mRNA_H-elongata_contig80859.15743.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80859.15743.1
Unique NamemRNA_H-elongata_contig80859.15743.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80859.15743.1 vs. uniprot
Match: D7G385_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G385_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.420e-67
Identity = 217/510 (42.55%), Postives = 266/510 (52.16%), Query Frame = 1 
Query:    4 FPSDRRTCPPGIVLLLSVRSGDARRTTSLLRA-------------GVRPDATRDARGNTALHIAAAYGHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEARASSGQTPLRWALSLGRAET----ATALLQLGADPDAPDRLGACCLHAVAGFRSEGCSGVRSAFAHTSPFPAWSPAAMAELLLSFGASVN--QASGQA------RASFTPSLSEATTPEAGNGP-----ARDEGAG--DGVSRVSCAGETPLHIAARESSVWVAKLLLQSGSDPNAKTSAEEGGFSPLHSAAAPGCDNSRLVVRVLLEAGADIDVVAADGVTTPLRLACQNATVGCVEELLHWGAHDLSLAPPPRPPPGSHHVIALPSVGAHVEDGHPLSGVEEVAAYSSSSAAYDIDVSPFVPPPLAAVVGSRVPLSAKDVAEENYIRELLRKAPFERAWRRRGWLVMLYARAVLA 1437
            FPS  R C  G+VLLLSVRSGDA +T +LLR               + PDATRDARG+T+LH+A+ +  +                                                           XXXXXXXXXXXXXXXXXXXXXX                          A ALL+ GADPDAPDR GACCLH VA  +SE      SAFA T    +  P  MA+LLLS GA+ N  +A+G+A      R   + +L+  +  ++G+G         +G G   G    S A E+PLH+AARES+V VA+LLL  G+DPNAKT   EGG SPLH      C  SR +VR+LL AGADI VV+ADG+T+PL+LAC NA VGCV+ELL WGA DLS  P   PP      + L S+ +  E   P          S +SAA  I+V     P L  +VGSRVP S +D A+   I  +L +AP +RAWRRRGWLVMLYAR   A
Sbjct:    7 FPSCSRACSAGVVLLLSVRSGDAAKTRALLRRLPSSENSSDDRVPPLHPDATRDARGHTSLHVASIHDRSEIARLLIAAGASTESVVTSGANEGLTPLRLAAERGHLLTVRALLEAGADTTAEDVVDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEALLEAGADPDAPDRRGACCLHTVAALKSE--EDGSSAFAGTGEGSSL-PGDMAQLLLSAGANPNLGRAAGRAGRIHPGRTPSSTALTLGSINQSGSGDNSSAAGAHDGGGLWSGSGSESSASESPLHVAARESNVRVAELLLLHGADPNAKTPMREGGMSPLH------CAASRPIVRMLLAAGADISVVSADGLTSPLKLACLNAAVGCVKELLSWGADDLSCVPRSTPPS----TLLLSSLPSISETAPPC---PSSVPLSEASAAQRINV-----PRLGGLVGSRVPASVRDAADCEEIVRMLCQAPADRAWRRRGWLVMLYARTTAA 495
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BLAST of mRNA_H-elongata_contig80859.15743.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.450e-7
Identity = 69/211 (32.70%), Postives = 95/211 (45.02%), Query Frame = 1 
Query:  820 LHIAARESSVWVAKLLLQSGSDPNAKTSAEEGGFSPLHSAAAPGCDNSRLVVRVLLEAGADIDVVAADG---VTTPLRLACQNATVGCVEELLHWGAHDLSLAPPPRPPPGSHHVIALPSVGAHVEDGHPLSGVEEVAAYSSSSAAYDIDVSPFVPPPLAAVVGSRVPLSAKDVAEENY-IRELLRKAPFERAWRRRGWLVMLYARAVLAR 1440
            +++A +   V V K  L+ G D +++      G++ LH AA    DN    V VLLEAGAD DV +  G     TPL  A ++ +   +  LL  GA       P +P           S+  H+       GV EV        A +  V+     P  A V  R+ +   D  EE      LL +AP +RAWRRRGW+VML AR+   R
Sbjct:  171 INVATQLGHVGVIKAFLEHGVDASSQA-CPASGWTALHQAA---LDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGAD------PNKPDDNG-------SMPLHLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTP--AEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSETER 362
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BLAST of mRNA_H-elongata_contig80859.15743.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.420e-7
Identity = 55/190 (28.95%), Postives = 85/190 (44.74%), Query Frame = 1 
Query:  859 KLLLQSGSDPNAKTSAEEGGFSPLHSAAAPGCDNSRLV----VRVLLEAGADIDVVAADGVT-TPLRLACQNATVGCVEELLHWGAHDLSLAPPPRPPPGSHHVIALPSVGAHVEDGHPLSGVEEVAAYSSSSAAYDIDVSPFVPPPLAAVVGSRVPLSAKDVAEENYIRELLRKAPFERAWRRRGWLVM 1413
            ++LL++G+D +AKT+ +    +PLH A      N R+     +R LLE GA+++  A D    TPL +AC  ++V  VE LLHWGA +                  L  +      G  +   EE                   PP +    G          A+++ IR++L +AP +R+W RR WLV+
Sbjct:   42 RVLLEAGADVDAKTTGDGNCATPLHYAV-----NRRIAPIGAIRALLEGGANVN--ARDVFDQTPLHVACARSSVNGVEFLLHWGADE-----------------KLTDLDGETPAGAIVDSEEET------------------PPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVL 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80859.15743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G385_ECTSI1.420e-6742.55Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
D7FSI6_ECTSI2.450e-732.70Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5K6K9_9PHAE3.420e-728.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80859contigH-elongata_contig80859:1011..2525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.6
Seed ortholog evalue9.6e-62
Seed eggNOG ortholog2880.D7G385
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-03_004920.1
Exons2
Model size1452
Cds size1452
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931214.933645-CDS-H-elongata_contig80859:1010..13381622931214.933645-CDS-H-elongata_contig80859:1010..1338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80859 1011..1338 -
1691679744.8778517-CDS-H-elongata_contig80859:1010..13381691679744.8778517-CDS-H-elongata_contig80859:1010..1338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80859 1011..1338 -
1622931214.9680097-CDS-H-elongata_contig80859:1401..25251622931214.9680097-CDS-H-elongata_contig80859:1401..2525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80859 1402..2525 -
1691679744.8876438-CDS-H-elongata_contig80859:1401..25251691679744.8876438-CDS-H-elongata_contig80859:1401..2525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80859 1402..2525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80859.15743.1prot_H-elongata_contig80859.15743.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80859 1011..2525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80859.15743.1

>prot_H-elongata_contig80859.15743.1 ID=prot_H-elongata_contig80859.15743.1|Name=mRNA_H-elongata_contig80859.15743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=484bp
MFPSDRRTCPPGIVLLLSVRSGDARRTTSLLRAGVRPDATRDARGNTALH
IAAAYGHAEIARTLIEAGASTETLTPGDRFTPLRLAAERGHLCNVQVLLN
ASADMDAQDQLDRATPLHAAAEAGHTSVVRELARRGANLEARASSGQTPL
RWALSLGRAETATALLQLGADPDAPDRLGACCLHAVAGFRSEGCSGVRSA
FAHTSPFPAWSPAAMAELLLSFGASVNQASGQARASFTPSLSEATTPEAG
NGPARDEGAGDGVSRVSCAGETPLHIAARESSVWVAKLLLQSGSDPNAKT
SAEEGGFSPLHSAAAPGCDNSRLVVRVLLEAGADIDVVAADGVTTPLRLA
CQNATVGCVEELLHWGAHDLSLAPPPRPPPGSHHVIALPSVGAHVEDGHP
LSGVEEVAAYSSSSAAYDIDVSPFVPPPLAAVVGSRVPLSAKDVAEENYI
RELLRKAPFERAWRRRGWLVMLYARAVLARRDSS
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mRNA from alignment at H-elongata_contig80859:1011..2525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80859.15743.1 ID=mRNA_H-elongata_contig80859.15743.1|Name=mRNA_H-elongata_contig80859.15743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1515bp|location=Sequence derived from alignment at H-elongata_contig80859:1011..2525- (Himanthalia elongata Himel1 dioecious)
ATGTTCCCCTCCGACCGACGAACGTGTCCGCCTGGAATCGTCCTCCTGCT
GTCGGTAAGATCTGGGGATGCCCGCCGAACAACGAGCTTACTCCGGGCGG
GCGTCAGGCCCGATGCCACGAGGGATGCTCGTGGAAACACCGCCCTCCAC
ATCGCCGCTGCGTACGGGCACGCAGAAATCGCTCGTACTCTGATCGAGGC
CGGTGCATCCACCGAAACCCTTACCCCCGGCGACCGTTTTACGCCTCTCA
GGCTCGCAGCAGAGCGAGGACACCTCTGCAACGTCCAAGTCCTTCTTAAC
GCCTCGGCAGACATGGACGCCCAGGATCAGCTGGACCGCGCCACGCCCCT
CCACGCGGCGGCCGAAGCGGGACACACTTCTGTTGTTCGAGAGCTCGCCC
GGCGGGGAGCGAACCTCGAGGCTAGGGCATCTTCCGGCCAGACCCCGCTG
CGGTGGGCGCTGAGCCTCGGGCGCGCGGAAACTGCGACTGCGCTGCTGCA
GTTGGGTGCCGACCCTGACGCTCCCGATAGACTGGGTGCCTGCTGCCTCC
ATGCCGTCGCTGGATTTAGGTCAGAGGGCTGCAGTGGTGTCCGGTCGGCT
TTTGCCCATACGTCACCCTTTCCGGCGTGGTCGCCTGCGGCGATGGCGGA
GCTGCTGCTGTCCTTCGGGGCTTCAGTGAATCAAGCGAGTGGCCAGGCCC
GCGCCTCATTCACGCCATCCTTGTCAGAAGCTACAACGCCTGAGGCGGGC
AATGGCCCCGCGAGGGACGAAGGCGCTGGAGACGGCGTATCACGCGTTTC
CTGCGCGGGAGAAACTCCCCTTCACATCGCGGCGAGAGAGAGCTCGGTTT
GGGTAGCCAAGTTGTTGCTGCAGAGCGGGTCCGATCCTAATGCCAAGACA
TCTGCCGAAGAGGGCGGCTTTTCGCCCCTTCACTCTGCGGCTGCCCCGGG
CTGCGATAACAGTCGCCTGGTCGTGCGTGTGCTCTTGGAAGCCGGCGCTG
ACATTGACGTGGTCGCCGCAGATGGGGTCACCACCCCCCTCCGACTCGCG
TGTCAAAACGCTACGGTAGGATGCGTAGAGGAGTTGCTGCACTGGGGCGC
CCACGACCTCTCGCTTGCGCCCCCGTCCCCGAAGTTTCATTCCTTGCAGA
ACCCATCCCCGCCCGAGGAAGCGAATGTCTCCCATAGCCCTCGACCCCCA
CCTGGGTCTCATCATGTGATTGCTCTTCCGTCAGTTGGTGCTCATGTCGA
AGACGGTCATCCTCTCAGCGGTGTCGAAGAAGTCGCGGCATATTCGTCGT
CTTCCGCGGCTTACGATATTGACGTTTCACCTTTTGTGCCGCCCCCGTTA
GCCGCCGTGGTAGGCTCGCGCGTCCCTCTCTCGGCAAAAGATGTCGCCGA
GGAAAATTATATCCGAGAGCTCCTACGAAAAGCACCCTTTGAACGCGCGT
GGAGGCGCCGCGGTTGGCTGGTGATGCTGTATGCCAGGGCCGTGCTCGCG
CGAAGGGATTCCTCG
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Coding sequence (CDS) from alignment at H-elongata_contig80859:1011..2525-

>mRNA_H-elongata_contig80859.15743.1 ID=mRNA_H-elongata_contig80859.15743.1|Name=mRNA_H-elongata_contig80859.15743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2904bp|location=Sequence derived from alignment at H-elongata_contig80859:1011..2525- (Himanthalia elongata Himel1 dioecious)
ATGTTCCCCTCCGACCGACGAACGTGTCCGCCTGGAATCGTCCTCCTGCT
GTCGGTAAGATCTGGGGATGCCCGCCGAACAACGAGCTTACTCCGGGCGG
GCGTCAGGCCCGATGCCACGAGGGATGCTCGTGGAAACACCGCCCTCCAC
ATCGCCGCTGCGTACGGGCACGCAGAAATCGCTCGTACTCTGATCGAGGC
CGGTGCATCCACCGAAACCCTTACCCCCGGCGACCGTTTTACGCCTCTCA
GGCTCGCAGCAGAGCGAGGACACCTCTGCAACGTCCAAGTCCTTCTTAAC
GCCTCGGCAGACATGGACGCCCAGGATCAGCTGGACCGCGCCACGCCCCT
CCACGCGGCGGCCGAAGCGGGACACACTTCTGTTGTTCGAGAGCTCGCCC
GGCGGGGAGCGAACCTCGAGGCTAGGGCATCTTCCGGCCAGACCCCGCTG
CGGTGGGCGCTGAGCCTCGGGCGCGCGGAAACTGCGACTGCGCTGCTGCA
GTTGGGTGCCGACCCTGACGCTCCCGATAGACTGGGTGCCTGCTGCCTCC
ATGCCGTCGCTGGATTTAGGTCAGAGGGCTGCAGTGGTGTCCGGTCGGCT
TTTGCCCATACGTCACCCTTTCCGGCGTGGTCGCCTGCGGCGATGGCGGA
GCTGCTGCTGTCCTTCGGGGCTTCAGTGAATCAAGCGAGTGGCCAGGCCC
GCGCCTCATTCACGCCATCCTTGTCAGAAGCTACAACGCCTGAGGCGGGC
AATGGCCCCGCGAGGGACGAAGGCGCTGGAGACGGCGTATCACGCGTTTC
CTGCGCGGGAGAAACTCCCCTTCACATCGCGGCGAGAGAGAGCTCGGTTT
GGGTAGCCAAGTTGTTGCTGCAGAGCGGGTCCGATCCTAATGCCAAGACA
TCTGCCGAAGAGGGCGGCTTTTCGCCCCTTCACTCTGCGGCTGCCCCGGG
CTGCGATAACAGTCGCCTGGTCGTGCGTGTGCTCTTGGAAGCCGGCGCTG
ACATTGACGTGGTCGCCGCAGATGGGGTCACCACCCCCCTCCGACTCGCG
TGTCAAAACGCTACGGTAGGATGCGTAGAGGAGTTGCTGCACTGGGGCGC
CCACGACCTCTCGCTTGCGCCCCCATGTTCCCCTCCGACCGACGAACGTG
TCCGCCTGGAATCGTCCTCCTGCTGTCGGTAAGATCTGGGGATGCCCGCC
GAACAACGAGCTTACTCCGGGCGGGCGTCAGGCCCGATGCCACGAGGGAT
GCTCGTGGAAACACCGCCCTCCACATCGCCGCTGCGTACGGGCACGCAGA
AATCGCTCGTACTCTGATCGAGGCCGGTGCATCCACCGAAACCCTTACCC
CCGGCGACCGTTTTACGCCTCTCAGGCTCGCAGCAGAGCGAGGACACCTC
TGCAACGTCCAAGTCCTTCTTAACGCCTCGGCAGACATGGACGCCCAGGA
TCAGCTGGACCGCGCCACGCCCCTCCACGCGGCGGCCGAAGCGGGACACA
CTTCTGTTGTTCGAGAGCTCGCCCGGCGGGGAGCGAACCTCGAGGCTAGG
GCATCTTCCGGCCAGACCCCGCTGCGGTGGGCGCTGAGCCTCGGGCGCGC
GGAAACTGCGACTGCGCTGCTGCAGTTGGGTGCCGACCCTGACGCTCCCG
ATAGACTGGGTGCCTGCTGCCTCCATGCCGTCGCTGGATTTAGGTCAGAG
GGCTGCAGTGGTGTCCGGTCGGCTTTTGCCCATACGTCACCCTTTCCGGC
GTGGTCGCCTGCGGCGATGGCGGAGCTGCTGCTGTCCTTCGGGGCTTCAG
TGAATCAAGCGAGTGGCCAGGCCCGCGCCTCATTCACGCCATCCTTGTCA
GAAGCTACAACGCCTGAGGCGGGCAATGGCCCCGCGAGGGACGAAGGCGC
TGGAGACGGCGTATCACGCGTTTCCTGCGCGGGAGAAACTCCCCTTCACA
TCGCGGCGAGAGAGAGCTCGGTTTGGGTAGCCAAGTTGTTGCTGCAGAGC
GGGTCCGATCCTAATGCCAAGACATCTGCCGAAGAGGGCGGCTTTTCGCC
CCTTCACTCTGCGGCTGCCCCGGGCTGCGATAACAGTCGCCTGGTCGTGC
GTGTGCTCTTGGAAGCCGGCGCTGACATTGACGTGGTCGCCGCAGATGGG
GTCACCACCCCCCTCCGACTCGCGTGTCAAAACGCTACGGTAGGATGCGT
AGAGGAGTTGCTGCACTGGGGCGCCCACGACCTCTCGCTTGCGCCCCCCC
CTCGACCCCCACCTGGGTCTCATCATGTGATTGCTCTTCCGTCAGTTGGT
GCTCATGTCGAAGACGGTCATCCTCTCAGCGGTGTCGAAGAAGTCGCGGC
ATATTCGTCGTCTTCCGCGGCTTACGATATTGACGTTTCACCTTTTGTGC
CGCCCCCGTTAGCCGCCGTGGTAGGCTCGCGCGTCCCTCTCTCGGCAAAA
GATGTCGCCGAGGAAAATTATATCCGAGAGCTCCTACGAAAAGCACCCTT
TGAACGCGCGTGGAGGCGCCGCGGTTGGCTGGTGATGCTGTATGCCAGGG
CCGTGCTCGCGCGAAGGGATTCCTCGCCCTCGACCCCCACCTGGGTCTCA
TCATGTGATTGCTCTTCCGTCAGTTGGTGCTCATGTCGAAGACGGTCATC
CTCTCAGCGGTGTCGAAGAAGTCGCGGCATATTCGTCGTCTTCCGCGGCT
TACGATATTGACGTTTCACCTTTTGTGCCGCCCCCGTTAGCCGCCGTGGT
AGGCTCGCGCGTCCCTCTCTCGGCAAAAGATGTCGCCGAGGAAAATTATA
TCCGAGAGCTCCTACGAAAAGCACCCTTTGAACGCGCGTGGAGGCGCCGC
GGTTGGCTGGTGATGCTGTATGCCAGGGCCGTGCTCGCGCGAAGGGATTC
CTCG
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