prot_H-elongata_contig80983.15759.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80983.15759.1
Unique Nameprot_H-elongata_contig80983.15759.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length77
Homology
BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.260e-12
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 0
Query:    4 ADSRASCHMTDTGSEMYDLKPPPSGREFITIGGHRTLRVQCVGNIDVAFC------ERNDKFTLVDVSLVPGLGFNLYSL 77
            ADS A+     +  +M+DL+P P+G+E+I +G    LRVQCVG +++AF       ER+ +  + DV +VPG+ FNL+SL
Sbjct:  642 ADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSL 721          
BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 6.380e-11
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 0
Query:    4 ADSRASCHMTDTGSEMYDLKPPPSGREFITIGGHRTLRVQCVGNIDVAFC------ERNDKFTLVDVSLVPGLGFNLYSL 77
            ADS A+     +  +M+DL+P P+G+E+I +G    LRVQC+G +++AF       ER+    + DV +VPG+ FNL+SL
Sbjct:  340 ADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGAYLRVQCLGTVNMAFHMQDQGGERDFCVQMSDVYVVPGITFNLFSL 419          
BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Match: A0A6H5JX85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX85_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.630e-9
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0
Query:   19 MYDLKPPPSGREFITIGGHRTLRVQCVGNIDVAFC------ERNDKFTLVDVSLVPGLGFNLYSL 77
            M+DL+P P+G+E+I +G    LRVQC+G +++AF       ER+    + DV +VPG+ FNL+SL
Sbjct:    1 MFDLRPVPTGKEYIQVGNGACLRVQCLGTVNMAFHMQDQGGERDVCVQMSDVYVVPGITFNLFSL 65          
BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Match: A0A6H5JA11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA11_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.320e-9
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 0
Query:   19 MYDLKPPPSGREFITIGGHRTLRVQCVGNIDVAFC------ERNDKFTLVDVSLVPGLGFNLYSL 77
            M+DL+P P+G+E+I +G    LRVQCVG +++AF       ER+      DV +VPG+ FN +SL
Sbjct:    1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQRGERDFCVQTSDVYVVPGITFNFFSL 65          
BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.760e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0
Query:   19 MYDLKPPPSGREFITIGGHRTLRVQCVGNIDVAFCERNDKFTL------VDVSLVPGLGFNLYSL 77
            M+DL+P P+G+E+I +G    LRVQCVG +++AF  ++    L       DV +VPG+ FNL+SL
Sbjct:    1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQGGELDFCVQMSDVYVVPGITFNLFSL 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80983.15759.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K3I1_9PHAE5.260e-1242.50Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5JCK7_9PHAE6.380e-1141.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JX85_9PHAE3.630e-944.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA11_9PHAE6.320e-944.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU31_9PHAE1.760e-844.62Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80983contigH-elongata_contig80983:1894..2124 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80983.15759.1mRNA_H-elongata_contig80983.15759.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80983 1894..2124 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80983.15759.1 ID=prot_H-elongata_contig80983.15759.1|Name=mRNA_H-elongata_contig80983.15759.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
VWIADSRASCHMTDTGSEMYDLKPPPSGREFITIGGHRTLRVQCVGNIDV
AFCERNDKFTLVDVSLVPGLGFNLYSL
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