mRNA_H-elongata_contig81775.15843.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81775.15843.1
Unique NamemRNA_H-elongata_contig81775.15843.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81775.15843.1 vs. uniprot
Match: D7FNI3_ECTSI (Clathrin assembly complex, medium subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI3_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 9.150e-57
Identity = 91/105 (86.67%), Postives = 95/105 (90.48%), Query Frame = 1
Query:    1 PCWQTPKHSLIHVYRDDVFLLATCTEDVNALGVIEFLHRVIEIMGDYFGGNVDEGAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIEPPTTFARFVNATTGK 315
            P  QT KH+LIHVYRDDVFLLATCTEDV+ LGVIEFLHRV++IMGDYFGGNVDE AIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMI PPTTF R V A TGK
Sbjct:   47 PILQTSKHNLIHVYRDDVFLLATCTEDVSTLGVIEFLHRVLDIMGDYFGGNVDESAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIRPPTTFVRMVTAATGK 151          
BLAST of mRNA_H-elongata_contig81775.15843.1 vs. uniprot
Match: A0A662XRX9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRX9_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.920e-34
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 PCWQTPKHSLIHVYRDDVFLLATCTEDVNALGVIEFLHRVIEIMGDYFGGNVDEGAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIEPPTTFARFVNATTGKVR 321
            P   T K+ L+ V+RDD+F+LA  T +++ L VIEFLHRV+ +  DYFG N DE ++K++FS VYQLLEEM+DNG+PLTTEPNALKAM+ PP+T  R     +GK R
Sbjct:   54 PIITTSKYYLVSVFRDDLFVLAVVTNEISPLFVIEFLHRVLAVFRDYFG-NFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTANRIAAMVSGKSR 159          
BLAST of mRNA_H-elongata_contig81775.15843.1 vs. uniprot
Match: A0A7S2G8T1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8T1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.060e-33
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 PCWQTPKHSLIHVYRDDVFLLATCTEDVNALGVIEFLHRVIEIMGDYFGGNVDEGAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIEPPTTFARFVNATTGK 315
            P   T K+ LI V+RDDVFL+A+ T +V  L VIEFLHR+I+I  +YFG +V+E  IK++FS  YQLLEEMMDNG+PLTTEPNALKAMI+PP+   R  +  TGK
Sbjct:   60 PIIYTSKYYLISVFRDDVFLIASVTAEVPPLLVIEFLHRIIDIYTEYFG-SVEEQNIKDNFSTCYQLLEEMMDNGYPLTTEPNALKAMIKPPSVMGRVHSYATGK 163          
BLAST of mRNA_H-elongata_contig81775.15843.1 vs. uniprot
Match: A0A2D4CF09_PYTIN (p-3 complex subunit mu, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF09_PYTIN)

HSP 1 Score: 123 bits (309), Expect = 1.670e-33
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 PCWQTPKHSLIHVYRDDVFLLATCTEDVNALGVIEFLHRVIEIMGDYFGGNVDEGAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIEPPTTFARFVNATTGKVR 321
            P   T K+ L+ V+RDD+FLLA  T ++  L VIEFLHRV+ +  DYFG   DE ++K++FS VYQLLEEM+DNG+PLTTEPNA+KAM+ PP+T  R     +GK R
Sbjct:   47 PIIVTSKYYLVSVFRDDLFLLAVVTNEIAPLFVIEFLHRVLAVFRDYFG-TFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNAMKAMVAPPSTANRIAAMVSGKSR 152          
BLAST of mRNA_H-elongata_contig81775.15843.1 vs. uniprot
Match: F0YHF4_AURAN (MHD domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHF4_AURAN)

HSP 1 Score: 124 bits (312), Expect = 4.610e-33
Identity = 59/105 (56.19%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    1 PCWQTPKHSLIHVYRDDVFLLATCTEDVNALGVIEFLHRVIEIMGDYFGGNVDEGAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIEPPTTFARFVNATTGK 315
            P    PKH L+ ++R+DV+++AT  +DV  L VIEFLHR+I+I  +YFG   DEG+IK++FS+VYQLLEEM+DNG+PL TEPNALKAMI+P +   R     TG+
Sbjct:   47 PILYRPKHYLVSIFREDVYVIATLAKDVAPLLVIEFLHRIIDIFVEYFGA-ADEGSIKDNFSVVYQLLEEMLDNGNPLMTEPNALKAMIKPQSVMGRLQAVATGR 150          
BLAST of mRNA_H-elongata_contig81775.15843.1 vs. uniprot
Match: H3G7T8_PHYRM (MHD domain-containing protein n=28 Tax=Peronosporaceae TaxID=4777 RepID=H3G7T8_PHYRM)

HSP 1 Score: 127 bits (319), Expect = 1.040e-32
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 PCWQTPKHSLIHVYRDDVFLLATCTEDVNALGVIEFLHRVIEIMGDYFGGNVDEGAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIEPPTTFARFVNATTGKVR 321
            P   T K+ L+ V+RDD+F+LA  T +V+ L VIEFLHRV+ +  DYFG N DE ++K++FS VYQLLEEM+DNG+PLTTEPNALKAM+ PP+T  R     +GK R
Sbjct:   35 PIITTSKYYLVSVFRDDLFVLAVVTNEVSPLFVIEFLHRVLAVFRDYFG-NFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTANRIAAMVSGKSR 140          
BLAST of mRNA_H-elongata_contig81775.15843.1 vs. uniprot
Match: F0YKX1_AURAN (MHD domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKX1_AURAN)

HSP 1 Score: 127 bits (319), Expect = 1.290e-32
Identity = 61/105 (58.10%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 PCWQTPKHSLIHVYRDDVFLLATCTEDVNALGVIEFLHRVIEIMGDYFGGNVDEGAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIEPPTTFARFVNATTGK 315
            P   T K+ L+ V RDD++++AT  +DV  L VIEFLHRV++I  +YFG   DEG+IK++FS+VYQLLEEM+DNG+PLTTEPNALKAMI+PP+   R     TG+
Sbjct:   47 PILHTSKYYLVSVSRDDIYVIATLAKDVAPLLVIEFLHRVVDIFVEYFGA-ADEGSIKDNFSMVYQLLEEMLDNGNPLTTEPNALKAMIKPPSVMGRLQAVATGR 150          
BLAST of mRNA_H-elongata_contig81775.15843.1 vs. uniprot
Match: A0A835YUG2_9STRA (Mu homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.340e-32
Identity = 65/105 (61.90%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 PCWQTPKHSLIHVYRDDVFLLATCTEDVNALGVIEFLHRVIEIMGDYFGGNVDEGAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIEPPTTFARFVNATTGK 315
            P     K  +I VYR D+FL+A   ++   L  IEFLHRV++I+ DY G  VDE +IKESFSLVYQLLEEMMDNGHP+TTEPNALKAMI+PPT   R V A TG+
Sbjct:   47 PIMAVNKGFIISVYRYDMFLIAKVQQETPPLLCIEFLHRVLDILADYLGA-VDETSIKESFSLVYQLLEEMMDNGHPMTTEPNALKAMIKPPTVMGRVVAAATGR 150          
BLAST of mRNA_H-elongata_contig81775.15843.1 vs. uniprot
Match: W4FFE6_9STRA (MHD domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FFE6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.410e-32
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 PCWQTPKHSLIHVYRDDVFLLATCTEDVNALGVIEFLHRVIEIMGDYFGGNVDEGAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIEPPTTFARFVNATTGKVR 321
            P   T KH  I V+R+ +FLLA  T +++ L VIEFLHRV+ +  DYFG + +E AIK++FS VYQLLEEM+DNG+PLTTEPNALKAM+ PP+T  R     +GK R
Sbjct:   47 PVIATSKHYFISVFREGLFLLAVVTNEISPLFVIEFLHRVVAVFRDYFG-SFEESAIKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTVNRIAAIVSGKSR 152          
BLAST of mRNA_H-elongata_contig81775.15843.1 vs. uniprot
Match: A0A7S2GKZ3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GKZ3_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.840e-32
Identity = 63/99 (63.64%), Postives = 77/99 (77.78%), Query Frame = 1
Query:   19 KHSLIHVYRDDVFLLATCTEDVNALGVIEFLHRVIEIMGDYFGGNVDEGAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIEPPTTFARFVNATTGK 315
            K+ LI VYRDD+F++A+   +V  L VIEFLHR+I I  +YFG +V+E AIKE+FS  YQLLEEMMDNG+PLTTEPNALKAMI+PP+   R   A TGK
Sbjct:   53 KYYLISVYRDDLFIIASVVAEVAPLLVIEFLHRIITIFTEYFG-SVEETAIKENFSTCYQLLEEMMDNGYPLTTEPNALKAMIKPPSVMGRLTAAATGK 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81775.15843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNI3_ECTSI9.150e-5786.67Clathrin assembly complex, medium subunit n=1 Tax=... [more]
A0A662XRX9_9STRA1.920e-3457.01Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A7S2G8T1_9STRA1.060e-3360.95Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A2D4CF09_PYTIN1.670e-3356.07p-3 complex subunit mu, putative (Fragment) n=1 Ta... [more]
F0YHF4_AURAN4.610e-3356.19MHD domain-containing protein n=1 Tax=Aureococcus ... [more]
H3G7T8_PHYRM1.040e-3257.94MHD domain-containing protein n=28 Tax=Peronospora... [more]
F0YKX1_AURAN1.290e-3258.10MHD domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A835YUG2_9STRA1.340e-3261.90Mu homology domain-containing protein n=1 Tax=Trib... [more]
W4FFE6_9STRA3.410e-3257.01MHD domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S2GKZ3_9STRA4.840e-3263.64Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81775contigH-elongata_contig81775:1981..2660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue1.4e-46
Seed eggNOG ortholog2880.D7FNI3
Preferred nameAP3M2
KEGG koko:K12398,ko:K17969
KEGG Pathwayko04137,ko04139,ko04142,map04137,map04139,map04142
GOsGO:0000323,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005773,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006897,GO:0006907,GO:0006928,GO:0006950,GO:0006996,GO:0007017,GO:0007018,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007568,GO:0008055,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0008565,GO:0009058,GO:0009267,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010876,GO:0010970,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017137,GO:0018130,GO:0019438,GO:0019538,GO:0019748,GO:0019899,GO:0019915,GO:0030117,GO:0030119,GO:0030123,GO:0030705,GO:0031201,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0033060,GO:0033365,GO:0033554,GO:0034613,GO:0042440,GO:0042441,GO:0042594,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044550,GO:0045184,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046903,GO:0046907,GO:0047496,GO:0048066,GO:0048069,GO:0048475,GO:0048489,GO:0048490,GO:0048856,GO:0050896,GO:0051020,GO:0051179,GO:0051234,GO:0051235,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0061462,GO:0065007,GO:0065008,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0097479,GO:0097480,GO:0097708,GO:0098657,GO:0098796,GO:0098930,GO:0099003,GO:0099111,GO:0099514,GO:0099517,GO:0099518,GO:1901360,GO:1901362,GO:1901564,GO:1901576
EggNOG free text desc.anterograde synaptic vesicle transport
EggNOG OGsKOG2740@1,KOG2740@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931225.4127557-CDS-H-elongata_contig81775:1980..20761622931225.4127557-CDS-H-elongata_contig81775:1980..2076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81775 1981..2076 +
1691679749.4723198-CDS-H-elongata_contig81775:1980..20761691679749.4723198-CDS-H-elongata_contig81775:1980..2076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81775 1981..2076 +
1622931225.4404655-CDS-H-elongata_contig81775:2405..26601622931225.4404655-CDS-H-elongata_contig81775:2405..2660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81775 2406..2660 +
1691679749.486469-CDS-H-elongata_contig81775:2405..26601691679749.486469-CDS-H-elongata_contig81775:2405..2660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81775 2406..2660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81775.15843.1prot_H-elongata_contig81775.15843.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81775 1981..2660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81775.15843.1

>prot_H-elongata_contig81775.15843.1 ID=prot_H-elongata_contig81775.15843.1|Name=mRNA_H-elongata_contig81775.15843.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
PCWQTPKHSLIHVYRDDVFLLATCTEDVNALGVIEFLHRVIEIMGDYFGG
NVDEGAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIEPPTTFARFVN
ATTGKVRWLGAEKGYT*
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mRNA from alignment at H-elongata_contig81775:1981..2660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81775.15843.1 ID=mRNA_H-elongata_contig81775.15843.1|Name=mRNA_H-elongata_contig81775.15843.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=680bp|location=Sequence derived from alignment at H-elongata_contig81775:1981..2660+ (Himanthalia elongata Himel1 dioecious)
CCGTGCTGGCAGACCCCGAAGCATAGTCTCATCCACGTGTATCGAGACGA CGTTTTCTTGCTGGCGACGTGTACAGAAGATGTGAACGCTCTTGGGGTGA GGCCAAGAACGGGAGCAGCCCGGAGAAAAATTGCGCCATGGTCATTTTTT TCTTTCTTTTTTTTTGTCAGCACTCGGCCCGTCGATTTAGCCCCAACGCG GCCCGGTTCGATGAGCATGACGGGCGAGCGAAGAGTTCCGACGCCTCATG GTTCCCATGGCGCGCAGCCCGTCCGTCCGTTTATGGCCACAAAATGTACA GCCCCAAAAAAGAGCAAATGCGTGTGTGTGTGTGTGTGTGTTCAGGGAAT GATTCACTTCGCTCCGTTCAACGATTAATCTCTGGTGCATGTGTGTTTGG GTGGGGGTCGGGGGATGGACGAAAGGTTATCGAATTTCTTCACCGCGTGA TCGAGATCATGGGGGACTACTTCGGGGGCAATGTAGACGAGGGAGCCATC AAGGAATCCTTCAGTCTTGTGTACCAGCTTTTGGAAGAGATGATGGACAA CGGTCACCCCTTGACAACGGAGCCAAACGCCCTGAAGGCCATGATAGAGC CCCCGACGACTTTCGCTCGATTCGTCAACGCCACGACGGGCAAGGTGCGT TGGTTGGGGGCTGAAAAGGGTTATACTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig81775:1981..2660+

>mRNA_H-elongata_contig81775.15843.1 ID=mRNA_H-elongata_contig81775.15843.1|Name=mRNA_H-elongata_contig81775.15843.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig81775:1981..2660+ (Himanthalia elongata Himel1 dioecious)
CCGTGCTGGCAGACCCCGAAGCATAGTCTCATCCACGTGTATCGAGACGA
CGTTTTCTTGCTGGCGACGTGTACAGAAGATGTGAACGCTCTTGGGCCGT
GCTGGCAGACCCCGAAGCATAGTCTCATCCACGTGTATCGAGACGACGTT
TTCTTGCTGGCGACGTGTACAGAAGATGTGAACGCTCTTGGGGTTATCGA
ATTTCTTCACCGCGTGATCGAGATCATGGGGGACTACTTCGGGGGCAATG
TAGACGAGGGAGCCATCAAGGAATCCTTCAGTCTTGTGTACCAGCTTTTG
GAAGAGATGATGGACAACGGTCACCCCTTGACAACGGAGCCAAACGCCCT
GAAGGCCATGATAGAGCCCCCGACGACTTTCGCTCGATTCGTCAACGCCA
CGACGGGCAAGGTGCGTTGGTTGGGGGCTGAAAAGGGTTATACTTAGGTT
ATCGAATTTCTTCACCGCGTGATCGAGATCATGGGGGACTACTTCGGGGG
CAATGTAGACGAGGGAGCCATCAAGGAATCCTTCAGTCTTGTGTACCAGC
TTTTGGAAGAGATGATGGACAACGGTCACCCCTTGACAACGGAGCCAAAC
GCCCTGAAGGCCATGATAGAGCCCCCGACGACTTTCGCTCGATTCGTCAA
CGCCACGACGGGCAAGGTGCGTTGGTTGGGGGCTGAAAAGGGTTATACTT
AG
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