mRNA_H-elongata_contig81737.15840.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81737.15840.1
Unique NamemRNA_H-elongata_contig81737.15840.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81737.15840.1 vs. uniprot
Match: D7FU12_ECTSI (GST N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU12_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.140e-69
Identity = 100/124 (80.65%), Postives = 108/124 (87.10%), Query Frame = 1
Query:   19 GVIVNVSREEEGDEGEYAFIRALGFKVVERGNTWDRKQPWKPIEIYEFEGCPFCRKVREAVNILDLDVIFYPCPQGGPNFRPKANEMGGQNQFPYLVDPNTKTSMYESDNIVNYLFEKYGEGSK 390
            G  V VSREEEGDEGEYA +RALGFKV ERGNTWDR+QP KPIEIYEFEGCPFCRKVREA+NI+D+DV+FYPCPQGGP FRPKA EMG    FPY+VDPNTKTSM ESD IV YLFE YGEG+K
Sbjct:   84 GYTVKVSREEEGDEGEYAVVRALGFKVTERGNTWDRQQPRKPIEIYEFEGCPFCRKVREAINIVDIDVVFYPCPQGGPTFRPKAKEMG-TTAFPYMVDPNTKTSMPESDEIVKYLFETYGEGAK 206          
BLAST of mRNA_H-elongata_contig81737.15840.1 vs. uniprot
Match: A0A2K1KUA5_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KUA5_PHYPA)

HSP 1 Score: 167 bits (422), Expect = 3.820e-48
Identity = 81/124 (65.32%), Postives = 94/124 (75.81%), Query Frame = 1
Query:   13 RGGVIVNVSREEEGDEGEYAFIRALGFKVVERGNTWDRKQPWKPIEIYEFEGCPFCRKVREAVNILDLDVIFYPCPQGGPNFRPKANEMGGQNQFPYLVDPNTKTSMYESDNIVNYLFEKYGEG 384
            +G  + N    E GD+ +YA I   G K VE  N   R  P KPIEIYEFEGCPFCRKVRE V+ILD+DVIFYPCP+ GPNFRPKANEMGG+ QFPY+VDPNT  +MYESD+I+ YL EKYG+G
Sbjct:  108 KGYKVENKPAAEVGDD-KYA-IPFAGRKFVEVANPGPR--PEKPIEIYEFEGCPFCRKVREIVSILDIDVIFYPCPKNGPNFRPKANEMGGKKQFPYMVDPNTNVAMYESDDIIKYLVEKYGDG 227          
BLAST of mRNA_H-elongata_contig81737.15840.1 vs. uniprot
Match: A9T3Z2_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T3Z2_PHYPA)

HSP 1 Score: 162 bits (411), Expect = 1.930e-47
Identity = 80/124 (64.52%), Postives = 93/124 (75.00%), Query Frame = 1
Query:   13 RGGVIVNVSREEEGDEGEYAFIRALGFKVVERGNTWDRKQPWKPIEIYEFEGCPFCRKVREAVNILDLDVIFYPCPQGGPNFRPKANEMGGQNQFPYLVDPNTKTSMYESDNIVNYLFEKYGEG 384
            +G  + N    E GD+ +YA   A  F  VE  N   R  P KPIEIYEFEGCPFCRKVRE V+ILD+DVIFYPCP+ GPNFRPKANEMGG+ QFPY+VDPNT  +MYESD+I+ YL EKYG+G
Sbjct:   29 KGYKVENKPAAEVGDD-KYAIPFAGIF--VEVANPGPR--PEKPIEIYEFEGCPFCRKVREIVSILDIDVIFYPCPKNGPNFRPKANEMGGKKQFPYMVDPNTNVAMYESDDIIKYLVEKYGDG 147          
BLAST of mRNA_H-elongata_contig81737.15840.1 vs. uniprot
Match: A0A2V0NQ52_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NQ52_9CHLO)

HSP 1 Score: 160 bits (404), Expect = 3.970e-46
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = 1
Query:   16 GGVIVNVSREEEGDEGEYAFIRALGFKVVERGNTWDRKQPWKPIEIYEFEGCPFCRKVREAVNILDLDVIFYPCPQGGPNFRPKANEMGGQNQFPYLVDPNTKTSMYESDNIVNYLFEKYGEGS 387
            GG     S   + D+G Y  ++  G  V E       K+P KP+E+YEF+GCPFCRKVREA+++LDLD   +PCPQGGP +RPKA E+GG+ QFPYLVDPNT  SMYESD I+ YLF++YG+G+
Sbjct:   46 GGFASGYSTGLKEDDGTYGVVKVSGRSVAESSKVSTFKRPAKPLELYEFQGCPFCRKVREAISVLDLDAAVFPCPQGGPTWRPKAVELGGKAQFPYLVDPNTGASMYESDAIIAYLFKEYGDGA 169          
BLAST of mRNA_H-elongata_contig81737.15840.1 vs. uniprot
Match: A0A5J4XKT2_9CHLO (Thioredoxin family n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XKT2_9CHLO)

HSP 1 Score: 161 bits (407), Expect = 4.020e-46
Identity = 72/123 (58.54%), Postives = 88/123 (71.54%), Query Frame = 1
Query:   16 GGVIVNVSREEEGDEGEYAFIRALGFKVVERGNTWDRKQPWKPIEIYEFEGCPFCRKVREAVNILDLDVIFYPCPQGGPNFRPKANEMGGQNQFPYLVDPNTKTSMYESDNIVNYLFEKYGEG 384
            GG  V  S + + D+G Y  ++  G KV E       K+P K IEIYEFEGCPFCRKVREAV+ILDLDV+FYPCP GGP +R K  + GG+  FPY+VDPNT ++MYESD+IV YLF  YG+G
Sbjct:   87 GGFGVGYSAKLDTDDGTYGAVKLAGRKVTETSQVGQFKRPSKMIEIYEFEGCPFCRKVREAVSILDLDVMFYPCPAGGPTWREKVKQKGGKASFPYMVDPNTGSAMYESDDIVKYLFNNYGDG 209          
BLAST of mRNA_H-elongata_contig81737.15840.1 vs. uniprot
Match: A0A8J5WCY2_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WCY2_ZIZPA)

HSP 1 Score: 161 bits (407), Expect = 5.390e-46
Identity = 75/123 (60.98%), Postives = 90/123 (73.17%), Query Frame = 1
Query:   19 GVIVNVSREEEGDEGEYAFIRALGFKVVERGNTWDRKQPWKPIEIYEFEGCPFCRKVREAVNILDLDVIFYPCPQGGPNFRPKANEMGGQNQFPYLVDPNTKTSMYESDNIVNYLFEKYGEGS 387
            G  V++   +E    +YA +  LG KV E        +P KPIEIYEFEGCPFCRKVRE V++LDLDV+FYPCPQ GP FRPK  EMGG+ QFPY+VDPNT  SMYESD+I+ YL +KYG+GS
Sbjct:  101 GYSVSLVSSDEVPPDQYA-LEFLGRKVKETSRIARCPRPEKPIEIYEFEGCPFCRKVREMVSVLDLDVLFYPCPQNGPTFRPKVLEMGGKKQFPYMVDPNTGISMYESDDIIKYLADKYGDGS 222          
BLAST of mRNA_H-elongata_contig81737.15840.1 vs. uniprot
Match: UPI0005D3B831 (uncharacterized protein LOC18444845 isoform X1 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D3B831)

HSP 1 Score: 160 bits (406), Expect = 7.610e-46
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   43 EEEGDEGEYAFIRALGFKVVERGNTWDRKQPWKPIEIYEFEGCPFCRKVREAVNILDLDVIFYPCPQGGPNFRPKANEMGGQNQFPYLVDPNTKTSMYESDNIVNYLFEKYGEGS 387
            E+E    EY F+   GFK+ E      R  P KPIEIYEFEGCPFCRKVRE V+ LDLDV++YPCP+ GPNFRPK  ++GG+ QFPY+VDPNT  +MYESD I+ YL +KYG+G+
Sbjct:  104 EKEIPPSEYVFLNFAGFKLKETSRVGPR--PTKPIEIYEFEGCPFCRKVREVVSFLDLDVLYYPCPRNGPNFRPKVLQIGGRQQFPYMVDPNTGVAMYESDAIIKYLVDKYGDGT 216          
BLAST of mRNA_H-elongata_contig81737.15840.1 vs. uniprot
Match: U5D555_AMBTC (GST N-terminal domain-containing protein n=2 Tax=Amborella trichopoda TaxID=13333 RepID=U5D555_AMBTC)

HSP 1 Score: 160 bits (406), Expect = 9.880e-46
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   43 EEEGDEGEYAFIRALGFKVVERGNTWDRKQPWKPIEIYEFEGCPFCRKVREAVNILDLDVIFYPCPQGGPNFRPKANEMGGQNQFPYLVDPNTKTSMYESDNIVNYLFEKYGEGS 387
            E+E    EY F+   GFK+ E      R  P KPIEIYEFEGCPFCRKVRE V+ LDLDV++YPCP+ GPNFRPK  ++GG+ QFPY+VDPNT  +MYESD I+ YL +KYG+G+
Sbjct:  104 EKEIPPSEYVFLNFAGFKLKETSRVGPR--PTKPIEIYEFEGCPFCRKVREVVSFLDLDVLYYPCPRNGPNFRPKVLQIGGRQQFPYMVDPNTGVAMYESDAIIKYLVDKYGDGT 216          
BLAST of mRNA_H-elongata_contig81737.15840.1 vs. uniprot
Match: A0A804IFI6_MUSAM ((wild Malaysian banana) hypothetical protein n=3 Tax=Musa TaxID=4640 RepID=A0A804IFI6_MUSAM)

HSP 1 Score: 160 bits (404), Expect = 1.250e-45
Identity = 70/123 (56.91%), Postives = 92/123 (74.80%), Query Frame = 1
Query:   19 GVIVNVSREEEGDEGEYAFIRALGFKVVERGNTWDRKQPWKPIEIYEFEGCPFCRKVREAVNILDLDVIFYPCPQGGPNFRPKANEMGGQNQFPYLVDPNTKTSMYESDNIVNYLFEKYGEGS 387
            G  V++  E++   GEYA ++  G    E  N   + +P KPIEIYEFEGCPFCRKVRE V+ILDLD+++YPCP+  PNFRPK  +MGG+ QFPY+VDPNT  +MYESD+I+ YL +KYG+G+
Sbjct:   93 GYSVSLVSEDKIPPGEYA-LKIAGLTFKETSNLGAQARPEKPIEIYEFEGCPFCRKVREIVSILDLDILYYPCPRNSPNFRPKVLQMGGKQQFPYMVDPNTGVAMYESDDIIKYLVQKYGDGT 214          
BLAST of mRNA_H-elongata_contig81737.15840.1 vs. uniprot
Match: A0A6A5MS47_LUPAL (Putative thioredoxin-like protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A6A5MS47_LUPAL)

HSP 1 Score: 160 bits (404), Expect = 1.340e-45
Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   43 EEEGDEGEYAFIRALGFKVVERGNTWDRKQPWKPIEIYEFEGCPFCRKVREAVNILDLDVIFYPCPQGGPNFRPKANEMGGQNQFPYLVDPNTKTSMYESDNIVNYLFEKYGEGS 387
            ++E   G+YA +   G+K+ E        +P KPIEIYEFE CPFCRKVRE V ILD+DV+FYPCP+ GPNFRPK  E+GG+ QFPY+VDPNT TSMYESD+I+ YL  +YG+G+
Sbjct:  102 KDEIPPGQYAMLEVNGYKLKETSKANLSPRPEKPIEIYEFESCPFCRKVREIVAILDIDVLFYPCPRNGPNFRPKVVEIGGKQQFPYMVDPNTDTSMYESDDIIRYLVGQYGDGN 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81737.15840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU12_ECTSI1.140e-6980.65GST N-terminal domain-containing protein n=2 Tax=E... [more]
A0A2K1KUA5_PHYPA3.820e-4865.32Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
A9T3Z2_PHYPA1.930e-4764.52Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A0A2V0NQ52_9CHLO3.970e-4655.65Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A5J4XKT2_9CHLO4.020e-4658.54Thioredoxin family n=1 Tax=Trebouxia sp. A1-2 TaxI... [more]
A0A8J5WCY2_ZIZPA5.390e-4660.98Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
UPI0005D3B8317.610e-4660.87uncharacterized protein LOC18444845 isoform X1 n=1... [more]
U5D555_AMBTC9.880e-4660.87GST N-terminal domain-containing protein n=2 Tax=A... [more]
A0A804IFI6_MUSAM1.250e-4556.91(wild Malaysian banana) hypothetical protein n=3 T... [more]
A0A6A5MS47_LUPAL1.340e-4560.00Putative thioredoxin-like protein n=2 Tax=Lupinus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81737contigH-elongata_contig81737:344..1418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.5
Seed ortholog evalue2.5e-55
Seed eggNOG ortholog2880.D7FU12
EggNOG free text desc.Glutathione S-transferase, N-terminal domain
EggNOG OGs28NCX@1,2QUYC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-11_003550.1
Exons3
Model size417
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81737.15840.1prot_H-elongata_contig81737.15840.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81737 344..1418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931225.2017553-CDS-H-elongata_contig81737:343..4391622931225.2017553-CDS-H-elongata_contig81737:343..439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 344..439 +
1691679749.3882613-CDS-H-elongata_contig81737:343..4391691679749.3882613-CDS-H-elongata_contig81737:343..439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 344..439 +
1622931225.221805-CDS-H-elongata_contig81737:925..10731622931225.221805-CDS-H-elongata_contig81737:925..1073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 926..1073 +
1691679749.3987467-CDS-H-elongata_contig81737:925..10731691679749.3987467-CDS-H-elongata_contig81737:925..1073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 926..1073 +
1622931225.240373-CDS-H-elongata_contig81737:1245..14181622931225.240373-CDS-H-elongata_contig81737:1245..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 1246..1418 +
1691679749.409957-CDS-H-elongata_contig81737:1245..14181691679749.409957-CDS-H-elongata_contig81737:1245..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81737 1246..1418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81737.15840.1

>prot_H-elongata_contig81737.15840.1 ID=prot_H-elongata_contig81737.15840.1|Name=mRNA_H-elongata_contig81737.15840.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MLNTRGGVIVNVSREEEGDEGEYAFIRALGFKVVERGNTWDRKQPWKPIE
IYEFEGCPFCRKVREAVNILDLDVIFYPCPQGGPNFRPKANEMGGQNQFP
YLVDPNTKTSMYESDNIVNYLFEKYGEGSKASPEAPHS*
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mRNA from alignment at H-elongata_contig81737:344..1418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81737.15840.1 ID=mRNA_H-elongata_contig81737.15840.1|Name=mRNA_H-elongata_contig81737.15840.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1075bp|location=Sequence derived from alignment at H-elongata_contig81737:344..1418+ (Himanthalia elongata Himel1 dioecious)
ATGCTGAACACCCGTGGCGGTGTAATAGTTAACGTATCAAGAGAGGAAGA AGGAGATGAGGGTGAATACGCTTTCATCCGCGCGCTAGGGTTCAAGGTGA AGATACCGTCTTGAAGTAGAAATGCCGCTTTATTTTTTTTGCGAACTCGA GTTATGCGCGATGTTTGTGGCTGTGTTTCGCGTCCATGACTACGTGCATT GGTCCTTTTCCATTCTGTTCACATTGGAGTATCCTTCGAAGGAGTCTGGT CCTGGCTCCTTGACCACCACCAGCTGCCACGATTTTGTTGTACTCAAGAG AAACTTGCTAAGGATGGCCCCTTGCACCATTTGCAGATGACGAATCTCCA TGTAGCTATTGGTGCTTCACCTTCTTGGATATAATCGTACCGCACCCCAT CGCTTCCTTCCGACATAGGGACGTCGTGAAGCAGGTTTTGTTGTTCGGTA TGGGAACGCACCAACGGTATCTAAGAGTCCAAGGGGTGACGTGACACCGA CGCGCATCAATGTGCTTGCATGTACATATATTAGTGTATGTAGCTTCGTG TTTTAAACATCTTAGCCCCCTTGGTAAAAAAGGTCGTGGAACGGGGAAAC ACTTGGGACCGAAAGCAGCCCTGGAAGCCCATCGAGATCTACGAGTTCGA GGGGTGCCCCTTCTGCCGCAAAGTGAGGGAAGCGGTGAACATCCTCGATC TCGACGTGATCTTCTACCCGTGCCCTCAGGGTGAGCACAGCGTTCTTTCC GAGAGTAGTTTAAACAATTGTCGCACACCGCGCTATTTACAAACACTACA CGTCGCAACATTTCCCGTCCTTGTCAACTTGGCAAGATTGATGAAGGACC CGCAAATAAATCATGCTTATTCTTCTACACACCGTGTGCTGTCGTCGACC AGGTGGCCCGAACTTCCGACCGAAGGCGAACGAGATGGGAGGCCAAAACC AGTTCCCGTACCTGGTAGACCCCAACACCAAGACTTCCATGTACGAGAGC GACAACATAGTCAACTATCTCTTCGAAAAATACGGGGAGGGGTCCAAGGC GAGTCCCGAAGCCCCGCACTCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig81737:344..1418+

>mRNA_H-elongata_contig81737.15840.1 ID=mRNA_H-elongata_contig81737.15840.1|Name=mRNA_H-elongata_contig81737.15840.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig81737:344..1418+ (Himanthalia elongata Himel1 dioecious)
ATGCTGAACACCCGTGGCGGTGTAATAGTTAACGTATCAAGAGAGGAAGA
AGGAGATGAGGGTGAATACGCTTTCATCCGCGCGCTAGGGTTCAAGATGC
TGAACACCCGTGGCGGTGTAATAGTTAACGTATCAAGAGAGGAAGAAGGA
GATGAGGGTGAATACGCTTTCATCCGCGCGCTAGGGTTCAAGGTCGTGGA
ACGGGGAAACACTTGGGACCGAAAGCAGCCCTGGAAGCCCATCGAGATCT
ACGAGTTCGAGGGGTGCCCCTTCTGCCGCAAAGTGAGGGAAGCGGTGAAC
ATCCTCGATCTCGACGTGATCTTCTACCCGTGCCCTCAGGGTCGTGGAAC
GGGGAAACACTTGGGACCGAAAGCAGCCCTGGAAGCCCATCGAGATCTAC
GAGTTCGAGGGGTGCCCCTTCTGCCGCAAAGTGAGGGAAGCGGTGAACAT
CCTCGATCTCGACGTGATCTTCTACCCGTGCCCTCAGGGTGGCCCGAACT
TCCGACCGAAGGCGAACGAGATGGGAGGCCAAAACCAGTTCCCGTACCTG
GTAGACCCCAACACCAAGACTTCCATGTACGAGAGCGACAACATAGTCAA
CTATCTCTTCGAAAAATACGGGGAGGGGTCCAAGGCGAGTCCCGAAGCCC
CGCACTCATAAGTGGCCCGAACTTCCGACCGAAGGCGAACGAGATGGGAG
GCCAAAACCAGTTCCCGTACCTGGTAGACCCCAACACCAAGACTTCCATG
TACGAGAGCGACAACATAGTCAACTATCTCTTCGAAAAATACGGGGAGGG
GTCCAAGGCGAGTCCCGAAGCCCCGCACTCATAA
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