prot_H-elongata_contig8121.15777.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8121.15777.1
Unique Nameprot_H-elongata_contig8121.15777.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length166
Homology
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.150e-29
Identity = 71/167 (42.51%), Postives = 97/167 (58.08%), Query Frame = 0
Query:    1 MGCHITRNCKARELKIDQHLYVESMVEKFDVKKGSKI--PATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQ-GCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 164
            +G  I  + + R L I Q  Y ES+++KF  +       P   GV   +KADEP+  E+K +M+  PYR  VG+LM+    TRPDI+ AV  ++RF EN G  H    +K++HYLL TKD GI Y G  G +L  EAY++ D+    D RRSVSG +LML    + W
Sbjct:   82 LGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMLCGAPVVW 245          
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A438BR63_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BR63_VITVI)

HSP 1 Score: 116 bits (291), Expect = 1.450e-28
Identity = 62/166 (37.35%), Postives = 101/166 (60.84%), Query Frame = 0
Query:    1 MGCHITRNCKARELKIDQHLYVESMVEKFDVKKGSK--IPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQGCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 164
            +G  I R+   R L + Q +Y+++++++++++   +  +P  +GV T S+ D P+ PEE+E M + PY  AVGA+M+T+T TRPD+  A+   +R+  N G  H KVV  I+ YL  TKD  + YG    EL ++ YT+  F +  D  +S+SG +  L  GA+SW
Sbjct:   24 LGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVTYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGES--ELKLKGYTDASFASDKDDSKSISGYVFTLNGGAVSW 186          
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.630e-28
Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = 0
Query:    2 GCHITRNCKARELKIDQHLYVESMVEKFDVKKGSKIPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYG-GQGCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISWY 165
            GC   R+  A  LKI Q  Y E +  +F V+ G +IP   G+   S+ D      + EE+  +P+RE +G+LMW  T TRPDIA+AVRAVAR+C +    H +  + I+ Y++ T D GI++  G    L ME + + D+ +    RRSVSG ++M   G ISW+
Sbjct:   59 GCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGM-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWF 216          
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.420e-28
Identity = 71/167 (42.51%), Postives = 98/167 (58.68%), Query Frame = 0
Query:    1 MGCHITRNCKARELKIDQHLYVESMVEKFDVK--KGSKIPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQ-GCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 164
            +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV   +KADEP+I E+K +M+  PYR  VG+LM+    TRPDI+ AV  ++RF EN G  H    +K++ YLL TKD GI Y G  G +L  EAY++ D+    D RRSVSG +LM+    + W
Sbjct:  114 LGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMMCGAPVVW 277          
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 6.700e-28
Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = 0
Query:    2 GCHITRNCKARELKIDQHLYVESMVEKFDVKKGSKIPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYG-GQGCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISWY 165
            GC   R+  A  LKI Q  Y E +  +F V+ G +IP   G+   S+ D      + EE+  +P+RE +G+LMW  T TRPDIA+AVRAVAR+C +    H +  + I+ Y++ T D GI++  G    L ME + + D+ +    RRSVSG ++M   G ISW+
Sbjct:  160 GCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWF 317          
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6A3HKX1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HKX1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.730e-28
Identity = 71/167 (42.51%), Postives = 97/167 (58.08%), Query Frame = 0
Query:    1 MGCHITRNCKARELKIDQHLYVESMVEKFDVK--KGSKIPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQ-GCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 164
            +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV   +KADEP+  E K +M+  PYR  VG+LM+    TRPDI+ AV  ++RF EN G  H    +K++ YLL TKD GI Y G  G +L  EAY++ D+    D RRSVSG +LML   ++ W
Sbjct:   34 VGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEVKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENSGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMLCGASVVW 197          
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6A3PU23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PU23_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.920e-28
Identity = 68/156 (43.59%), Postives = 91/156 (58.33%), Query Frame = 0
Query:   12 RELKIDQHLYVESMVEKFDVK--KGSKIPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQ-GCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 164
            R L I Q  Y ES+++KF  +  K    P   GV   +KADEP+  E+K +M+  PYR  VG+LM+    TRPDI+ AV  ++RF EN G  H    +K++ YLL TKD GI Y G  G +L  EAY++ D+    D R SVSG +LML    + W
Sbjct:    4 RTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRHSVSGTLLMLCDAPVMW 156          
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI)

HSP 1 Score: 118 bits (295), Expect = 1.040e-27
Identity = 63/166 (37.95%), Postives = 102/166 (61.45%), Query Frame = 0
Query:    1 MGCHITRNCKARELKIDQHLYVESMVEKFDVKKGSK--IPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQGCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 164
            +G  I R+   R L + Q +Y+++++++++++   +  +P  +GV T S+ D P+ PEE+E M + PY  AVGA+M+T+T TRPD+A A+   +R+  N G  H KVV  I+ YL  TKD  + YG    EL ++ YT+  F +  D  +S+SG +  L  GA+SW
Sbjct:  543 LGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGES--ELKLKGYTDASFASDKDDSKSISGYVFTLNGGAVSW 705          
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6A3GJM7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GJM7_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.480e-27
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = 0
Query:    1 MGCHITRNCKARELKIDQHLYVESMVEKFDVKKGSKI--PATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYGGQ-GCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISW 164
            +G  I  + + R L I Q  Y ES+++KF  +       P   GV   +KADEP+  E+K +M+  PYR  VG+LM+    TRPDI+ AV  ++RF E  G  H    +K++HYLL TKD GI Y G  G +L  EAY++ D+    D RRSVSG +LML    + W
Sbjct:  298 LGIEIDYDMERRTLGISQRAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLEKPGEKHWDAGIKVVHYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGILLMLCGAPVVW 461          
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.750e-27
Identity = 64/165 (38.79%), Postives = 95/165 (57.58%), Query Frame = 0
Query:    2 GCHITRNCKARELKIDQHLYVESMVEKFDVKKGSKIPATSGVPTFSKADEPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGPAHTKVVMKIMHYLLHTKDWGISYG-GQGCELCMEAYTNLDFGACLDTRRSVSGAMLMLAKGAISWY 165
            GC   R+  A  LKI Q  Y E +  +F V+ G +IP   G+   S+ D      + EE+  +P+RE +G+LMW  T TRPDIA+AVRAVAR+C +    H +  + I+ Y++ T + GI++  G    L ME + + D+ +    RRSVSG ++M   G ISW+
Sbjct:  101 GCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWF 258          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8121.15777.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3GCN4_9STRA4.150e-2942.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438BR63_VITVI1.450e-2837.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KR24_9PHAE2.630e-2839.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4F359_9STRA4.420e-2842.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE6.700e-2839.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3HKX1_9STRA6.730e-2842.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3PU23_9STRA9.920e-2843.59Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A438K5H3_VITVI1.040e-2737.95Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3GJM7_9STRA1.480e-2741.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0Z9_9PHAE1.750e-2738.79Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8121contigH-elongata_contig8121:9139..9636 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8121.15777.1mRNA_H-elongata_contig8121.15777.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8121 8445..9636 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8121.15777.1 ID=prot_H-elongata_contig8121.15777.1|Name=mRNA_H-elongata_contig8121.15777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
MGCHITRNCKARELKIDQHLYVESMVEKFDVKKGSKIPATSGVPTFSKAD
EPRIPEEKEEMRKFPYREAVGALMWTVTMTRPDIASAVRAVARFCENLGP
AHTKVVMKIMHYLLHTKDWGISYGGQGCELCMEAYTNLDFGACLDTRRSV
SGAMLMLAKGAISWY*
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