mRNA_H-elongata_contig80494.15699.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80494.15699.1
Unique NamemRNA_H-elongata_contig80494.15699.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80494.15699.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 4.880e-7
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   10 EAEALYERSQAIRERALGDDHPAVAESLNNRAVLLMEKVK 129
            EA  LYERS AIRE+ALG DHP VA+SLNN AVLL  +V+
Sbjct:  836 EAGKLYERSLAIREKALGPDHPDVAQSLNNWAVLLESQVR 875
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BLAST of mRNA_H-elongata_contig80494.15699.1 vs. uniprot
Match: A0A6H5L226_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L226_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-7
Identity = 27/35 (77.14%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   10 EAEALYERSQAIRERALGDDHPAVAESLNNRAVLL 114
            EAE LYERSQAIRE+ LG  HP VAE LNNRA LL
Sbjct:  371 EAEPLYERSQAIREKVLGPKHPDVAEVLNNRATLL 405
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BLAST of mRNA_H-elongata_contig80494.15699.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.940e-7
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 EAEALYERSQAIRERALGDDHPAVAESLNNRAVLLMEK 123
            EAE LYERSQAIRE+ LG +HP VA SLN+RA LL ++
Sbjct:   19 EAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLLCKQ 56
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BLAST of mRNA_H-elongata_contig80494.15699.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   10 EAEALYERSQAIRERALGDDHPAVAESLNNRAV 108
            EAE LYERSQAIRE+ LG +HP VA+SLNNR V
Sbjct:  296 EAEPLYERSQAIREKMLGPEHPDVAQSLNNRVV 328
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BLAST of mRNA_H-elongata_contig80494.15699.1 vs. uniprot
Match: A0A6H5JSR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR2_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.330e-6
Identity = 27/35 (77.14%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   10 EAEALYERSQAIRERALGDDHPAVAESLNNRAVLL 114
            EAE LYERSQAIRE+ALG  HP VA SLN RA LL
Sbjct:    4 EAEPLYERSQAIREKALGPKHPDVARSLNKRAWLL 38
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BLAST of mRNA_H-elongata_contig80494.15699.1 vs. uniprot
Match: D7G3B0_ECTSI (Tetratricopeptide repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B0_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 4.140e-6
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 EAEALYERSQAIRERALGDDHPAVAESLNNRAVLLMEK 123
            EAE LYERS+AIR++ L  DHP VA SLN+RA+LL +K
Sbjct:  211 EAEQLYERSEAIRDKTLDPDHPDVARSLNDRALLLDKK 248
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BLAST of mRNA_H-elongata_contig80494.15699.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.980e-6
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   10 EAEALYERSQAIRERALGDDHPAVAESLNNRAVL 111
            EA  LYERS AIRE+ LG DHP VA+SLNNRA+L
Sbjct:  803 EAGPLYERSLAIREKVLGPDHPDVAQSLNNRALL 836
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BLAST of mRNA_H-elongata_contig80494.15699.1 vs. uniprot
Match: UPI00037F2BFA (tetratricopeptide repeat protein n=1 Tax=Thiofilum flexile TaxID=125627 RepID=UPI00037F2BFA)

HSP 1 Score: 47.8 bits (112), Expect = 6.210e-6
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   22 LYERSQAIRERALGDDHPAVAESLNNRAVL 111
            LYERS AIRE+ALG DHP VA SLNN AVL
Sbjct:    4 LYERSLAIREQALGKDHPEVATSLNNLAVL 33
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BLAST of mRNA_H-elongata_contig80494.15699.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 8.220e-6
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   10 EAEALYERSQAIRERALGDDHPAVAESLNNRAVL 111
            +AE LYERS AIRE+ LG +HP VA+SLNNR +L
Sbjct:   21 DAEQLYERSLAIREKVLGPEHPDVAQSLNNRELL 54
[Close]
BLAST of mRNA_H-elongata_contig80494.15699.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.020e-5
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   10 EAEALYERSQAIRERALGDDHPAVAESLNNRAVLLMEKVKLS 135
            EA+ LYERSQAIR++ LG DHP VA  LNNRA LL  K+ LS
Sbjct:  210 EAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLL--KILLS 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80494.15699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K4D0_9PHAE4.880e-770.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L226_9PHAE6.670e-777.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK1_9PHAE8.940e-768.42Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KIY6_9PHAE1.710e-675.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSR2_9PHAE2.330e-677.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3B0_ECTSI4.140e-665.79Tetratricopeptide repeat protein n=1 Tax=Ectocarpu... [more]
A0A6H5JJK0_9PHAE5.980e-673.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00037F2BFA6.210e-680.00tetratricopeptide repeat protein n=1 Tax=Thiofilum... [more]
A0A6H5K8Z8_9PHAE8.220e-667.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5H9_9PHAE1.020e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80494contigH-elongata_contig80494:497..631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.501805-CDS-H-elongata_contig80494:496..6311622931210.501805-CDS-H-elongata_contig80494:496..631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80494 497..631 -
1691679743.0373232-CDS-H-elongata_contig80494:496..6311691679743.0373232-CDS-H-elongata_contig80494:496..631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80494 497..631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80494.15699.1prot_H-elongata_contig80494.15699.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80494 497..631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80494.15699.1

>prot_H-elongata_contig80494.15699.1 ID=prot_H-elongata_contig80494.15699.1|Name=mRNA_H-elongata_contig80494.15699.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
EDPEAEALYERSQAIRERALGDDHPAVAESLNNRAVLLMEKVKLS
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mRNA from alignment at H-elongata_contig80494:497..631-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80494.15699.1 ID=mRNA_H-elongata_contig80494.15699.1|Name=mRNA_H-elongata_contig80494.15699.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig80494:497..631- (Himanthalia elongata Himel1 dioecious)
GAAGACCCCGAGGCGGAAGCGCTCTACGAGAGATCGCAGGCTATTCGAGA
ACGTGCTTTGGGCGACGATCACCCCGCCGTGGCGGAGTCGCTGAACAACC
GAGCGGTTCTGTTGATGGAAAAGGTGAAGCTAAGT
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Coding sequence (CDS) from alignment at H-elongata_contig80494:497..631-

>mRNA_H-elongata_contig80494.15699.1 ID=mRNA_H-elongata_contig80494.15699.1|Name=mRNA_H-elongata_contig80494.15699.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig80494:497..631- (Himanthalia elongata Himel1 dioecious)
GAAGACCCCGAGGCGGAAGCGCTCTACGAGAGATCGCAGGCTATTCGAGA
ACGTGCTTTGGGCGACGATCACCCCGCCGTGGCGGAGTCGCTGAACAACC
GAGCGGTTCTGTTGATGGAAAAGGTGAAGCTAAGTGAAGACCCCGAGGCG
GAAGCGCTCTACGAGAGATCGCAGGCTATTCGAGAACGTGCTTTGGGCGA
CGATCACCCCGCCGTGGCGGAGTCGCTGAACAACCGAGCGGTTCTGTTGA
TGGAAAAGGTGAAGCTAAGT
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