mRNA_H-elongata_contig79761.15629.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: D8LIM3_ECTSI (ClpS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIM3_ECTSI) HSP 1 Score: 154 bits (389), Expect = 1.360e-45 Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 1
Query: 22 ENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREGA 270
E+APM+ VL++GDEEYNREHVVMSIQDIVPDTDNT+AAEIFEEAQE GKG CGTYPEEEAELYVEQFTRCEPIIYADME+EGA
Sbjct: 120 EDAPMFQVLVIGDEEYNREHVVMSIQDIVPDTDNTRAAEIFEEAQEGGKGFCGTYPEEEAELYVEQFTRCEPIIYADMEKEGA 202
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A836C8I8_9STRA (ClpS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8I8_9STRA) HSP 1 Score: 135 bits (340), Expect = 5.990e-39 Identity = 62/87 (71.26%), Postives = 76/87 (87.36%), Query Frame = 1
Query: 4 KRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMERE 264
+R T++E+ PMY VLLLGDE Y REHV+M+IQDI+P+TDN K+ EIFEEAQ++G GMCG +PEE AELYV+QFTRCEP+IYADME E
Sbjct: 64 RRVTESEDCPMYKVLLLGDEGYEREHVIMAIQDIIPETDNKKSTEIFEEAQKTGTGMCGVFPEEHAELYVQQFTRCEPMIYADMEEE 150
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A7R9Z7A9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z7A9_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.270e-21 Identity = 42/89 (47.19%), Postives = 64/89 (71.91%), Query Frame = 1
Query: 1 TKRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREG 267
++R + E+AP+Y ++LLGDEEY++ HV+ + ++ D D +A+ IF++AQ SGK MCG YP E AE+Y EQ R +P+IY+D+E E
Sbjct: 36 SRRDEKFEDAPLYKLMLLGDEEYDQAHVIERMCALLEDMDEDQASTIFDQAQISGKAMCGKYPYEHAEMYKEQLARSDPMIYSDLEEEN 124
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A7S2PG26_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PG26_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 6.890e-20 Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 4 KRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMERE 264
+R +TE+AP+Y V+L+GDEEY++ H + I DI+ D D +AA +F +AQ GK M YP E AELYVEQ R +P+I+++++ E
Sbjct: 98 RREHKTEDAPLYKVMLIGDEEYDQTHTIERICDIMEDVDEGQAASVFTQAQNGGKAMIAKYPFEHAELYVEQLLRSDPMIFSELQEE 184
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A7S0AH38_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AH38_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.410e-19 Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 4 KRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREG 267
+R + E+APMY ++LLGDEEY+ HVV + I+ D D A+ I +AQ +GK MCG YP E AE+Y EQ R +PIIY+D+E E
Sbjct: 86 RRDEEFEDAPMYRLMLLGDEEYDIVHVVERMCAILDDMDEDAASTILNQAQIAGKAMCGKYPFEHAEMYKEQLARSDPIIYSDLEEEN 173
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A7R9WV01_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WV01_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 4.360e-18 Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 1 TKRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREG 267
++R + E+APM+ ++LLGD+ Y+ HVV + IV D D +AAE+ ++A +GK MCG YP E AEL+ EQ R +P+I++D+E E
Sbjct: 86 SRRKDEFEDAPMFKLMLLGDDGYDAMHVVDRLCAIVDDIDEGQAAEVLQQANMAGKAMCGKYPFERAELFKEQLLRSDPMIFSDLEEEN 174
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A1Z5J9C8_FISSO (ClpS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9C8_FISSO) HSP 1 Score: 80.5 bits (197), Expect = 3.890e-17 Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 22 ENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREGA 270
++APMY V+LL DE+Y++EHVV + I+ D D +AA ++++A +G+ MCG YP E AEL+ EQ R +P+I+ D+ E A
Sbjct: 83 QDAPMYKVMLLRDEDYDQEHVVTRLCAILDDMDEDQAATVWKQAMAAGQAMCGKYPFERAELFKEQLLRSDPMIFCDLVEENA 165
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A448Z4M9_9STRA (ClpS domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4M9_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.100e-16 Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
Query: 1 TKRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREG 267
++R E APMY ++LLGD+ Y+ EHVV + IV D D +A + A SG+ MCG YP E+AELY EQ R +P+IY+D+ E
Sbjct: 76 SRREEIFEEAPMYKLMLLGDDSYDVEHVVERLCAIVDDMDEDQAQSVLLMAGPSGEAMCGKYPMEKAELYKEQLIRSDPMIYSDIRNEN 164
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A1E7F5M5_9STRA (ClpS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5M5_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 4.770e-16 Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1
Query: 1 TKRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREG 267
++R + APMY ++LLGDE Y+ HV+ + IV D D +A + ++A+ SG+ MCG YP E+AEL+ EQ R +P+IY++++ E
Sbjct: 80 SRRDEEFMEAPMYKLMLLGDESYDAVHVMERMCAIVDDMDEDQATTVIQQAKSSGEAMCGKYPFEKAELFKEQLIRSDPMIYSEIKEEN 168
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A7S3B617_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B617_9EUKA) HSP 1 Score: 75.9 bits (185), Expect = 1.630e-15 Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 1
Query: 4 KRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTK-AAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMERE 264
K TE+ P++NV LLGDEEY ++ V + +IVPD N + AAE +EEA+++GK + T P+E E YVEQ R +P++YA++++E
Sbjct: 60 KLKRNTEDIPLWNVFLLGDEEYEQDPVCEVLLNIVPDIANLRQAAEKYEEAEKTGKALLITVPKELGEAYVEQLIRADPMVYAEIKQE 147 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79761.15629.1 >prot_H-elongata_contig79761.15629.1 ID=prot_H-elongata_contig79761.15629.1|Name=mRNA_H-elongata_contig79761.15629.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp TKRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEback to top mRNA from alignment at H-elongata_contig79761:1102..1965- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79761.15629.1 ID=mRNA_H-elongata_contig79761.15629.1|Name=mRNA_H-elongata_contig79761.15629.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=864bp|location=Sequence derived from alignment at H-elongata_contig79761:1102..1965- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79761:1102..1965- >mRNA_H-elongata_contig79761.15629.1 ID=mRNA_H-elongata_contig79761.15629.1|Name=mRNA_H-elongata_contig79761.15629.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig79761:1102..1965- (Himanthalia elongata Himel1 dioecious)back to top |