mRNA_H-elongata_contig8121.15777.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 128 bits (322), Expect = 5.600e-29 Identity = 66/160 (41.25%), Postives = 102/160 (63.75%), Query Frame = 1
Query: 19 AMESPEWDDWRKAEETEMCGMVENCVYKQVTRPKDKFVVGTKMLYMKKVEQDGKIEKYKCRLVAQGF*QVKDVHYT*KYSPTPSVASIPMLLSTTATKDGELHHFDVEQAFLKADIDEELYIEIPEENQKFPGAVGRLNKAIYGLLQAGKCWNNKFAAEL 498
AM + +WRKA E E+ + V+++V RP+D+ ++G+K ++ K DG++EKYK RLVAQGF QV+ + Y ++P SI +LL+ A D E+H DV+ AFL +++EE+Y+++P ++ AV RL KA+YGL QA + W K +AEL
Sbjct: 1001 AMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAEL 1160
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA) HSP 1 Score: 118 bits (296), Expect = 5.490e-27 Identity = 71/167 (42.51%), Postives = 97/167 (58.08%), Query Frame = 2
Query: 542 MGCHITRNCKARELKIDQHLYVESMVEKFDVKKGSKI--PATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQ-GCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 1033
+G I + + R L I Q Y ES+++KF + P GV +KADEP+ E+K +M+ PYR VG+LM+ TRPDI+ AV ++RF EN G H +K++HYLL TKD GI Y G G +L EAY++ D+ D RRSVSG +LML + W
Sbjct: 82 LGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMLCGAPVVW 245
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A438BR63_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BR63_VITVI) HSP 1 Score: 116 bits (291), Expect = 1.810e-26 Identity = 62/166 (37.35%), Postives = 101/166 (60.84%), Query Frame = 2
Query: 542 MGCHITRNCKARELKIDQHLYVESMVEKFDVKKGSK--IPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQGCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 1033
+G I R+ R L + Q +Y+++++++++++ + +P +GV T S+ D P+ PEE+E M + PY AVGA+M+T+T TRPD+ A+ +R+ N G H KVV I+ YL TKD + YG EL ++ YT+ F + D +S+SG + L GA+SW
Sbjct: 24 LGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVTYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGES--ELKLKGYTDASFASDKDDSKSISGYVFTLNGGAVSW 186
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 116 bits (290), Expect = 3.260e-26 Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = 2
Query: 545 GCHITRNCKARELKIDQHLYVESMVEKFDVKKGSKIPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYG-GQGCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISWY 1036
GC R+ A LKI Q Y E + +F V+ G +IP G+ S+ D + EE+ +P+RE +G+LMW T TRPDIA+AVRAVAR+C + H + + I+ Y++ T D GI++ G L ME + + D+ + RRSVSG ++M G ISW+
Sbjct: 59 GCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGM-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWF 216
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA) HSP 1 Score: 117 bits (292), Expect = 5.670e-26 Identity = 71/167 (42.51%), Postives = 98/167 (58.68%), Query Frame = 2
Query: 542 MGCHITRNCKARELKIDQHLYVESMVEKFDVK--KGSKIPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQ-GCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 1033
+G I + + R L I Q Y ES+++KF + K P GV +KADEP+I E+K +M+ PYR VG+LM+ TRPDI+ AV ++RF EN G H +K++ YLL TKD GI Y G G +L EAY++ D+ D RRSVSG +LM+ + W
Sbjct: 114 LGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMMCGAPVVW 277
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6A3HKX1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HKX1_9STRA) HSP 1 Score: 115 bits (287), Expect = 8.090e-26 Identity = 71/167 (42.51%), Postives = 97/167 (58.08%), Query Frame = 2
Query: 542 MGCHITRNCKARELKIDQHLYVESMVEKFDVK--KGSKIPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQ-GCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 1033
+G I + + R L I Q Y ES+++KF + K P GV +KADEP+ E K +M+ PYR VG+LM+ TRPDI+ AV ++RF EN G H +K++ YLL TKD GI Y G G +L EAY++ D+ D RRSVSG +LML ++ W
Sbjct: 34 VGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEVKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENSGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMLCGASVVW 197
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 117 bits (292), Expect = 8.650e-26 Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = 2
Query: 545 GCHITRNCKARELKIDQHLYVESMVEKFDVKKGSKIPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYG-GQGCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISWY 1036
GC R+ A LKI Q Y E + +F V+ G +IP G+ S+ D + EE+ +P+RE +G+LMW T TRPDIA+AVRAVAR+C + H + + I+ Y++ T D GI++ G L ME + + D+ + RRSVSG ++M G ISW+
Sbjct: 160 GCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWF 317
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6A3PU23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PU23_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.060e-25 Identity = 68/156 (43.59%), Postives = 91/156 (58.33%), Query Frame = 2
Query: 575 RELKIDQHLYVESMVEKFDVK--KGSKIPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQ-GCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 1033
R L I Q Y ES+++KF + K P GV +KADEP+ E+K +M+ PYR VG+LM+ TRPDI+ AV ++RF EN G H +K++ YLL TKD GI Y G G +L EAY++ D+ D R SVSG +LML + W
Sbjct: 4 RTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRHSVSGTLLMLCDAPVMW 156
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI) HSP 1 Score: 118 bits (295), Expect = 1.600e-25 Identity = 63/166 (37.95%), Postives = 102/166 (61.45%), Query Frame = 2
Query: 542 MGCHITRNCKARELKIDQHLYVESMVEKFDVKKGSK--IPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQGCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 1033
+G I R+ R L + Q +Y+++++++++++ + +P +GV T S+ D P+ PEE+E M + PY AVGA+M+T+T TRPD+A A+ +R+ N G H KVV I+ YL TKD + YG EL ++ YT+ F + D +S+SG + L GA+SW
Sbjct: 543 LGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGES--ELKLKGYTDASFASDKDDSKSISGYVFTLNGGAVSW 705
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6A3GJM7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GJM7_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.920e-25 Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = 2
Query: 542 MGCHITRNCKARELKIDQHLYVESMVEKFDVKKGSKI--PATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQ-GCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 1033
+G I + + R L I Q Y ES+++KF + P GV +KADEP+ E+K +M+ PYR VG+LM+ TRPDI+ AV ++RF E G H +K++HYLL TKD GI Y G G +L EAY++ D+ D RRSVSG +LML + W
Sbjct: 298 LGIEIDYDMERRTLGISQRAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLEKPGEKHWDAGIKVVHYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGILLMLCGAPVVW 461 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8121.15777.1 >prot_H-elongata_contig8121.15777.1 ID=prot_H-elongata_contig8121.15777.1|Name=mRNA_H-elongata_contig8121.15777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp MGCHITRNCKARELKIDQHLYVESMVEKFDVKKGSKIPATSGVPTFSKADback to top mRNA from alignment at H-elongata_contig8121:8445..9636+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8121.15777.1 ID=mRNA_H-elongata_contig8121.15777.1|Name=mRNA_H-elongata_contig8121.15777.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1192bp|location=Sequence derived from alignment at H-elongata_contig8121:8445..9636+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8121:8445..9636+ >mRNA_H-elongata_contig8121.15777.1 ID=mRNA_H-elongata_contig8121.15777.1|Name=mRNA_H-elongata_contig8121.15777.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig8121:8445..9636+ (Himanthalia elongata Himel1 dioecious)back to top |