mRNA_H-elongata_contig80983.15759.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80983.15759.1
Unique NamemRNA_H-elongata_contig80983.15759.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.260e-12
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:   10 ADSRASCHMTDTGSEMYDLKPPPSGREFITIGGHRTLRVQCVGNIDVAFC------ERNDKFTLVDVSLVPGLGFNLYSL 231
            ADS A+     +  +M+DL+P P+G+E+I +G    LRVQCVG +++AF       ER+ +  + DV +VPG+ FNL+SL
Sbjct:  642 ADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSL 721
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BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 6.380e-11
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:   10 ADSRASCHMTDTGSEMYDLKPPPSGREFITIGGHRTLRVQCVGNIDVAFC------ERNDKFTLVDVSLVPGLGFNLYSL 231
            ADS A+     +  +M+DL+P P+G+E+I +G    LRVQC+G +++AF       ER+    + DV +VPG+ FNL+SL
Sbjct:  340 ADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGAYLRVQCLGTVNMAFHMQDQGGERDFCVQMSDVYVVPGITFNLFSL 419
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BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Match: A0A6H5JX85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX85_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.630e-9
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   55 MYDLKPPPSGREFITIGGHRTLRVQCVGNIDVAFC------ERNDKFTLVDVSLVPGLGFNLYSL 231
            M+DL+P P+G+E+I +G    LRVQC+G +++AF       ER+    + DV +VPG+ FNL+SL
Sbjct:    1 MFDLRPVPTGKEYIQVGNGACLRVQCLGTVNMAFHMQDQGGERDVCVQMSDVYVVPGITFNLFSL 65
[Close]
BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Match: A0A6H5JA11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA11_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.320e-9
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:   55 MYDLKPPPSGREFITIGGHRTLRVQCVGNIDVAFC------ERNDKFTLVDVSLVPGLGFNLYSL 231
            M+DL+P P+G+E+I +G    LRVQCVG +++AF       ER+      DV +VPG+ FN +SL
Sbjct:    1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQRGERDFCVQTSDVYVVPGITFNFFSL 65
[Close]
BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.760e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   55 MYDLKPPPSGREFITIGGHRTLRVQCVGNIDVAFCERNDKFTL------VDVSLVPGLGFNLYSL 231
            M+DL+P P+G+E+I +G    LRVQCVG +++AF  ++    L       DV +VPG+ FNL+SL
Sbjct:    1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQGGELDFCVQMSDVYVVPGITFNLFSL 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K3I1_9PHAE5.260e-1242.50Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5JCK7_9PHAE6.380e-1141.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JX85_9PHAE3.630e-944.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA11_9PHAE6.320e-944.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU31_9PHAE1.760e-844.62Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80983contigH-elongata_contig80983:1894..2124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931216.6086626-CDS-H-elongata_contig80983:1893..21241622931216.6086626-CDS-H-elongata_contig80983:1893..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80983 1894..2124 -
1691679745.5199094-CDS-H-elongata_contig80983:1893..21241691679745.5199094-CDS-H-elongata_contig80983:1893..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80983 1894..2124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80983.15759.1prot_H-elongata_contig80983.15759.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80983 1894..2124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80983.15759.1

>prot_H-elongata_contig80983.15759.1 ID=prot_H-elongata_contig80983.15759.1|Name=mRNA_H-elongata_contig80983.15759.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
VWIADSRASCHMTDTGSEMYDLKPPPSGREFITIGGHRTLRVQCVGNIDV
AFCERNDKFTLVDVSLVPGLGFNLYSL
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mRNA from alignment at H-elongata_contig80983:1894..2124-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80983.15759.1 ID=mRNA_H-elongata_contig80983.15759.1|Name=mRNA_H-elongata_contig80983.15759.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig80983:1894..2124- (Himanthalia elongata Himel1 dioecious)
GTCTGGATAGCAGATAGTCGTGCATCCTGCCACATGACCGACACTGGTTC
AGAAATGTACGATTTGAAACCGCCCCCGTCAGGTCGAGAATTTATCACGA
TTGGCGGACATAGAACATTGAGGGTCCAATGTGTAGGAAACATAGACGTA
GCATTTTGTGAAAGAAATGATAAATTCACTTTGGTAGACGTATCCCTCGT
TCCAGGGCTTGGATTCAATCTGTACTCATTG
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Coding sequence (CDS) from alignment at H-elongata_contig80983:1894..2124-

>mRNA_H-elongata_contig80983.15759.1 ID=mRNA_H-elongata_contig80983.15759.1|Name=mRNA_H-elongata_contig80983.15759.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig80983:1894..2124- (Himanthalia elongata Himel1 dioecious)
GTCTGGATAGCAGATAGTCGTGCATCCTGCCACATGACCGACACTGGTTC
AGAAATGTACGATTTGAAACCGCCCCCGTCAGGTCGAGAATTTATCACGA
TTGGCGGACATAGAACATTGAGGGTCCAATGTGTAGGAAACATAGACGTA
GCATTTTGTGAAAGAAATGATAAATTCACTTTGGTAGACGTATCCCTCGT
TCCAGGGCTTGGATTCAATCTGTACTCATTGGTCTGGATAGCAGATAGTC
GTGCATCCTGCCACATGACCGACACTGGTTCAGAAATGTACGATTTGAAA
CCGCCCCCGTCAGGTCGAGAATTTATCACGATTGGCGGACATAGAACATT
GAGGGTCCAATGTGTAGGAAACATAGACGTAGCATTTTGTGAAAGAAATG
ATAAATTCACTTTGGTAGACGTATCCCTCGTTCCAGGGCTTGGATTCAAT
CTGTACTCATTG
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