: 372 bits (956), Expect = 9.050e-122
Identity = 202/308 (65.58%), Postives = 247/308 (80.19%), Query Frame = 1
Query:    1 RSRITTVKNTQKITTAMRLVAAAKVRRAQDAVVKTRPFSETLQSIFGALIGQLGKEDVNLPLLNTREVKNVLLVGLSGDRGLCGAFNSYAIKKTEARAKELTGQGYNVEFVTIGKKISQYFARRDDEYTVKRAFDIGQAPDAAQASAIAQELLSDYLSGEVDSVEIIYTRFVSLISSEPSIRTLLPLSIRGIEDETDEIFQLTSEGGKFKVEREEVPDTAPAELPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAAELSKKLSLVYNRARQASVTQELLEIVAGADA 924
            R RI +V NT+KIT AM+LVAAAKVRRAQDAV+ TRPFSETLQS+FG LI +LG E+++LPLL  R+VK V LV ++GDRGLCG +NS+ I+K EAR KELT QG  V+ V IGKK   YF RR+  Y ++ A D GQ PDA+QA  I+QELL+ YLSGE D++E++YT+FVSLI+S PS RTL+P S   I  + DE+FQLTS GG F VER+E+    P E P D+IFEQDP++I+N+ILPLYL+GQILR LQESVA+ELAARM SM +ASDNAAEL++KLSL YNRARQA+VTQE+LEIVAGA A
Sbjct:   60 RDRIKSVTNTKKITMAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLISRLGGENIDLPLLTQRDVKKVTLVVITGDRGLCGGYNSFMIRKAEARYKELTDQGIGVDMVLIGKKGVGYFERRN--YPIRLAVDCGQNPDASQALQISQELLNSYLSGETDAIELLYTKFVSLIASTPSTRTLVPFSASEITSQADEVFQLTSSGGDFGVERKELEVAEPQEFPNDMIFEQDPLEIVNAILPLYLNGQILRTLQESVASELAARMQSMQSASDNAAELARKLSLEYNRARQAAVTQEILEIVAGATA 365          
BLAST of mRNA_H-elongata_contig81845.15853.1 vs. uniprot
Match: A0A7S0GKQ1_9STRA (Hypothetical protein n=3 Tax=Sar TaxID=2698737 RepID=A0A7S0GKQ1_9STRA)

HSP 1 Score: 370 bits (951), Expect = 5.480e-121
Identity = 200/308 (64.94%), Postives = 245/308 (79.55%), Query Frame = 1
Query:    1 RSRITTVKNTQKITTAMRLVAAAKVRRAQDAVVKTRPFSETLQSIFGALIGQLGKEDVNLPLLNTREVKNVLLVGLSGDRGLCGAFNSYAIKKTEARAKELTGQGYNVEFVTIGKKISQYFARRDDEYTVKRAFDIGQAPDAAQASAIAQELLSDYLSGEVDSVEIIYTRFVSLISSEPSIRTLLPLSIRGIEDETDEIFQLTSEGGKFKVEREEVPDTAPAELPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAAELSKKLSLVYNRARQASVTQELLEIVAGADA 924
            R RI  VKNTQKIT AM+LVAAAKVRRAQDAVV TRPFSETLQS+FG L+ +LG + ++LPLL  R+VK V LV +SGDRGLCG +NS+ IKKT+AR KEL  QG  VE V +GKK + YF+RR+  Y + + FD GQ P+A QA+AI++E+LS YL+GE D+VE+ YT+FVSLI+S PS RTL+P S   I  E+DEI+QLTS  GKF+VER+++    P E P D+IFEQDPIQI+NSILPLYL+GQ+LR LQESVA+ELAARM +M AA+DNA +LS  LS  YNRARQASVT E+LEIV+GA A
Sbjct:   61 RDRIKIVKNTQKITMAMKLVAAAKVRRAQDAVVATRPFSETLQSVFGGLVQRLGSDTIDLPLLTQRDVKKVTLVIISGDRGLCGGYNSFMIKKTDARFKELVAQGIEVEMVLVGKKANAYFSRRN--YPIVKYFDCGQNPNAKQANAISEEILSTYLAGETDTVELYYTKFVSLIASSPSTRTLIPFSASEISQESDEIYQLTSSEGKFEVERKDLGAAEPQEFPNDMIFEQDPIQIVNSILPLYLNGQLLRCLQESVASELAARMNAMQAAADNAGDLSSALSQEYNRARQASVTAEILEIVSGASA 366          
BLAST of mRNA_H-elongata_contig81845.15853.1 vs. uniprot
Match: B8C0W4_THAPS (ATP synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0W4_THAPS)

HSP 1 Score: 365 bits (936), Expect = 9.250e-119
Identity = 193/308 (62.66%), Postives = 246/308 (79.87%), Query Frame = 1
Query:    1 RSRITTVKNTQKITTAMRLVAAAKVRRAQDAVVKTRPFSETLQSIFGALIGQLGKEDVNLPLLNTREVKNVLLVGLSGDRGLCGAFNSYAIKKTEARAKELTGQGYNVEFVTIGKKISQYFARRDDEYTVKRAFDIGQAPDAAQASAIAQELLSDYLSGEVDSVEIIYTRFVSLISSEPSIRTLLPLSIRGIEDETDEIFQLTSEGGKFKVEREEVPDTAPAELPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAAELSKKLSLVYNRARQASVTQELLEIVAGADA 924
            R RIT+V NT+KIT+AM+LVAAAKVRRAQD+V+ TRPFSETLQS+FG LI +LG E  +LPLL  REV  V +  ++GDRGLCG +NS+ IKK EAR KELT QG   +F+ IGKK + YFARR  EY +++ FD GQ P++ +A AI++E+++ +LSGE D+VE++YT+FVSLI+S PS+RTL+P S   I  + DE+FQLTS+ G F VER+E+    P + P D+IFEQDP+QI+NSILPLYL+GQILR LQESVA+ELAARM SM +ASDNA  L+K+LS  YNRARQA+VTQE+LEIV+GA A
Sbjct:   60 RDRITSVNNTKKITSAMKLVAAAKVRRAQDSVLATRPFSETLQSVFGGLINRLGGEAADLPLLTQREVNKVTITVITGDRGLCGGYNSFMIKKAEARYKELTAQGIECDFILIGKKGASYFARR--EYPIRKVFDCGQNPNSKEALAISEEIINSFLSGETDAVELLYTKFVSLIASSPSVRTLVPFSASEISQKGDEVFQLTSQDGDFGVERKELEVAEPQDFPNDMIFEQDPLQIVNSILPLYLNGQILRTLQESVASELAARMQSMQSASDNAKALAKRLSQEYNRARQAAVTQEILEIVSGATA 365          
BLAST of mRNA_H-elongata_contig81845.15853.1 vs. uniprot
Match: ATPG_TRICV (ATP synthase gamma chain, chloroplastic n=1 Tax=Trieres chinensis TaxID=1514140 RepID=ATPG_TRICV)

HSP 1 Score: 363 bits (933), Expect = 2.890e-118
Identity = 197/308 (63.96%), Postives = 242/308 (78.57%), Query Frame = 1
Query:    1 RSRITTVKNTQKITTAMRLVAAAKVRRAQDAVVKTRPFSETLQSIFGALIGQLGKEDVNLPLLNTREVKNVLLVGLSGDRGLCGAFNSYAIKKTEARAKELTGQGYNVEFVTIGKKISQYFARRDDEYTVKRAFDIGQAPDAAQASAIAQELLSDYLSGEVDSVEIIYTRFVSLISSEPSIRTLLPLSIRGIEDETDEIFQLTSEGGKFKVEREEVPDTAPAELPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAAELSKKLSLVYNRARQASVTQELLEIVAGADA 924
            R RIT+VKNT+KIT AM+LVAAAKVRRAQDAV+ TRPFSETLQS+FG LI ++G E ++LPLL  REV  V LV ++GDRGLCG +NS+ IKK EAR  EL  QG   + V IGKK   YF RR   Y +++ F+ GQ PD+ QA AI++ELL+ YLSGE D+VE++YT+F+SLI+S PS RTL+P S   I  + DE+FQLTS GG F+VER E+    P + P D+IFEQDPIQI+NSILPLYL+GQILR LQESVA+ELAARM SM +ASDNA +L+K+LS  YNRARQA+VTQE+LEIV+GA A
Sbjct:   63 RDRITSVKNTKKITMAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIARMGGEALDLPLLTQREVSKVTLVVITGDRGLCGGYNSFMIKKAEARFNELKDQGVACDMVLIGKKGITYFQRRG--YPIRKTFETGQNPDSKQALAISEELLNTYLSGESDAVELLYTKFISLIASSPSARTLIPFSASEITQQGDEVFQLTSSGGDFEVERTELEVAEPQDFPNDMIFEQDPIQIINSILPLYLNGQILRTLQESVASELAARMQSMQSASDNAGDLAKRLSTEYNRARQAAVTQEILEIVSGASA 368          
BLAST of mRNA_H-elongata_contig81845.15853.1 vs. uniprot
Match: A0A5J4Z1R1_PORPP (ATP synthase gamma chain, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1R1_PORPP)

HSP 1 Score: 363 bits (931), Expect = 3.490e-118
Identity = 198/306 (64.71%), Postives = 239/306 (78.10%), Query Frame = 1
Query:    1 RSRITTVKNTQKITTAMRLVAAAKVRRAQDAVVKTRPFSETLQSIFGALIGQLGKEDVNLPLLNTREVKNVLLVGLSGDRGLCGAFNSYAIKKTEARAKELTGQGYNVEFVTIGKKISQYFARRDDEYTVKRAFDIGQAPDAAQASAIAQELLSDYLSGEVDSVEIIYTRFVSLISSEPSIRTLLPLSIRGIEDETDEIFQLTSEGGKFKVEREEVPDTAPAELPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAAELSKKLSLVYNRARQASVTQELLEIVAGA 918
            R RI +VKNTQKITTAM+LVAAAKVRRAQDAV++TRPFSETLQ + G L+ +L  E +++PLL  RE KNV+LV  SGDRGLCG +NS AIK++E R KEL   G NVE +TIG K SQYF RR  +YTV+RAF IGQAP A QA+ I  E+LS+YLSGEVD VE++YTRFVSLISS PS+RTLLPLS  GIE   DEIF LTS+ G+F V     P       P  +IFEQDP Q+LN+ILPLYL+GQ+LR LQESVA+ELA+RM++M  A+DNA +LSK L++VYNRARQA +TQE+ EI AG+
Sbjct:   50 RDRIGSVKNTQKITTAMKLVAAAKVRRAQDAVLRTRPFSETLQKVLGGLLKRLENEFLDVPLLEEREAKNVVLVVTSGDRGLCGGYNSNAIKQSERRVKELLATGVNVELITIGNKASQYFGRRP-QYTVRRAFPIGQAPTAEQATEITDEILSEYLSGEVDRVELLYTRFVSLISSTPSVRTLLPLSPTGIETNGDEIFALTSKDGQFSVNSSIAPVAEAEVFPSQMIFEQDPQQLLNAILPLYLNGQVLRALQESVASELASRMSAMSNATDNAKQLSKDLTIVYNRARQAKITQEISEICAGS 354          
BLAST of mRNA_H-elongata_contig81845.15853.1 vs. uniprot
Match: A0A1E7FDS7_9STRA (Chloroplast ATPase gamma subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDS7_9STRA)

HSP 1 Score: 360 bits (925), Expect = 4.460e-117
Identity = 197/308 (63.96%), Postives = 242/308 (78.57%), Query Frame = 1
Query:    1 RSRITTVKNTQKITTAMRLVAAAKVRRAQDAVVKTRPFSETLQSIFGALIGQLGKEDVNLPLLNTREVKNVLLVGLSGDRGLCGAFNSYAIKKTEARAKELTGQGYNVEFVTIGKKISQYFARRDDEYTVKRAFDIGQAPDAAQASAIAQELLSDYLSGEVDSVEIIYTRFVSLISSEPSIRTLLPLSIRGIEDETDEIFQLTSEGGKFKVEREEVPDTAPAELPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAAELSKKLSLVYNRARQASVTQELLEIVAGADA 924
            R RI++VKNT+KIT AM+LVAAAKVRRAQDAV+ TRPFSETLQS+FG LI +LG E ++LPLL  REVK V L  ++GDRGLCG +NS+ IKK EAR KELT QG  V+ V IG K   YF RR  ++ ++  F+ GQ P+A  A AI++ELL+ +LSGE D++E++YT+FVSLI+S P++RTL+P S   I    DE+FQLTSE G+F VER E+    P E P D+IFEQDP+QI+NSILPLYL+GQ+LR LQESVA+ELAARM SM +ASDNA  L K+LSL YNRARQA+VTQELLEIVAGA A
Sbjct:   62 RDRISSVKNTKKITMAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIARLGGEAMDLPLLTQREVKKVTLTVVTGDRGLCGGYNSFMIKKAEARYKELTAQGIEVDMVLIGVKGIAYFERR--KFPIRAKFECGQNPNAKDALAISEELLNTFLSGETDAIELLYTKFVSLIASVPAVRTLVPFSASDITQTGDEVFQLTSESGEFSVERTELAVAEPQEFPNDMIFEQDPLQIVNSILPLYLNGQVLRTLQESVASELAARMQSMQSASDNAGALEKELSLQYNRARQAAVTQELLEIVAGAMA 367          
BLAST of mRNA_H-elongata_contig81845.15853.1 vs. uniprot
Match: A0A7S3V5U7_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5U7_9STRA)

HSP 1 Score: 360 bits (924), Expect = 5.900e-117
Identity = 194/308 (62.99%), Postives = 241/308 (78.25%), Query Frame = 1
Query:    1 RSRITTVKNTQKITTAMRLVAAAKVRRAQDAVVKTRPFSETLQSIFGALIGQLGKEDVNLPLLNTREVKNVLLVGLSGDRGLCGAFNSYAIKKTEARAKELTGQGYNVEFVTIGKKISQYFARRDDEYTVKRAFDIGQAPDAAQASAIAQELLSDYLSGEVDSVEIIYTRFVSLISSEPSIRTLLPLSIRGIEDETDEIFQLTSEGGKFKVEREEVPDTAPAELPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARMASMGAASDNAAELSKKLSLVYNRARQASVTQELLEIVAGADA 924
            R RI+TVKNT+KIT AM+LVAAAKVRRAQDAV+ TRPFSETLQS+FG L+ ++G +  ++PLL  REVK V +  ++GDRGLCG +NS+ IKK EAR +EL   G +V+ V IGKK   YF  RD  Y ++  F+ GQ P++ +A AI++ELL+ YLSGE D++E++YT+FVSLI+S PS+RTL+P S   I ++ DE+FQLTS  G F+VER E+   AP E P D+IFEQDP QI+NSILPLYL+GQILR +QESVAAELAARMASM AASDNA  L K LS+ YNRARQASVT E+LEIVAGA A
Sbjct:   60 RDRISTVKNTKKITMAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLVERMGGDTADIPLLTQREVKKVTICCITGDRGLCGGYNSFMIKKAEARFQELKAAGLDVDMVLIGKKGISYFTNRD--YPIRAQFECGQNPNSKEALAISEELLNTYLSGETDTIELLYTKFVSLIASVPSVRTLVPFSASEITNKGDEVFQLTSSSGDFEVERTELDAAAPQEFPNDMIFEQDPTQIVNSILPLYLNGQILRTMQESVAAELAARMASMQAASDNAGALEKDLSMQYNRARQASVTAEILEIVAGASA 365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81845.15853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBF0_ECTSI6.060e-17286.22ATP synthase gamma chain n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YMY9_9STRA4.180e-15078.25ATP synthase gamma chain n=2 Tax=Tribonema minus T... [more]
A0A7S2UYS0_9STRA1.150e-12968.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1CZK0_CYCTE9.050e-12265.58Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S0GKQ1_9STRA5.480e-12164.94Hypothetical protein n=3 Tax=Sar TaxID=2698737 Rep... [more]
B8C0W4_THAPS9.250e-11962.66ATP synthase n=1 Tax=Thalassiosira pseudonana TaxI... [more]
ATPG_TRICV2.890e-11863.96ATP synthase gamma chain, chloroplastic n=1 Tax=Tr... [more]
A0A5J4Z1R1_PORPP3.490e-11864.71ATP synthase gamma chain, chloroplastic n=1 Tax=Po... [more]
A0A1E7FDS7_9STRA4.460e-11763.96Chloroplast ATPase gamma subunit n=1 Tax=Fragilari... [more]
A0A7S3V5U7_9STRA5.900e-11762.99Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81845contigH-elongata_contig81845:732..2450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score483.0
Seed ortholog evalue9.9e-134
Seed eggNOG ortholog2880.D8LBF0
Preferred nameATPC
KEGG koko:K02115,ko:K08341
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04068,ko04136,ko04137,ko04138,ko04139,ko04140,ko04212,ko04371,ko04621,ko04727,ko05167,map00190,map00195,map01100,map04068,map04136,map04137,map04138,map04139,map04140,map04212,map04371,map04621,map04727,map05167
KEGG ModuleM00157
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009544,GO:0009579,GO:0009767,GO:0009772,GO:0009941,GO:0009987,GO:0015672,GO:0015979,GO:0015985,GO:0015986,GO:0016020,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019684,GO:0019693,GO:0022603,GO:0022900,GO:0030234,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046034,GO:0046390,GO:0046483,GO:0050789,GO:0050790,GO:0050793,GO:0051179,GO:0051234,GO:0051239,GO:0055035,GO:0055085,GO:0055086,GO:0055114,GO:0065007,GO:0065009,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098772,GO:0098796,GO:0098807,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1905421,GO:2000026,GO:2000067,GO:2000280
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0224@1,KOG1531@2759
COG Functional cat.C
BiGG ReactioniRC1080.CRv4_Au5_s6_g12596_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko03029,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATP synthase gamma chain
Ec32 orthologEc-27_004200.1
Exons1
Model size1719
Cds size897
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81845.15853.1prot_H-elongata_contig81845.15853.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81845 780..1676 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931226.4373562-UTR-H-elongata_contig81845:731..7791622931226.4373562-UTR-H-elongata_contig81845:731..779Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81845 732..779 +
1691679749.8260052-UTR-H-elongata_contig81845:731..7791691679749.8260052-UTR-H-elongata_contig81845:731..779Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81845 732..779 +
1622931226.4704323-UTR-H-elongata_contig81845:1676..24501622931226.4704323-UTR-H-elongata_contig81845:1676..2450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81845 1677..2450 +
1691679749.8482757-UTR-H-elongata_contig81845:1676..24501691679749.8482757-UTR-H-elongata_contig81845:1676..2450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81845 1677..2450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931226.4534502-CDS-H-elongata_contig81845:779..16761622931226.4534502-CDS-H-elongata_contig81845:779..1676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81845 780..1676 +
1691679749.8380728-CDS-H-elongata_contig81845:779..16761691679749.8380728-CDS-H-elongata_contig81845:779..1676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81845 780..1676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81845.15853.1

>prot_H-elongata_contig81845.15853.1 ID=prot_H-elongata_contig81845.15853.1|Name=mRNA_H-elongata_contig81845.15853.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=299bp
MRLVAAAKVRRAQDAVVKTRPFSETLQSIFGALIGQLGKEDVNLPLLNTR
EVKNVLLVGLSGDRGLCGAFNSYAIKKTEARAKELTGQGYNVEFVTIGKK
ISQYFARRDDEYTVKRAFDIGQAPDAAQASAIAQELLSDYLSGEVDSVEI
IYTRFVSLISSEPSIRTLLPLSIRGIEDETDEIFQLTSEGGKFKVEREEV
PDTAPAELPQDLIFEQDPIQILNSILPLYLDGQILRMLQESVAAELAARM
ASMGAASDNAAELSKKLSLVYNRARQASVTQELLEIVAGADAAAQGGN*
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mRNA from alignment at H-elongata_contig81845:732..2450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81845.15853.1 ID=mRNA_H-elongata_contig81845.15853.1|Name=mRNA_H-elongata_contig81845.15853.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1719bp|location=Sequence derived from alignment at H-elongata_contig81845:732..2450+ (Himanthalia elongata Himel1 dioecious)
AGGTCACGTATCACGACCGTCAAGAACACGCAGAAGATCACGACGGCAAT GCGACTCGTGGCTGCCGCGAAGGTGCGCCGAGCTCAAGATGCCGTAGTGA AGACTCGTCCTTTCTCCGAGACTCTGCAGAGCATCTTTGGTGCACTCATC GGTCAGCTTGGTAAAGAGGACGTGAATCTCCCTCTGCTGAACACAAGGGA GGTAAAAAACGTGCTCTTGGTGGGTCTGTCGGGCGACCGTGGCTTGTGCG GAGCGTTTAATTCGTACGCCATCAAGAAGACGGAGGCGAGGGCCAAGGAG CTCACGGGTCAGGGTTACAACGTGGAGTTCGTGACCATCGGGAAAAAAAT ATCGCAATACTTCGCGCGTAGAGACGACGAGTACACGGTCAAGCGAGCGT TTGATATCGGGCAGGCGCCCGACGCAGCCCAGGCGTCGGCGATTGCGCAG GAGCTTCTCTCGGACTACCTCTCGGGCGAGGTGGACAGCGTGGAGATAAT CTACACGAGGTTTGTGTCCCTCATCTCATCCGAACCCTCCATCCGCACCC TGCTGCCCCTGTCCATCCGCGGCATCGAAGACGAGACGGACGAGATATTT CAGCTCACTAGCGAGGGGGGGAAGTTCAAGGTAGAAAGGGAAGAGGTGCC GGACACTGCACCCGCTGAGCTCCCACAAGACCTCATCTTCGAGCAGGATC CTATTCAGATACTCAATTCTATCCTTCCTCTGTACCTCGACGGGCAGATC TTGCGCATGTTGCAAGAGTCGGTCGCGGCCGAACTGGCCGCACGAATGGC TTCGATGGGTGCCGCCTCCGATAACGCCGCAGAACTCTCTAAGAAGCTTT CCCTCGTCTACAACCGCGCTCGTCAAGCGAGCGTTACCCAGGAACTCCTG GAAATTGTTGCTGGAGCAGATGCGGCTGCCCAGGGCGGCAATTAGTCAAG AAAACTAGCCACTTGTGGAGACTAGGAACGGCGTAGGGTGCAGAAGATCG TGTGTCTTCGCCGAGCTGCACGGGTAAAGAAGCCAGAAAGTTGTTACAGA GGGTAAAGAAGCCAGCAACGACTCCTCTCACGCCAAGAAAGCGCTAGAGT GCGCCTTTAGGTGGGCACGTACTACCAATTTTTGGTATCATAGATCCCAA ACTGCGGGTGCCTACCGCTGGGCCGTGAGGCATCTCCATACAACAGAGAT AGGATGAAACTCTCAAATGGAGGTGGTAAATATATTTTGCAGTTTTTAGA CATTGCTTTAGCGGTACTTATTTTTTTCTCGAGTAGTGAAGATGTCGGTG CTCTCTATCAATCTCTCTCTTCTCGTTTAAATCGAACGGTAACGGCAACG GTATAACGGCGACCGCAATAGCAGTTTGCTTCTCGCCGCTTCGGCCCGGG CCAGCTAGATAAGACATAAGACATTGTAGCGGCATTGGACGAATAATCCT GACGGAAATTCTCGGTCTGTGACACATTAACAATCAGGCTGGTACCCCTC TACTCGTCCAATAGCATGGGCATTCCATCGCTCTATTCTCCGTTCGCCCC CTCCACTTGACAGGCGTCCAGTTGTCAGCGCTGCGTCTATCGGTATTATA GGAGTAATATCTTTTGAGATTCGGTTGCAGGCGTCGCTATGCAACTGGGG AGATTTTCTCCACCAACTTTCGCAAATTCGTGAGCTCCACCTTCGTCTCT ATCAATTCTTTCTCAACCC
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Coding sequence (CDS) from alignment at H-elongata_contig81845:732..2450+

>mRNA_H-elongata_contig81845.15853.1 ID=mRNA_H-elongata_contig81845.15853.1|Name=mRNA_H-elongata_contig81845.15853.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1794bp|location=Sequence derived from alignment at H-elongata_contig81845:732..2450+ (Himanthalia elongata Himel1 dioecious)
ATGCGACTCGTGGCTGCCGCGAAGGTGCGCCGAGCTCAAGATGCCGTAGT
GAAGACTCGTCCTTTCTCCGAGACTCTGCAGAGCATCTTTGGTGCACTCA
TCGGTCAGCTTGGTAAAGAGGACGTGAATCTCCCTCTGCTGAACACAAGG
GAGGTAAAAAACGTGCTCTTGGTGGGTCTGTCGGGCGACCGTGGCTTGTG
CGGAGCGTTTAATTCGTACGCCATCAAGAAGACGGAGGCGAGGGCCAAGG
AGCTCACGGGTCAGGGTTACAACGTGGAGTTCGTGACCATCGGGAAAAAA
ATATCGCAATACTTCGCGCGTAGAGACGACGAGTACACGGTCAAGCGAGC
GTTTGATATCGGGCAGGCGCCCGACGCAGCCCAGGCGTCGGCGATTGCGC
AGGAGCTTCTCTCGGACTACCTCTCGGGCGAGGTGGACAGCGTGGAGATA
ATCTACACGAGGTTTGTGTCCCTCATCTCATCCGAACCCTCCATCCGCAC
CCTGCTGCCCCTGTCCATCCGCGGCATCGAAGACGAGACGGACGAGATAT
TTCAGCTCACTAGCGAGGGGGGGAAGTTCAAGGTAGAAAGGGAAGAGGTG
CCGGACACTGCACCCGCTGAGCTCCCACAAGACCTCATCTTCGAGCAGGA
TCCTATTCAGATACTCAATTCTATCCTTCCTCTGTACCTCGACGGGCAGA
TCTTGCGCATGTTGCAAGAGTCGGTCGCGGCCGAACTGGCCGCACGAATG
GCTTCGATGGGTGCCGCCTCCGATAACGCCGCAGAACTCTCTAAGAAGCT
TTCCCTCGTCTACAACCGCGCTCGTCAAGCGAGCGTTACCCAGGAACTCC
TGGAAATTGTTGCTGGAGCAGATGCGGCTGCCCAGGGCGGCAATTAGATG
CGACTCGTGGCTGCCGCGAAGGTGCGCCGAGCTCAAGATGCCGTAGTGAA
GACTCGTCCTTTCTCCGAGACTCTGCAGAGCATCTTTGGTGCACTCATCG
GTCAGCTTGGTAAAGAGGACGTGAATCTCCCTCTGCTGAACACAAGGGAG
GTAAAAAACGTGCTCTTGGTGGGTCTGTCGGGCGACCGTGGCTTGTGCGG
AGCGTTTAATTCGTACGCCATCAAGAAGACGGAGGCGAGGGCCAAGGAGC
TCACGGGTCAGGGTTACAACGTGGAGTTCGTGACCATCGGGAAAAAAATA
TCGCAATACTTCGCGCGTAGAGACGACGAGTACACGGTCAAGCGAGCGTT
TGATATCGGGCAGGCGCCCGACGCAGCCCAGGCGTCGGCGATTGCGCAGG
AGCTTCTCTCGGACTACCTCTCGGGCGAGGTGGACAGCGTGGAGATAATC
TACACGAGGTTTGTGTCCCTCATCTCATCCGAACCCTCCATCCGCACCCT
GCTGCCCCTGTCCATCCGCGGCATCGAAGACGAGACGGACGAGATATTTC
AGCTCACTAGCGAGGGGGGGAAGTTCAAGGTAGAAAGGGAAGAGGTGCCG
GACACTGCACCCGCTGAGCTCCCACAAGACCTCATCTTCGAGCAGGATCC
TATTCAGATACTCAATTCTATCCTTCCTCTGTACCTCGACGGGCAGATCT
TGCGCATGTTGCAAGAGTCGGTCGCGGCCGAACTGGCCGCACGAATGGCT
TCGATGGGTGCCGCCTCCGATAACGCCGCAGAACTCTCTAAGAAGCTTTC
CCTCGTCTACAACCGCGCTCGTCAAGCGAGCGTTACCCAGGAACTCCTGG
AAATTGTTGCTGGAGCAGATGCGGCTGCCCAGGGCGGCAATTAG
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