mRNA_H-elongata_contig80982.15758.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80982.15758.1
Unique NamemRNA_H-elongata_contig80982.15758.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.590e-17
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
            GQ Y+Q   F YLG  ++  GD+  EI  R+  AW C  +Y R ++D P      K+R L+AE +E +LY C+TW+  SG +  LR  H R+L
Sbjct:  348 GQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLL 440          
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.640e-15
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAH 267
            G ++ Q   F YLG  I   G +  EI  R   A  CF + S+A+YD P   +  KVR L+AEV+E +LY CVTW L   ++ KLR AH
Sbjct:  119 GMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAH 207          
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A6H5JG33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG33_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.910e-15
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
            GQ Y+Q   F YLG  ++   D+  EI  R+  AW C  +Y R ++D P      K+R L+AE +E +LY   TW+  SG++ +LR  H R+L
Sbjct:  238 GQKYAQTTEFRYLGGLVNEHCDLTREINYRSRGAWACSRRYGRELFDRPKAPFRRKIRLLQAEAMEALLYGYTTWSALSGNYQRLRSIHHRLL 330          
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: UPI00077A9CA8 (uncharacterized protein LOC107358129 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A9CA8)

HSP 1 Score: 59.7 bits (143), Expect = 8.530e-9
Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = 1
Query:    1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
            GQ    V+TF YLGSTIS    +  EI +R   A + F + S  V++   I++ +K++  +A VL  +LY   TWT+       L   H R L
Sbjct:   41 GQTLQAVETFTYLGSTISRTATIDAEINKRISKASSAFGRLSEKVWERREISLENKLKVYRAVVLTTLLYGSETWTVYRRHEKLLNHFHLRCL 133          
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A6H5JIS7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.140e-8
Identity = 32/81 (39.51%), Postives = 45/81 (55.56%), Query Frame = 1
Query:    1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTD---KVRFLKAEVLEVMLYDCVTWTLS 234
            GQ Y Q D F YLG TI + G    EI  R+  AW C+ + +  V         D   K+R L+AEV+E +LY+C +W+L+
Sbjct:  155 GQTYKQTDQFVYLGHTIFADGKADREITSRSCRAWKCYRRNAGTVLRCTTWRRADLQLKIRLLQAEVVETLLYECSSWSLT 235          
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A5C6MLY4_9TELE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6MLY4_9TELE)

HSP 1 Score: 58.2 bits (139), Expect = 7.360e-8
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   19 VDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
            V+TF YLGSTIS    +  E+ +R G A + F K +  V+DN  +    KV+  +A V+  +LY   TWTL S    +L   + R L
Sbjct:  139 VNTFTYLGSTISDNLSLDVELSKRIGKAASTFRKLTERVWDNGKLTTHTKVQVYRACVISTLLYGSETWTLYSHQERRLNSFYLRCL 225          
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: UPI001FB8472B (uncharacterized protein LOC125044886 n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB8472B)

HSP 1 Score: 57.8 bits (138), Expect = 7.400e-8
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWT 228
            GQ    VD+F YLGST+S   ++G E+  R   A + F +    V++   +++T K++  +A VL  +LY C TWT
Sbjct:  169 GQELQAVDSFTYLGSTLSRAVNIGAEVINRIAKASSAFGRLRENVWERTGLSLTTKLKVYRAVVLTTLLYACETWT 244          
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A5C6N528_9TELE (Reverse transcriptase domain-containing protein n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6N528_9TELE)

HSP 1 Score: 57.8 bits (138), Expect = 9.500e-8
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   19 VDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
            ++TF YLGSTI+    +  E+ RR G A + F K +  V+DN  +    KV+  +A V+  +LY   TWTL S    +L   + R L
Sbjct:   63 INTFTYLGSTITENLSLDVELSRRIGKAASTFRKLTERVWDNGKLTTHTKVQVYRACVISTLLYGSETWTLYSHQERRLNSFYLRCL 149          
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: UPI001FB7CC25 (uncharacterized protein LOC125047580 n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB7CC25)

HSP 1 Score: 56.6 bits (135), Expect = 2.650e-7
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 1
Query:    1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
            GQ    VD+F YLGST+S   ++  E+  R   A + F +    V++   +++T K++  +A VL  +LY C TW + S    +L   H   L
Sbjct:  119 GQELQAVDSFTYLGSTLSRAVNIDAEVINRIAKASSAFGRLRENVWERRGLSLTTKLKVYRAVVLTTLLYACETWAVYSRHAKQLNRFHLSCL 211          
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A183TEZ8_SCHSO (Reverse transcriptase domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TEZ8_SCHSO)

HSP 1 Score: 56.6 bits (135), Expect = 2.770e-7
Identity = 33/93 (35.48%), Postives = 45/93 (48.39%), Query Frame = 1
Query:    1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
            G     V+TFAYLGST+S    +  E  +R   A   F +   +V++   I +  K++  KA VL  +LY   TWTL S    KL   H   L
Sbjct:  161 GAQLKNVETFAYLGSTLSRNAKIDDEFAQRISKASQAFGRLQASVWNRHSIHLNTKLKMYKAVVLTTLLYGAETWTLYSNLAMKLNHFHLSCL 253          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBT2_9PHAE6.590e-1740.86Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K2J8_9PHAE2.640e-1543.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG33_9PHAE6.910e-1538.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00077A9CA88.530e-935.48uncharacterized protein LOC107358129 n=1 Tax=Acrop... [more]
A0A6H5JIS7_9PHAE1.140e-839.51Reverse transcriptase domain-containing protein n=... [more]
A0A5C6MLY4_9TELE7.360e-837.93Reverse transcriptase domain-containing protein (F... [more]
UPI001FB8472B7.400e-836.84uncharacterized protein LOC125044886 n=1 Tax=Penae... [more]
A0A5C6N528_9TELE9.500e-836.78Reverse transcriptase domain-containing protein n=... [more]
UPI001FB7CC252.650e-732.26uncharacterized protein LOC125047580 n=1 Tax=Penae... [more]
A0A183TEZ8_SCHSO2.770e-735.48Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80982contigH-elongata_contig80982:4..282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size273
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931216.5529737-UTR-H-elongata_contig80982:3..91622931216.5529737-UTR-H-elongata_contig80982:3..9Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80982 4..9 +
1691679745.502281-UTR-H-elongata_contig80982:3..91691679745.502281-UTR-H-elongata_contig80982:3..9Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80982 4..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931216.5696757-CDS-H-elongata_contig80982:9..2821622931216.5696757-CDS-H-elongata_contig80982:9..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80982 10..282 +
1691679745.5110433-CDS-H-elongata_contig80982:9..2821691679745.5110433-CDS-H-elongata_contig80982:9..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80982 10..282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80982.15758.1prot_H-elongata_contig80982.15758.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80982 10..282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80982.15758.1

>prot_H-elongata_contig80982.15758.1 ID=prot_H-elongata_contig80982.15758.1|Name=mRNA_H-elongata_contig80982.15758.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIA
VTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML
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mRNA from alignment at H-elongata_contig80982:4..282+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80982.15758.1 ID=mRNA_H-elongata_contig80982.15758.1|Name=mRNA_H-elongata_contig80982.15758.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig80982:4..282+ (Himanthalia elongata Himel1 dioecious)
GGGCAAATGTACAGCCAAGTCGACACCTTTGCGTATCTTGGCAGCACCAT CAGCAGCGTTGGGGACGTCGGCCCTGAGATCAAACGCCGTGCTGGCTACG CCTGGAACTGCTTCCTCAAGTACAGCAGGGCGGTGTATGACAACCCATAC ATCGCAGTGACAGACAAGGTCCGTTTCCTGAAGGCGGAAGTACTCGAGGT CATGCTCTACGACTGTGTGACATGGACTCTTTCATCCGGCGACTTCGACA AGCTGCGGGAAGCCCACTGCAGAATGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig80982:4..282+

>mRNA_H-elongata_contig80982.15758.1 ID=mRNA_H-elongata_contig80982.15758.1|Name=mRNA_H-elongata_contig80982.15758.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig80982:4..282+ (Himanthalia elongata Himel1 dioecious)
ATGTACAGCCAAGTCGACACCTTTGCGTATCTTGGCAGCACCATCAGCAG
CGTTGGGGACGTCGGCCCTGAGATCAAACGCCGTGCTGGCTACGCCTGGA
ACTGCTTCCTCAAGTACAGCAGGGCGGTGTATGACAACCCATACATCGCA
GTGACAGACAAGGTCCGTTTCCTGAAGGCGGAAGTACTCGAGGTCATGCT
CTACGACTGTGTGACATGGACTCTTTCATCCGGCGACTTCGACAAGCTGC
GGGAAGCCCACTGCAGAATGCTGATGTACAGCCAAGTCGACACCTTTGCG
TATCTTGGCAGCACCATCAGCAGCGTTGGGGACGTCGGCCCTGAGATCAA
ACGCCGTGCTGGCTACGCCTGGAACTGCTTCCTCAAGTACAGCAGGGCGG
TGTATGACAACCCATACATCGCAGTGACAGACAAGGTCCGTTTCCTGAAG
GCGGAAGTACTCGAGGTCATGCTCTACGACTGTGTGACATGGACTCTTTC
ATCCGGCGACTTCGACAAGCTGCGGGAAGCCCACTGCAGAATGCTG
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