mRNA_H-elongata_contig80783.15736.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80783.15736.1
Unique NamemRNA_H-elongata_contig80783.15736.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A8J6CJZ5_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CJZ5_9ROSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.440e-8
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   19 LDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 165
            +DV     N D+ +EV++Q  PG+V YD +G PFV +LKK++YGLRQ+P
Sbjct: 1148 VDVNNAFLNGDLDNEVFMQQPPGFVQYDSAGQPFVCRLKKALYGLRQAP 1196          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.530e-8
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    4 YDVLMLDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 165
            YDV  +DV      + +++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct:  429 YDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 483          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6P4PAH9_GOSAR (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4PAH9_GOSAR)

HSP 1 Score: 55.5 bits (132), Expect = 1.570e-7
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   19 LDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 165
            +DV     N D+  +V++Q  PG+V YD +G PFV +LKK++YGLRQ+P
Sbjct:   30 VDVNNAFLNGDLDTKVFMQQPPGFVQYDSTGQPFVCRLKKALYGLRQAP 78          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.840e-7
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    4 YDVLMLDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 165
            Y V  +DV      +++++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct:   97 YVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 151          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 4.080e-7
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    4 YDVLMLDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 165
            Y V  +DV      +++++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct:  993 YVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 1047          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.560e-7
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 DYDVLMLDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 165
            D DV+ LDV+     ADI++ V+V+MAPGY   +   +  VMKL+KS+ GL QSP
Sbjct:  404 DLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSP 458          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.380e-7
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    4 YDVLMLDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 165
            Y V  +DV      +++++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct:    9 YVVETMDVVTEFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 63          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A8J6D0Y5_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D0Y5_9ROSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.010e-6
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   10 VLMLDVQVVSR--------------NADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 165
            VL++DV +VS+              N D+  EV +Q + GYV Y   G PFV +LKK++YGLRQ+P
Sbjct:   36 VLLIDVMLVSKSWPLRQVNVNNSFLNGDLDSEVLMQQSSGYVQYGSDGKPFVCRLKKALYGLRQAP 101          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.940e-6
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    4 YDVLMLDVQVVSRNADIKDEVYVQMAPGYVTYDW-SGVPFVMKLKKSIYGLRQSP 165
            Y V  +DV    R ++++++VYV+ A GY T D  +G+P VMKLKKS+ GL+QSP
Sbjct:    9 YVVETMDVVTAFRQSNVEEDVYVRQAKGYETTDEVTGLPLVMKLKKSLNGLKQSP 63          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 3.650e-6
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    4 YDVLMLDVQVVSRNADIKDEVYVQMAPGYVTYDWS-GVPFVMKLKKSIYGLRQSP 165
            + V+ +DVQ    N  + ++VY   APG+   + S G P V KLKKS+YGLRQSP
Sbjct:  747 WPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSP 801          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A8J6CJZ5_9ROSI2.440e-851.02Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KCZ9_9PHAE4.530e-850.91Integrase catalytic domain-containing protein (Fra... [more]
A0A6P4PAH9_GOSAR1.570e-748.98uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6H5JVC8_9PHAE2.840e-749.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY84_9PHAE4.080e-749.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE5.560e-749.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFG1_9PHAE6.380e-749.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6D0Y5_9ROSI1.010e-642.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J897_9PHAE1.940e-649.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAG6_9PHAE3.650e-647.27Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80783contigH-elongata_contig80783:373..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size150
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931214.3388162-UTR-H-elongata_contig80783:372..3871622931214.3388162-UTR-H-elongata_contig80783:372..387Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80783 373..387 +
1691679744.651719-UTR-H-elongata_contig80783:372..3871691679744.651719-UTR-H-elongata_contig80783:372..387Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80783 373..387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931214.3526628-CDS-H-elongata_contig80783:387..5371622931214.3526628-CDS-H-elongata_contig80783:387..537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80783 388..537 +
1691679744.6613336-CDS-H-elongata_contig80783:387..5371691679744.6613336-CDS-H-elongata_contig80783:387..537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80783 388..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80783.15736.1prot_H-elongata_contig80783.15736.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80783 388..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80783.15736.1

>prot_H-elongata_contig80783.15736.1 ID=prot_H-elongata_contig80783.15736.1|Name=mRNA_H-elongata_contig80783.15736.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MLDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP
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mRNA from alignment at H-elongata_contig80783:373..537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80783.15736.1 ID=mRNA_H-elongata_contig80783.15736.1|Name=mRNA_H-elongata_contig80783.15736.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig80783:373..537+ (Himanthalia elongata Himel1 dioecious)
GACTACGACGTACTCATGCTGGACGTACAAGTAGTCTCCCGCAACGCTGA TATCAAGGATGAGGTCTACGTCCAAATGGCTCCCGGCTATGTGACCTACG ATTGGTCCGGAGTTCCCTTCGTCATGAAGCTCAAGAAGAGTATCTACGGT CTTCGACAGAGCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig80783:373..537+

>mRNA_H-elongata_contig80783.15736.1 ID=mRNA_H-elongata_contig80783.15736.1|Name=mRNA_H-elongata_contig80783.15736.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig80783:373..537+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGACGTACAAGTAGTCTCCCGCAACGCTGATATCAAGGATGAGGT
CTACGTCCAAATGGCTCCCGGCTATGTGACCTACGATTGGTCCGGAGTTC
CCTTCGTCATGAAGCTCAAGAAGAGTATCTACGGTCTTCGACAGAGCCCC
ATGCTGGACGTACAAGTAGTCTCCCGCAACGCTGATATCAAGGATGAGGT
CTACGTCCAAATGGCTCCCGGCTATGTGACCTACGATTGGTCCGGAGTTC
CCTTCGTCATGAAGCTCAAGAAGAGTATCTACGGTCTTCGACAGAGCCCC
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