mRNA_H-elongata_contig80625.15713.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80625.15713.1
Unique NamemRNA_H-elongata_contig80625.15713.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80625.15713.1 vs. uniprot
Match: D7FK14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK14_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 7.360e-6
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 APLLDGHVRSEILLGVTILKPVDDGGASRTEMTT 102
            APLLDGHVRSEILLGVTIL+P   G  +RTEMTT
Sbjct:  176 APLLDGHVRSEILLGVTILRPAK-GDPTRTEMTT 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80625.15713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK14_ECTSI7.360e-679.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80625contigH-elongata_contig80625:1717..2441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSTART-like domain
Ec32 orthologEc-18_002830.1
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.6018918-CDS-H-elongata_contig80625:1716..18381622931211.6018918-CDS-H-elongata_contig80625:1716..1838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80625 1717..1838 +
1691679743.4704828-CDS-H-elongata_contig80625:1716..18381691679743.4704828-CDS-H-elongata_contig80625:1716..1838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80625 1717..1838 +
1622931211.6172674-CDS-H-elongata_contig80625:2344..24411622931211.6172674-CDS-H-elongata_contig80625:2344..2441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80625 2345..2441 +
1691679743.480648-CDS-H-elongata_contig80625:2344..24411691679743.480648-CDS-H-elongata_contig80625:2344..2441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80625 2345..2441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80625.15713.1prot_H-elongata_contig80625.15713.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80625 1717..2441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80625.15713.1

>prot_H-elongata_contig80625.15713.1 ID=prot_H-elongata_contig80625.15713.1|Name=mRNA_H-elongata_contig80625.15713.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
APLLDGHVRSEILLGVTILKPVDDGGASRTEMTTVRCTRGRVSTKNAIDF
IQNVESAVNTATFSSSSCYSLSE
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mRNA from alignment at H-elongata_contig80625:1717..2441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80625.15713.1 ID=mRNA_H-elongata_contig80625.15713.1|Name=mRNA_H-elongata_contig80625.15713.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=725bp|location=Sequence derived from alignment at H-elongata_contig80625:1717..2441+ (Himanthalia elongata Himel1 dioecious)
GCGCCGTTACTAGATGGCCATGTAAGAAGCGAGATCCTCCTCGGGGTCAC
CATATTGAAACCAGTCGATGACGGGGGTGCTTCCAGGACGGAGATGACAA
CGGTGAGATGTACCCGTGGACGGTAACAAGGCTTGCGTTAGTCTCGAGTG
CATCACGGTGGGTGGTGCAGCCGTAGCTCTCGCGAAATATTTTTTGTGTG
GCGCACCCCGAGCACCGTATCGCCTACGCCATCGCTCCTTGCGTTTGACC
TCGCGGAACACGACACGTCGACCCTATACGTGAGCATCCACGGCACCCCT
CGAGAATAGAAAAAGTGATCGGTCTGGATTTTTTTGGGGGGGGGATATAA
GGGGAATGTTGTGACCTGGGCAGCGTCACTACCCCGCACGCGAAACTCAC
AAAATCGCCAAGGTATTTTTGTGCCTCAGCTTTACCGGAAGAATTTACCC
CCTGGAGGCGCCACAAGCGCCGCGCTTCAGCTGATGCCGATGAAACGAAA
AATTTGATGTTGCCCTGTACGTGACCACTGCTAACACTACCGCCCTCCCC
CCCCCCCCCCCCCACCGTTGCCCCCGCTCCGGTGCACCACCCCCTGTCCA
ATGCCGTCCCCGCTATTATCCCCGACAGAGTGTCGACGAAAAACGCAATA
GACTTTATACAAAACGTGGAGAGCGCGGTTAATACCGCTACCTTCTCCTC
GTCTTCGTGTTACTCTTTGAGCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig80625:1717..2441+

>mRNA_H-elongata_contig80625.15713.1 ID=mRNA_H-elongata_contig80625.15713.1|Name=mRNA_H-elongata_contig80625.15713.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig80625:1717..2441+ (Himanthalia elongata Himel1 dioecious)
GCGCCGTTACTAGATGGCCATGTAAGAAGCGAGATCCTCCTCGGGGTCAC
CATATTGAAACCAGTCGATGACGGGGGTGCTTCCAGGACGGAGATGACAA
CGGTGAGATGTACCCGTGGACGGCGCCGTTACTAGATGGCCATGTAAGAA
GCGAGATCCTCCTCGGGGTCACCATATTGAAACCAGTCGATGACGGGGGT
GCTTCCAGGACGGAGATGACAACGGTGAGATGTACCCGTGGACGAGTGTC
GACGAAAAACGCAATAGACTTTATACAAAACGTGGAGAGCGCGGTTAATA
CCGCTACCTTCTCCTCGTCTTCGTGTTACTCTTTGAGCGAGAGTGTCGAC
GAAAAACGCAATAGACTTTATACAAAACGTGGAGAGCGCGGTTAATACCG
CTACCTTCTCCTCGTCTTCGTGTTACTCTTTGAGCGAG
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