mRNA_H-elongata_contig81085.15763.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81085.15763.1
Unique NamemRNA_H-elongata_contig81085.15763.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81085.15763.1 vs. uniprot
Match: D7FMB0_ECTSI (Similar to Solute carrier family 25 (Mitochondrial carrier citrate transporter), member 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMB0_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 4.480e-26
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 AQEAGVTYSKVARDTISQRGFSGFYRGLSSMVYFAAPKAAIRFGSFEFFSGLLSTPDGGDKYGLGSVR 204
            +++  VTY  V R+T+   GFSGFYRGLSSMVYFAAPKAAIRFG+FEF SGLLSTP+GGDKYGLG+ +
Sbjct:   43 SKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSTPEGGDKYGLGAAK 110
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BLAST of mRNA_H-elongata_contig81085.15763.1 vs. uniprot
Match: W7TKG4_9STRA (Solute carrier family 25 (Mitochondrial carrier citrate transporter) member 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKG4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.890e-21
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:   16 VTYSKVARDTISQRGFSGFYRGLSSMVYFAAPKAAIRFGSFEFFSGLLSTPDGGDKYGLGSVR 204
            V+  +V  +T+++RGF GFYRGLSSM+YFAAPKAAIRF SFEFFSGLL+  +GGDKYGLG  +
Sbjct:   46 VSVKQVISETMAERGFFGFYRGLSSMLYFAAPKAAIRFSSFEFFSGLLTDANGGDKYGLGQAK 108
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BLAST of mRNA_H-elongata_contig81085.15763.1 vs. uniprot
Match: A0A7S1VIB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIB4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.070e-14
Identity = 39/63 (61.90%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:   16 VTYSKVARDTISQRGFSGFYRGLSSMVYFAAPKAAIRFGSFEFFSGLLSTPDGGDKYGLGSVR 204
            VT   V   T ++ G  GFYRGL SMVYFAAPKAAIRF +FE  SGLLS P+G D YGLG  +
Sbjct:   45 VTAGNVISTTFAEAGPVGFYRGLPSMVYFAAPKAAIRFAAFETCSGLLSGPNGEDIYGLGKAK 107
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BLAST of mRNA_H-elongata_contig81085.15763.1 vs. uniprot
Match: A0A0M0J9A5_9EUKA (Tricarboxylate transport mitochondrial n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J9A5_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 3.250e-11
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   28 KVARDTISQRGFSGFYRGLSSMVYFAAPKAAIRFGSFEFFSGLLSTPDGGDKYG 189
            KV RDT+   G  GFYRGLSSMVYFA PKAA+RF +FE  S +L T DG   +G
Sbjct:   51 KVVRDTLKTHGPLGFYRGLSSMVYFATPKAALRFSAFEAASDMLKTSDGKPMFG 104
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BLAST of mRNA_H-elongata_contig81085.15763.1 vs. uniprot
Match: A0A6U3C197_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3C197_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 1.030e-10
Identity = 33/63 (52.38%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   16 VTYSKVARDTISQRGFSGFYRGLSSMVYFAAPKAAIRFGSFEFFSGLLSTPDGGDKYGLGSVR 204
            ++   V   T+   G  G YRGLSSM+YFA PKAAIRFG FE  S +L   DG D YGLG  +
Sbjct:   47 LSMGNVVSRTLKSAGPLGMYRGLSSMLYFATPKAAIRFGGFETCSSMLVDKDGRDIYGLGKAK 109
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BLAST of mRNA_H-elongata_contig81085.15763.1 vs. uniprot
Match: A0A7S2I9W3_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2I9W3_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 1.500e-10
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   31 VARDTISQRGFSGFYRGLSSMVYFAAPKAAIRFGSFEFFSGLLSTPDGGDKYG 189
            V R+T++  G  GFYRGLSSMVYFA PKAAIRF SFE  S  L+T DG   +G
Sbjct:   50 VVRNTMANEGPIGFYRGLSSMVYFATPKAAIRFSSFEAASAALTTSDGKPMFG 102
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BLAST of mRNA_H-elongata_contig81085.15763.1 vs. uniprot
Match: A0A7S0END0_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0END0_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 5.510e-9
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:   19 TYSKVARDTISQRGFSGFYRGLSSMVYFAAPKAAIRFGSFEFFSGLLSTPDGGDKYG 189
            T   V ++T+  RG  G Y+GL SMVYFA PKAAIRF  FE  S  +  PDG   +G
Sbjct:   47 TAMDVVKNTVRTRGVLGLYKGLDSMVYFATPKAAIRFSGFEAASNAMRAPDGSPMFG 103
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BLAST of mRNA_H-elongata_contig81085.15763.1 vs. uniprot
Match: UPI0013042DBF (putative tricarboxylate transport protein, mitochondrial n=1 Tax=Nomia melanderi TaxID=2448451 RepID=UPI0013042DBF)

HSP 1 Score: 54.7 bits (130), Expect = 6.560e-7
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   43 TISQRGFSGFYRGLSSMVYFAAPKAAIRFGSFEFFSGLLSTPDG 174
            TI  RGF GFYRGLS ++Y + PK+A+RFGSFE   G+L   +G
Sbjct:   94 TIQNRGFFGFYRGLSVLLYGSIPKSAVRFGSFETMKGILVDENG 137
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BLAST of mRNA_H-elongata_contig81085.15763.1 vs. uniprot
Match: UPI001602D79B (tricarboxylate transport protein, mitochondrial-like isoform X3 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001602D79B)

HSP 1 Score: 54.3 bits (129), Expect = 9.030e-7
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   43 TISQRGFSGFYRGLSSMVYFAAPKAAIRFGSFEFFSGLLSTPDG 174
            T+   G  G YRGLSS+VY + PKAA+RFG+FEFFS ++    G
Sbjct:   99 TVRDHGVRGLYRGLSSLVYGSIPKAAVRFGAFEFFSNMMRNERG 142
[Close]
BLAST of mRNA_H-elongata_contig81085.15763.1 vs. uniprot
Match: A0A6P4YZP3_BRABE (tricarboxylate transport protein, mitochondrial-like isoform X1 n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YZP3_BRABE)

HSP 1 Score: 54.3 bits (129), Expect = 9.070e-7
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   43 TISQRGFSGFYRGLSSMVYFAAPKAAIRFGSFEFFSGLLSTPDG 174
            T+   G  G YRGLSS+VY + PKAA+RFG+FEFFS ++    G
Sbjct:   97 TVRDHGVRGLYRGLSSLVYGSIPKAAVRFGAFEFFSNMMRNERG 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81085.15763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMB0_ECTSI4.480e-2672.06Similar to Solute carrier family 25 (Mitochondrial... [more]
W7TKG4_9STRA6.890e-2168.25Solute carrier family 25 (Mitochondrial carrier ci... [more]
A0A7S1VIB4_9STRA2.070e-1461.90Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A0M0J9A5_9EUKA3.250e-1161.11Tricarboxylate transport mitochondrial n=1 Tax=Chr... [more]
A0A6U3C197_9EUKA1.030e-1052.38Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2I9W3_9EUKA1.500e-1062.26Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0END0_9EUKA5.510e-950.88Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
UPI0013042DBF6.560e-756.82putative tricarboxylate transport protein, mitocho... [more]
UPI001602D79B9.030e-754.55tricarboxylate transport protein, mitochondrial-li... [more]
A0A6P4YZP3_BRABE9.070e-754.55tricarboxylate transport protein, mitochondrial-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81085contigH-elongata_contig81085:179..406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue3.8e-21
Seed eggNOG ortholog2880.D7FMB0
Preferred nameSLC25A1
KEGG koko:K04646,ko:K15100
KEGG TC2.A.29.7
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006842,GO:0006843,GO:0006855,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015137,GO:0015142,GO:0015238,GO:0015318,GO:0015711,GO:0015746,GO:0015849,GO:0015893,GO:0016006,GO:0016020,GO:0016021,GO:0016051,GO:0018130,GO:0019318,GO:0019319,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034220,GO:0034641,GO:0034654,GO:0035337,GO:0035383,GO:0035384,GO:0035674,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046364,GO:0046390,GO:0046483,GO:0046942,GO:0046943,GO:0046949,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0055085,GO:0055086,GO:0071616,GO:0071702,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098656,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1903825,GO:1905039,GO:1990542,GO:1990546
EggNOG free text desc.mitochondrial tricarboxylic acid transmembrane transport
EggNOG OGsKOG0756@1,KOG0756@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial substrate/solute carrier
Ec32 orthologEc-17_003620.1
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931217.2700903-CDS-H-elongata_contig81085:178..4061622931217.2700903-CDS-H-elongata_contig81085:178..406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81085 179..406 +
1691679745.8679447-CDS-H-elongata_contig81085:178..4061691679745.8679447-CDS-H-elongata_contig81085:178..406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81085 179..406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81085.15763.1prot_H-elongata_contig81085.15763.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81085 179..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81085.15763.1

>prot_H-elongata_contig81085.15763.1 ID=prot_H-elongata_contig81085.15763.1|Name=mRNA_H-elongata_contig81085.15763.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
AQEAGVTYSKVARDTISQRGFSGFYRGLSSMVYFAAPKAAIRFGSFEFFS
GLLSTPDGGDKYGLGSVREGRGRGY*
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mRNA from alignment at H-elongata_contig81085:179..406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81085.15763.1 ID=mRNA_H-elongata_contig81085.15763.1|Name=mRNA_H-elongata_contig81085.15763.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig81085:179..406+ (Himanthalia elongata Himel1 dioecious)
GCACAGGAAGCCGGGGTCACCTACTCGAAGGTGGCGAGGGATACGATAAG
CCAGCGAGGATTCTCGGGCTTCTACCGCGGACTTTCCTCCATGGTGTACT
TTGCCGCGCCCAAAGCCGCCATCCGCTTCGGGTCGTTCGAGTTTTTCTCT
GGTCTCCTGTCCACTCCCGACGGCGGAGACAAATACGGCCTCGGCTCGGT
AAGAGAGGGAAGGGGGAGAGGGTATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig81085:179..406+

>mRNA_H-elongata_contig81085.15763.1 ID=mRNA_H-elongata_contig81085.15763.1|Name=mRNA_H-elongata_contig81085.15763.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig81085:179..406+ (Himanthalia elongata Himel1 dioecious)
GCACAGGAAGCCGGGGTCACCTACTCGAAGGTGGCGAGGGATACGATAAG
CCAGCGAGGATTCTCGGGCTTCTACCGCGGACTTTCCTCCATGGTGTACT
TTGCCGCGCCCAAAGCCGCCATCCGCTTCGGGTCGTTCGAGTTTTTCTCT
GGTCTCCTGTCCACTCCCGACGGCGGAGACAAATACGGCCTCGGCTCGGT
AAGAGAGGGAAGGGGGAGAGGGTATTGAGCACAGGAAGCCGGGGTCACCT
ACTCGAAGGTGGCGAGGGATACGATAAGCCAGCGAGGATTCTCGGGCTTC
TACCGCGGACTTTCCTCCATGGTGTACTTTGCCGCGCCCAAAGCCGCCAT
CCGCTTCGGGTCGTTCGAGTTTTTCTCTGGTCTCCTGTCCACTCCCGACG
GCGGAGACAAATACGGCCTCGGCTCGGTAAGAGAGGGAAGGGGGAGAGGG
TATTGA
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