mRNA_H-elongata_contig7998.15651.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7998.15651.1
Unique NamemRNA_H-elongata_contig7998.15651.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7998.15651.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 7.050e-35
Identity = 130/425 (30.59%), Postives = 193/425 (45.41%), Query Frame = 1
Query:    4 EFWANDSGATEHMTQDPAGLEDYTPAPAGNRVESAGGTLLPVAGYGHLRLRVDQGNDNFTDSTRQLTLKHVAHVPNLGQHNILSTKRLTQFFDPPMRVYPAAAVIRPRRGGMPLLFRPLRPENGLLEIKVRRHVAAKSRLPKPQTAAVLAA-TQRGP-----WDIMKFHQVLRHPAEQITRNTVRMACVKSSGIWRPCVHCSESRVWRYAVPKSTENRADRRTGRLFIDLSGPFHDASFGGNRFVMLCIDDFTHFKMVRFLKHKSDATNALRDIINDYLA---PKSLKI------------GFLSFLSKLGIKRESTPPYTPQHNGVVERVLGLLRDKTVA-------LLRGVMEGKRDRLWVEAMAYACDIRNRCAFSSLDSGTSPYELRYGRRPTFDNIPPFGTLGYLRRSKLGHKLVPRGRA 1194
            E W  D+G   HMT   A ++D  P      V   GG    ++  G L L     +  F+     + LK+V + PNLG +N+ S     +F             +     G  + F+     +G+L       +A+  RL +     VLAA T   P      D+ +FH +  H  + + R T +    +  G    C  CS ++  +  + + T++R+D++ GR+F+DL G    AS GG  + M+  DDFT    + FLKHKSDA  A R  +    A   P  ++I             F S  ++L IK+E TP Y+PQ+NGV ER LGL+ +  +A       L   V   K D+LW EAM +AC+  N  A S+     SPYE+ YG  P      PF    Y R  +   KL+P+G +
Sbjct:  523 EDWYADTGTAFHMTDSLACMKDLKPCH--KSVNGIGGVSCEISFSGTLELVFVTADSEFS-----MELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFKGQ-VTFQNF---DGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGES 924          
BLAST of mRNA_H-elongata_contig7998.15651.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 9.820e-35
Identity = 130/425 (30.59%), Postives = 193/425 (45.41%), Query Frame = 1
Query:    4 EFWANDSGATEHMTQDPAGLEDYTPAPAGNRVESAGGTLLPVAGYGHLRLRVDQGNDNFTDSTRQLTLKHVAHVPNLGQHNILSTKRLTQFFDPPMRVYPAAAVIRPRRGGMPLLFRPLRPENGLLEIKVRRHVAAKSRLPKPQTAAVLAA-TQRGP-----WDIMKFHQVLRHPAEQITRNTVRMACVKSSGIWRPCVHCSESRVWRYAVPKSTENRADRRTGRLFIDLSGPFHDASFGGNRFVMLCIDDFTHFKMVRFLKHKSDATNALRDIINDYLA---PKSLKI------------GFLSFLSKLGIKRESTPPYTPQHNGVVERVLGLLRDKTVA-------LLRGVMEGKRDRLWVEAMAYACDIRNRCAFSSLDSGTSPYELRYGRRPTFDNIPPFGTLGYLRRSKLGHKLVPRGRA 1194
            E W  D+G   HMT   A ++D  P      V   GG    ++  G L L     +  F+     + LK+V + PNLG +N+ S     +F             +     G  + F+     +G+L       +A+  RL +     VLAA T   P      D+ +FH +  H  + + R T +    +  G    C  CS ++  +  + + T++R+D++ GR+F+DL G    AS GG  + M+  DDFT    + FLKHKSDA  A R  +    A   P  ++I             F S  ++L IK+E TP Y+PQ+NGV ER LGL+ +  +A       L   V   K D+LW EAM +AC+  N  A S+     SPYE+ YG  P      PF    Y R  +   KL+P+G +
Sbjct:  230 EDWYADTGTAFHMTDSLACMKDLKPCH--KSVNGIGGVSCEISFSGTLELVFVTADSEFS-----VELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFKGQ-VTFQNF---DGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGES 631          
BLAST of mRNA_H-elongata_contig7998.15651.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.010e-34
Identity = 101/292 (34.59%), Postives = 143/292 (48.97%), Query Frame = 1
Query:  403 VAAKSRLPKPQTAAVLAA-TQRGP-----WDIMKFHQVLRHPAEQITRNTVRMACVKSSGIWRPCVHCSESRVWRYAVPKSTENRADRRTGRLFIDLSGPFHDASFGGNRFVMLCIDDFTHFKMVRFLKHKSDATNALRDIINDYLA---PKSLKI------------GFLSFLSKLGIKRESTPPYTPQHNGVVERVLGLLRDKTVA-------LLRGVMEGKRDRLWVEAMAYACDIRNRCAFSSLDSGTSPYELRYGRRPTFDNIPPFGTLGYLRRSKLGHKLVPRGRA 1194
            +A+  RL +     VLAA T   P      DI +FH +  H  E + R T +    K  G    C  CS S+  R  + + T+ R+D++ GR+F DL G    AS GG  + ++  DDFT    + FL++KSDA +A R  +    A   P  ++I             F S  ++L IK+E TP Y+PQ+NGV ER LGL+ +  +A       L   V   K D+LW EAM +AC+  N  A S+     SPYE+ YG  P      PF    Y R  +   KL+P+G +
Sbjct:    3 IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGES 292          
BLAST of mRNA_H-elongata_contig7998.15651.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.760e-34
Identity = 136/427 (31.85%), Postives = 191/427 (44.73%), Query Frame = 1
Query:    4 EFWANDSGATEHMTQDPAGLEDYTPAPAGNRVESAGGTLLPVAGYGHLRLRVDQGNDNFTDSTRQLTLKHVAHVPNLGQHNILSTKRLTQFFDPPMRVYPAAAVIRPRRGGMPLLFRPLRPEN--GLLEIKVRRHVAAKSRLPKPQTAAVLAA-TQRGP-----WDIMKFHQVLRHPAEQITRNTVRMACVKSSGIWRPCVHCSESRVWRYAVPKSTENRADRRTGRLFIDLSGPFHDASFGGNRFVMLCIDDFTHFKMVRFLKHKSDATNALRDIINDYLA---PKSLKI------------GFLSFLSKLGIKRESTPPYTPQHNGVVERVLGLLRDKTVA-------LLRGVMEGKRDRLWVEAMAYACDIRNRCAFSSLDSGTSPYELRYGRRPTFDNIPPFGTLGYLRRSKLGHKLVPRGRA 1194
            E W  D+G   HMT   + ++D  P      V   G     VA  G L L     +  F+     + LK+V +  NLG +NI S    +  FD      P         G M      +  +N  G+L       +A+  RL +     VLAA T   P      DI +FH +  H  E + R T +    K  G    C  CS S+  R  + + T+ R+D++ GR+F+DL G    AS GG  + M+  DDFT    + FLK++SDA  A R  +    A   P  ++I             F S  ++L IK+E TP Y+PQ+NGV ER LGL+ +  +A       L   V   K D+LW EAM +AC+  N  A S+     SPYE+ YG  P      PF    Y R  +   KL+P+G +
Sbjct:  111 EDWYADTGTAFHMTDSLSCMKDLKPCH--KSVNGIGSVSCEVAFSGTLELVFVTADSEFS-----VELKNVLYSQNLG-YNIFSP---SAEFDGESWNGPGGP-----DGVMTAFNGQVTFQNFDGML-------IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGES 512          
BLAST of mRNA_H-elongata_contig7998.15651.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.480e-33
Identity = 132/427 (30.91%), Postives = 195/427 (45.67%), Query Frame = 1
Query:    4 EFWANDSGATEHMTQDPAGLEDYTPAPAGNRVESAGGTLLPVAGYGHLRLRVDQGNDNFTDSTRQLTLKHVAHVPNLGQHNILSTKRLTQFFDPPMRVYPAA--AVIRPRRGGMPLLFRPLRPENGLLEIKVRRHVAAKSRLPKPQTAAVLAA-TQRGP-----WDIMKFHQVLRHPAEQITRNTVRMACVKSSGIWRPCVHCSESRVWRYAVPKSTENRADRRTGRLFIDLSGPFHDASFGGNRFVMLCIDDFTHFKMVRFLKHKSDATNALRDIINDYLA---PKSLKI------------GFLSFLSKLGIKRESTPPYTPQHNGVVERVLGLLRDKTVA-------LLRGVMEGKRDRLWVEAMAYACDIRNRCAFSSLDSGTSPYELRYGRRPTFDNIPPFGTLGYLRRSKLGHKLVPRGRA 1194
            E W  D+G   HMT   + ++D  P      V+  GG    +   G L L     +  F      + L++V + PNLG +N+ S    +  FD     Y      V+    G +   F+ L   +G+L       ++   RL      +VLAA T   P      D+ +FH +  H  E + R T +   ++ +G    C  CS S+ ++  +   T+ R+D++ GR+F+DL G    AS GG  + M+  DDFT    + FLK KSDA +A R  +    A   P  ++I             F S  ++L IK+E TP Y+PQ+NGV ER LGL+    +A       L   V   K DRLW EAM +AC+  N  A S+     SPYE+ +G   +     PF    Y R  +   KL+P+G A
Sbjct:  429 EDWYADTGTAFHMTDRLSCMKDLKPCH--KNVKGIGGVTCEIEFSGTLELVFVTADSQFP-----VELENVLYSPNLG-YNLFSP---SAEFDGESWNYLGGPDGVMTAFNGHV--TFQNL---DGML-------ISPAYRLENNCVGSVLAALTPSNPKHESKMDVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRPS-KLLPKGEA 830          
BLAST of mRNA_H-elongata_contig7998.15651.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 4.550e-32
Identity = 101/292 (34.59%), Postives = 143/292 (48.97%), Query Frame = 1
Query:  403 VAAKSRLPKPQTAAVLAA-TQRGP-----WDIMKFHQVLRHPAEQITRNTVRMACVKSSGIWRPCVHCSESRVWRYAVPKSTENRADRRTGRLFIDLSGPFHDASFGGNRFVMLCIDDFTHFKMVRFLKHKSDATNALRDIINDYLA---PKSLKI------------GFLSFLSKLGIKRESTPPYTPQHNGVVERVLGLLRDKTVA-------LLRGVMEGKRDRLWVEAMAYACDIRNRCAFSSLDSGTSPYELRYGRRPTFDNIPPFGTLGYLRRSKLGHKLVPRGRA 1194
            +A+  RL +     VLAA T   P      DI +FH +  H  E + R T +    K  G    C  CS S+  R  + + T+ R+D++ GR+F+DL G    AS GG  + M+  DDFT    + FL++KSDA +A R  +    A   P  ++I             F S  ++L IK+E TP Y+PQ+NGV ER LGL+ +  +A       L   V   K D+LW EAM +AC+  N  A S+      PYE+ YG  P      PF    Y R  +   KL+P+G +
Sbjct:  101 IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGES 390          
BLAST of mRNA_H-elongata_contig7998.15651.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 8.640e-32
Identity = 102/292 (34.93%), Postives = 143/292 (48.97%), Query Frame = 1
Query:  403 VAAKSRLPKPQTAAVLAA-TQRGP-----WDIMKFHQVLRHPAEQITRNTVRMACVKSSGIWRPCVHCSESRVWRYAVPKSTENRADRRTGRLFIDLSGPFHDASFGGNRFVMLCIDDFTHFKMVRFLKHKSDATNALRDIINDYLA---PKSLKI------------GFLSFLSKLGIKRESTPPYTPQHNGVVERVLGLLRDKTVA-------LLRGVMEGKRDRLWVEAMAYACDIRNRCAFSSLDSGTSPYELRYGRRPTFDNIPPFGTLGYLRRSKLGHKLVPRGRA 1194
            +A+  RL +     VLAA T   P      DI +FH +  H  E + R T +    K  G    C  CS S+  R  +   T+ R+D++ GR+F+DL G    AS GG  + M+  DDFT    + FL++KSDA +A R  +    A   P  ++I             F S  ++L IK+E TP Y+PQ+NGV ER LGL+ +  +A       L   V   K D+LW EAM +AC+  N  A S+     SPYE+ YG  P      PF    Y R  +   KL+P+G +
Sbjct:  156 IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGES 445          
BLAST of mRNA_H-elongata_contig7998.15651.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.830e-31
Identity = 129/426 (30.28%), Postives = 192/426 (45.07%), Query Frame = 1
Query:    4 EFWANDSGATEHMTQDPAGLEDYTPAPAGNRVESAGGTLLPVAGYGHLRLRVDQGNDNFTDSTRQLTLKHVAHVPNLGQHNILSTKRLTQFFDPPMRVYPAAAVIRPRRGGMPLLFRPLRPENGLLEIKVRRHVAAKSRLPKPQTAAVLAA-TQRGP-----WDIMKFHQVLRHPAEQITRNTVRMACVKSSGIWRPCVHCSESRVWRYAVPKSTENRADRRTGRLFIDLSGPFHDASFGGNRFVMLCIDDFTHFKMVRFLKHKSDATNALRDIINDYLA---PKSLKI------------GFLSFLSKLGIKRESTPPYTPQHNGVVERVLGLLRDKTVA-------LLRGVMEGKRDRLWVEAMAYACDIRNRCAFSSLDSGTSPYELRYGR-RPTFDNIPPFGTLGYLRRSKLGHKLVPRGRA 1194
            E W  D+G   +MT   + ++D  P    N+V+  GG    VA  G L +     +  F+       LK+V + P LG +N+ S     +F             +     G  + F+     +G+L       VA   RL      +VLAA T   P      D+  FH +  H  E + R T +   ++ +G    C  CS  +  R A+   T N +D++ GR+F++L G    AS GG  + M+  DDFT    + FL+ KSDA +A R  + +  A   P  ++I             F S  ++L IK+E TP ++P+ NGV ER LGL+ +  +A       L   V   K DRLW EAM +AC+  N  A S+     SPYE+ YG  RP      PF    Y +  +   KL+P+G +
Sbjct:  250 EDWYADTGTAFNMTDSLSCMKDVNPCH--NKVKGIGGVTCEVALSGTLEVAFVSADSEFSAE-----LKNVLYAPKLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFHGH-VTFQNF---DGML-------VATAYRLGHNSIGSVLAALTPSNPKRVKIMDVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPA--RPYPFLKPAYCKWQRPS-KLLPKGES 651          
BLAST of mRNA_H-elongata_contig7998.15651.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 134 bits (337), Expect = 1.100e-28
Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 3
Query: 1608 EPTTMGEAQASSEWPQWKRAIARKMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKCRLVAQGFRQVKGKHYEKSPSPTPAQVSIRMVLSIIKALGWEARQLDVDMAYLEADVEEEIYVELPEAYHDSRKKVVLLKKAMYGLVHAGLLW 2084
            EP ++ EAQAS EWP+W++A+  + D     G W++ + PK +  +G + VF+RK +K+G++ KYK RLVAQG+ Q+ G  + ++ +P     SIR +L++     WE  Q+DV  AYL  D++EEIY+  PE + D   ++  L+K +YGL  +G  W
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREW 1064          
BLAST of mRNA_H-elongata_contig7998.15651.1 vs. uniprot
Match: A0A177U0B1_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U0B1_9BASI)

HSP 1 Score: 127 bits (319), Expect = 3.210e-27
Identity = 68/184 (36.96%), Postives = 107/184 (58.15%), Query Frame = 3
Query: 1539 SCTRSGKGFVQDDPIIALFGLDPEPTTMGEAQ--ASSEWPQWKRAIARKMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKCRLVAQGFRQVKGKHYEKSPSPTPAQVSIRMVLSIIKALGWEARQLDVDMAYLEADVEEEIYVELPEAYHDSRKKVVLLKKAMYGLVHAGLLW 2084
            +CT +  G   D       G   EP  + +A+   S+EW QWK+A+  ++   T  G W +VE   G  ++G+R V+K K+D+DG   +YK RLVAQGF Q +G  ++++ +P    V++R+V+S+  ALG     +D+  AYL   + EE+Y++ P  Y D   +V LL++A+YGL  AG  W
Sbjct:    6 ACTAAAHGTSAD-------GSPLEPVNLKQAKNRPSAEWAQWKQAMDEEVASLTEMGTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAYLNGKLHEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAW 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7998.15651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBA7_9PHAE7.050e-3530.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE9.820e-3530.59Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVR5_9PHAE1.010e-3434.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE1.760e-3431.85Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K2M6_9PHAE3.480e-3330.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE4.550e-3234.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRL9_9PHAE8.640e-3234.93Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JH25_9PHAE2.830e-3130.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A401GYH9_9APHY1.100e-2839.62Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A177U0B1_9BASI3.210e-2736.96Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7998contigH-elongata_contig7998:5964..8309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score106.3
Seed ortholog evalue3.3e-20
Seed eggNOG ortholog3712.Bo1g005190.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size2084
Cds size1173
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7998.15651.1prot_H-elongata_contig7998.15651.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7998 7059..8270 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931205.08621-UTR-H-elongata_contig7998:5963..64491622931205.08621-UTR-H-elongata_contig7998:5963..6449Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 5964..6449 -
1691679740.843383-UTR-H-elongata_contig7998:5963..64491691679740.843383-UTR-H-elongata_contig7998:5963..6449Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 5964..6449 -
1622931205.1025429-UTR-H-elongata_contig7998:6542..66581622931205.1025429-UTR-H-elongata_contig7998:6542..6658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 6543..6658 -
1691679740.8654573-UTR-H-elongata_contig7998:6542..66581691679740.8654573-UTR-H-elongata_contig7998:6542..6658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 6543..6658 -
1622931205.1712282-UTR-H-elongata_contig7998:6788..70581622931205.1712282-UTR-H-elongata_contig7998:6788..7058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 6789..7058 -
1691679740.8812113-UTR-H-elongata_contig7998:6788..70581691679740.8812113-UTR-H-elongata_contig7998:6788..7058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 6789..7058 -
1622931205.225792-UTR-H-elongata_contig7998:8270..83091622931205.225792-UTR-H-elongata_contig7998:8270..8309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 8271..8309 -
1691679740.9252305-UTR-H-elongata_contig7998:8270..83091691679740.9252305-UTR-H-elongata_contig7998:8270..8309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7998 8271..8309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931205.1923463-CDS-H-elongata_contig7998:7058..74241622931205.1923463-CDS-H-elongata_contig7998:7058..7424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7998 7059..7424 -
1691679740.9010737-CDS-H-elongata_contig7998:7058..74241691679740.9010737-CDS-H-elongata_contig7998:7058..7424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7998 7059..7424 -
1622931205.2092876-CDS-H-elongata_contig7998:7463..82701622931205.2092876-CDS-H-elongata_contig7998:7463..8270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7998 7464..8270 -
1691679740.9114292-CDS-H-elongata_contig7998:7463..82701691679740.9114292-CDS-H-elongata_contig7998:7463..8270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7998 7464..8270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7998.15651.1

>prot_H-elongata_contig7998.15651.1 ID=prot_H-elongata_contig7998.15651.1|Name=mRNA_H-elongata_contig7998.15651.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=391bp
MTQDPAGLEDYTPAPAGNRVESAGGTLLPVAGYGHLRLRVDQGNDNFTDS
TRQLTLKHVAHVPNLGQHNILSTKRLTQFFDPPMRVYPAAAVIRPRRGGM
PLLFRPLRPENGLLEIKVRRHVAAKSRLPKPQTAAVLAATQRGPWDIMKF
HQVLRHPAEQITRNTVRMACVKSSGIWRPCVHCSESRVWRYAVPKSTENR
ADRRTGRLFIDLSGPFHDASFGGNRFVMLCIDDFTHFKMVRFLKHKSDAT
NALRDIINDYLAPKSLKIGFLSFLSKLGIKRESTPPYTPQHNGVVERVLG
LLRDKTVALLRGVMEGKRDRLWVEAMAYACDIRNRCAFSSLDSGTSPYEL
RYGRRPTFDNIPPFGTLGYLRRSKLGHKLVPRGRAASCSR*
back to top

mRNA from alignment at H-elongata_contig7998:5964..8309-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7998.15651.1 ID=mRNA_H-elongata_contig7998.15651.1|Name=mRNA_H-elongata_contig7998.15651.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2346bp|location=Sequence derived from alignment at H-elongata_contig7998:5964..8309- (Himanthalia elongata Himel1 dioecious)
AGCGAATTCTGGGCGAACGATAGCGGTGCGACAGAGCATATGACCCAAGA CCCGGCGGGTCTAGAGGATTACACGCCGGCACCCGCGGGAAATCGAGTGG AGAGCGCAGGCGGTACCCTCCTTCCGGTGGCGGGATATGGACATCTCCGC CTGCGTGTGGATCAAGGCAACGACAACTTCACCGACTCGACGCGCCAGCT CACGCTAAAGCACGTCGCACATGTGCCGAATCTTGGACAGCATAATATTC TCTCTACGAAACGGCTGACGCAGTTTTTCGACCCGCCGATGCGCGTCTAC CCAGCGGCGGCAGTGATCCGCCCCCGGCGAGGGGGCATGCCACTCTTATT CCGCCCACTTCGACCAGAAAACGGCCTTTTAGAGATCAAGGTGCGCCGCC ACGTCGCTGCGAAGAGCCGCCTACCCAAACCCCAAACAGCAGCAGTGCTC GCGGCGACGCAGCGTGGCCCGTGGGATATCATGAAGTTCCACCAGGTACT GAGGCACCCGGCAGAGCAGATCACGCGCAACACGGTCCGTATGGCGTGCG TGAAATCAAGCGGAATTTGGCGACCATGCGTACACTGCTCCGAATCTAGG GTGTGGCGATACGCCGTGCCTAAATCCACGGAGAATCGGGCTGACAGGCG CACGGGACGGTTGTTTATTGACCTCTCAGGCCCTTTTCACGACGCTTCTT TCGGGGGAAACAGATTCGTCATGCTGTGCATTGACGACTTCACCCACTTC AAAATGGTCCGTTTCCTCAAGCACAAGAGCGACGCCACGAATGCGTTAAG GGACATAATCAACGACTACCTCGCGCCCAAGAGCCTCAAGATCGGCGTCA TCTGCACGGGCGGTGGGGGAGAATGACACTGCCAGTTCCTGTCTTTCCTA AGTAAGCTCGGAATCAAGCGCGAGTCCACACCTCCATATACCCCCCAACA CAATGGCGTCGTGGAGCGCGTTTTGGGGCTACTGCGCGACAAGACCGTGG CGCTGCTGCGAGGTGTAATGGAGGGTAAGCGCGACCGTCTATGGGTGGAA GCTATGGCGTACGCATGCGATATACGGAACCGATGCGCCTTCTCATCCCT CGACAGCGGCACCTCGCCATATGAGCTTCGGTACGGCCGACGTCCGACAT TCGACAACATCCCCCCATTCGGGACCTTGGGATATCTACGACGGTCGAAG CTGGGGCACAAACTAGTCCCCCGCGGGCGAGCTGCATCATGCTCGCGCTG ACCCTCGACTACCAGCGGGACACTTGCCGGGTGCGTGACCTCACCACACG CCAGATCCTCAACCGCCAAGTCGTCACCTGGCACCCCCCGACCGGGGGGA AGAGGAACACGCCCCTTTCCGCACCATCCAGGACCACATATAGGCGCCTC CCCGTGCGTCGCACGAAAACTACGGGCTATACGTCAACATCAAGCACCTT GGAAGTTGTACCAGAACAACCGGAGGAAGAGACGCCTAAAATCCAACCGC GGGACGACCTGTCGGAGCGGAGTGTGCCGGCCGATGATGCGTCCGAATCA GGTAAGTTGAAGGACGACGAACCGGAACGGGGTGATTTCGATTACGAGCC GGAGGGGGGTAGAAGAAAAAGAGTTAAGCGGCACCGCCCAGAAGGTACCA GCTTCTGTGCGACAACTCTACAACTCCTTCACCGGCGAGCCGCACCCTTC GCCCAGGAGCTGCACGAGGAGTGGAAAAGGCTTTGTCCAGGACGACCCAA TCATCGCCCTCTTTGGGGTGGGTTATAGCGTCAATACACTGCCATCCCTG ATGCGCGCACCCTGCGGTACCCTCGGCGAGGGTGTCCCGACATGCGGGTC CACGAGGCAGCTAGACCCAGAGCCGACAACCATGGGCGAGGCGCAAGCGT CGTCGGAGTGGCCGCAATGGAAAAGGGCGATCGCGCGCAAGATGGATGGG CAAACTGCTCGAGGCGTGTGGCAGGTGGTGGAGCGTCCAAAAGGGAAGAC GGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAAAATCGACAAGGATGGAA GGATCAAGAAGTATAAATGTCGTCTTGTGGCGCAGGGTTTCAGACAGGTC AAAGGCAAACACTACGAGAAATCACCCTCTCCGACTCCTGCGCAGGTCAG CATTCGGATGGTACTCAGCATAATCAAGGCTCTCGGCTGGGAGGCGCGGC AGCTGGACGTCGATATGGCCTACCTGGAGGCCGATGTGGAGGAGGAGATC TACGTTGAGCTCCCGGAGGCATACCATGACTCCAGGAAGAAAGTCGTCCT ACTAAAGAAGGCAATGTACGGACTCGTCCACGCCGGGCTGCTGTGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7998:5964..8309-

>mRNA_H-elongata_contig7998.15651.1 ID=mRNA_H-elongata_contig7998.15651.1|Name=mRNA_H-elongata_contig7998.15651.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2346bp|location=Sequence derived from alignment at H-elongata_contig7998:5964..8309- (Himanthalia elongata Himel1 dioecious)
ATGACCCAAGACCCGGCGGGTCTAGAGGATTACACGCCGGCACCCGCGGG
AAATCGAGTGGAGAGCGCAGGCGGTACCCTCCTTCCGGTGGCGGGATATG
GACATCTCCGCCTGCGTGTGGATCAAGGCAACGACAACTTCACCGACTCG
ACGCGCCAGCTCACGCTAAAGCACGTCGCACATGTGCCGAATCTTGGACA
GCATAATATTCTCTCTACGAAACGGCTGACGCAGTTTTTCGACCCGCCGA
TGCGCGTCTACCCAGCGGCGGCAGTGATCCGCCCCCGGCGAGGGGGCATG
CCACTCTTATTCCGCCCACTTCGACCAGAAAACGGCCTTTTAGAGATCAA
GGTGCGCCGCCACGTCGCTGCGAAGAGCCGCCTACCCAAACCCCAAACAG
CAGCAGTGCTCGCGGCGACGCAGCGTGGCCCGTGGGATATCATGAAGTTC
CACCAGGTACTGAGGCACCCGGCAGAGCAGATCACGCGCAACACGGTCCG
TATGGCGTGCGTGAAATCAAGCGGAATTTGGCGACCATGCGTACACTGCT
CCGAATCTAGGGTGTGGCGATACGCCGTGCCTAAATCCACGGAGAATCGG
GCTGACAGGCGCACGGGACGGTTGTTTATTGACCTCTCAGGCCCTTTTCA
CGACGCTTCTTTCGGGGGAAACAGATTCGTCATGCTGTGCATTGACGACT
TCACCCACTTCAAAATGGTCCGTTTCCTCAAGCACAAGAGCGACGCCACG
AATGCGTTAAGGGACATAATCAACGACTACCTCGCGCCCAAGAGCCTCAA
GATCGGCATGACCCAAGACCCGGCGGGTCTAGAGGATTACACGCCGGCAC
CCGCGGGAAATCGAGTGGAGAGCGCAGGCGGTACCCTCCTTCCGGTGGCG
GGATATGGACATCTCCGCCTGCGTGTGGATCAAGGCAACGACAACTTCAC
CGACTCGACGCGCCAGCTCACGCTAAAGCACGTCGCACATGTGCCGAATC
TTGGACAGCATAATATTCTCTCTACGAAACGGCTGACGCAGTTTTTCGAC
CCGCCGATGCGCGTCTACCCAGCGGCGGCAGTGATCCGCCCCCGGCGAGG
GGGCATGCCACTCTTATTCCGCCCACTTCGACCAGAAAACGGCCTTTTAG
AGATCAAGGTGCGCCGCCACGTCGCTGCGAAGAGCCGCCTACCCAAACCC
CAAACAGCAGCAGTGCTCGCGGCGACGCAGCGTGGCCCGTGGGATATCAT
GAAGTTCCACCAGGTACTGAGGCACCCGGCAGAGCAGATCACGCGCAACA
CGGTCCGTATGGCGTGCGTGAAATCAAGCGGAATTTGGCGACCATGCGTA
CACTGCTCCGAATCTAGGGTGTGGCGATACGCCGTGCCTAAATCCACGGA
GAATCGGGCTGACAGGCGCACGGGACGGTTGTTTATTGACCTCTCAGGCC
CTTTTCACGACGCTTCTTTCGGGGGAAACAGATTCGTCATGCTGTGCATT
GACGACTTCACCCACTTCAAAATGGTCCGTTTCCTCAAGCACAAGAGCGA
CGCCACGAATGCGTTAAGGGACATAATCAACGACTACCTCGCGCCCAAGA
GCCTCAAGATCGGCTTCCTGTCTTTCCTAAGTAAGCTCGGAATCAAGCGC
GAGTCCACACCTCCATATACCCCCCAACACAATGGCGTCGTGGAGCGCGT
TTTGGGGCTACTGCGCGACAAGACCGTGGCGCTGCTGCGAGGTGTAATGG
AGGGTAAGCGCGACCGTCTATGGGTGGAAGCTATGGCGTACGCATGCGAT
ATACGGAACCGATGCGCCTTCTCATCCCTCGACAGCGGCACCTCGCCATA
TGAGCTTCGGTACGGCCGACGTCCGACATTCGACAACATCCCCCCATTCG
GGACCTTGGGATATCTACGACGGTCGAAGCTGGGGCACAAACTAGTCCCC
CGCGGGCGAGCTGCATCATGCTCGCGCTGATTCCTGTCTTTCCTAAGTAA
GCTCGGAATCAAGCGCGAGTCCACACCTCCATATACCCCCCAACACAATG
GCGTCGTGGAGCGCGTTTTGGGGCTACTGCGCGACAAGACCGTGGCGCTG
CTGCGAGGTGTAATGGAGGGTAAGCGCGACCGTCTATGGGTGGAAGCTAT
GGCGTACGCATGCGATATACGGAACCGATGCGCCTTCTCATCCCTCGACA
GCGGCACCTCGCCATATGAGCTTCGGTACGGCCGACGTCCGACATTCGAC
AACATCCCCCCATTCGGGACCTTGGGATATCTACGACGGTCGAAGCTGGG
GCACAAACTAGTCCCCCGCGGGCGAGCTGCATCATGCTCGCGCTGA
back to top