mRNA_H-elongata_contig79761.15629.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79761.15629.1
Unique NamemRNA_H-elongata_contig79761.15629.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: D8LIM3_ECTSI (ClpS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIM3_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.360e-45
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 1
Query:   22 ENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREGA 270
            E+APM+ VL++GDEEYNREHVVMSIQDIVPDTDNT+AAEIFEEAQE GKG CGTYPEEEAELYVEQFTRCEPIIYADME+EGA
Sbjct:  120 EDAPMFQVLVIGDEEYNREHVVMSIQDIVPDTDNTRAAEIFEEAQEGGKGFCGTYPEEEAELYVEQFTRCEPIIYADMEKEGA 202          
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A836C8I8_9STRA (ClpS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8I8_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.990e-39
Identity = 62/87 (71.26%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    4 KRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMERE 264
            +R T++E+ PMY VLLLGDE Y REHV+M+IQDI+P+TDN K+ EIFEEAQ++G GMCG +PEE AELYV+QFTRCEP+IYADME E
Sbjct:   64 RRVTESEDCPMYKVLLLGDEGYEREHVIMAIQDIIPETDNKKSTEIFEEAQKTGTGMCGVFPEEHAELYVQQFTRCEPMIYADMEEE 150          
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A7R9Z7A9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z7A9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.270e-21
Identity = 42/89 (47.19%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 TKRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREG 267
            ++R  + E+AP+Y ++LLGDEEY++ HV+  +  ++ D D  +A+ IF++AQ SGK MCG YP E AE+Y EQ  R +P+IY+D+E E 
Sbjct:   36 SRRDEKFEDAPLYKLMLLGDEEYDQAHVIERMCALLEDMDEDQASTIFDQAQISGKAMCGKYPYEHAEMYKEQLARSDPMIYSDLEEEN 124          
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A7S2PG26_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PG26_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.890e-20
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    4 KRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMERE 264
            +R  +TE+AP+Y V+L+GDEEY++ H +  I DI+ D D  +AA +F +AQ  GK M   YP E AELYVEQ  R +P+I+++++ E
Sbjct:   98 RREHKTEDAPLYKVMLIGDEEYDQTHTIERICDIMEDVDEGQAASVFTQAQNGGKAMIAKYPFEHAELYVEQLLRSDPMIFSELQEE 184          
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A7S0AH38_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AH38_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.410e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    4 KRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREG 267
            +R  + E+APMY ++LLGDEEY+  HVV  +  I+ D D   A+ I  +AQ +GK MCG YP E AE+Y EQ  R +PIIY+D+E E 
Sbjct:   86 RRDEEFEDAPMYRLMLLGDEEYDIVHVVERMCAILDDMDEDAASTILNQAQIAGKAMCGKYPFEHAEMYKEQLARSDPIIYSDLEEEN 173          
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A7R9WV01_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WV01_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.360e-18
Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 TKRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREG 267
            ++R  + E+APM+ ++LLGD+ Y+  HVV  +  IV D D  +AAE+ ++A  +GK MCG YP E AEL+ EQ  R +P+I++D+E E 
Sbjct:   86 SRRKDEFEDAPMFKLMLLGDDGYDAMHVVDRLCAIVDDIDEGQAAEVLQQANMAGKAMCGKYPFERAELFKEQLLRSDPMIFSDLEEEN 174          
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A1Z5J9C8_FISSO (ClpS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9C8_FISSO)

HSP 1 Score: 80.5 bits (197), Expect = 3.890e-17
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   22 ENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREGA 270
            ++APMY V+LL DE+Y++EHVV  +  I+ D D  +AA ++++A  +G+ MCG YP E AEL+ EQ  R +P+I+ D+  E A
Sbjct:   83 QDAPMYKVMLLRDEDYDQEHVVTRLCAILDDMDEDQAATVWKQAMAAGQAMCGKYPFERAELFKEQLLRSDPMIFCDLVEENA 165          
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A448Z4M9_9STRA (ClpS domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4M9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.100e-16
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 TKRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREG 267
            ++R    E APMY ++LLGD+ Y+ EHVV  +  IV D D  +A  +   A  SG+ MCG YP E+AELY EQ  R +P+IY+D+  E 
Sbjct:   76 SRREEIFEEAPMYKLMLLGDDSYDVEHVVERLCAIVDDMDEDQAQSVLLMAGPSGEAMCGKYPMEKAELYKEQLIRSDPMIYSDIRNEN 164          
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A1E7F5M5_9STRA (ClpS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5M5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.770e-16
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    1 TKRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREG 267
            ++R  +   APMY ++LLGDE Y+  HV+  +  IV D D  +A  + ++A+ SG+ MCG YP E+AEL+ EQ  R +P+IY++++ E 
Sbjct:   80 SRRDEEFMEAPMYKLMLLGDESYDAVHVMERMCAIVDDMDEDQATTVIQQAKSSGEAMCGKYPFEKAELFKEQLIRSDPMIYSEIKEEN 168          
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Match: A0A7S3B617_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B617_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 1.630e-15
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    4 KRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTK-AAEIFEEAQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMERE 264
            K    TE+ P++NV LLGDEEY ++ V   + +IVPD  N + AAE +EEA+++GK +  T P+E  E YVEQ  R +P++YA++++E
Sbjct:   60 KLKRNTEDIPLWNVFLLGDEEYEQDPVCEVLLNIVPDIANLRQAAEKYEEAEKTGKALLITVPKELGEAYVEQLIRADPMVYAEIKQE 147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79761.15629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LIM3_ECTSI1.360e-4589.16ClpS domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836C8I8_9STRA5.990e-3971.26ClpS domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7R9Z7A9_9STRA1.270e-2147.19Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2PG26_9STRA6.890e-2047.13Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0AH38_9STRA1.410e-1950.00Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7R9WV01_9STRA4.360e-1844.94Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1Z5J9C8_FISSO3.890e-1745.78ClpS domain-containing protein n=2 Tax=Fistulifera... [more]
A0A448Z4M9_9STRA1.100e-1646.07ClpS domain-containing protein n=1 Tax=Pseudo-nitz... [more]
A0A1E7F5M5_9STRA4.770e-1641.57ClpS domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S3B617_9EUKA1.630e-1545.45Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79761contigH-elongata_contig79761:1102..1965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue8.3e-36
Seed eggNOG ortholog2880.D8LIM3
EggNOG free text desc.ATP-dependent Clp protease adaptor protein ClpS
EggNOG OGs2CHM4@1,2SC6E@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
Ec32 orthologEc-11_004380.1
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931202.574774-CDS-H-elongata_contig79761:1101..12421622931202.574774-CDS-H-elongata_contig79761:1101..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79761 1102..1242 -
1691679739.7662442-CDS-H-elongata_contig79761:1101..12421691679739.7662442-CDS-H-elongata_contig79761:1101..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79761 1102..1242 -
1622931202.5915759-CDS-H-elongata_contig79761:1836..19651622931202.5915759-CDS-H-elongata_contig79761:1836..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79761 1837..1965 -
1691679739.7785265-CDS-H-elongata_contig79761:1836..19651691679739.7785265-CDS-H-elongata_contig79761:1836..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79761 1837..1965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79761.15629.1prot_H-elongata_contig79761.15629.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79761 1102..1965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79761.15629.1

>prot_H-elongata_contig79761.15629.1 ID=prot_H-elongata_contig79761.15629.1|Name=mRNA_H-elongata_contig79761.15629.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
TKRATQTENAPMYNVLLLGDEEYNREHVVMSIQDIVPDTDNTKAAEIFEE
AQESGKGMCGTYPEEEAELYVEQFTRCEPIIYADMEREGA
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mRNA from alignment at H-elongata_contig79761:1102..1965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79761.15629.1 ID=mRNA_H-elongata_contig79761.15629.1|Name=mRNA_H-elongata_contig79761.15629.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=864bp|location=Sequence derived from alignment at H-elongata_contig79761:1102..1965- (Himanthalia elongata Himel1 dioecious)
ACGAAACGCGCAACGCAGACGGAAAACGCACCGATGTACAACGTGCTCCT GCTCGGAGACGAAGAATATAACCGAGAACACGTCGTAATGTCCATCCAGG ACATCGTTCCCGACACCGATAACACGAAGGTAGGTAGGGAGGAGGTACCA ACGGTACACGCCTCAAAATCGTTCGCTCTTCTCATTACCACATTGGTTTC GTAAGTACTTTCTAGGACCGCATATATTCCCGTAATACATACAACCCTAT GCTATACTGTAGATGTGTTGAATATATTTAAGGATGTCGCGGCGGGGCTC GTAACCTCGCGCCAACGATGCTGTCTGCTGCTCCTGCTGTTTTGCCTTTT TCCCACCGAGCGGGCCATTTTCTTAGTCTTTGATGCCGAACAGTTCGTCA AAAAGCAATCTTGGGGGCTGTCACACTCGTCTCGCTACTGAACGTCAAAA TTTGATACGGTCATATTTGGGAAGCGAAATCAGAAAAAAAAACACATACA ACCTACTGCCTCCACTGCCACGACATTCCTCATCTGACCGGCGGGTTTCC ATCAACATACATTTGTAATATGTTTTTAATAAAGAAGAGAAAAATGCCTG CTTTTGTTTGAAAAAAACCCTATTTAGTCTTTCTTCCTTCCTTCCTTCCT TACGTCTGCAGCCTTTACCCCGCCTACGCGATCTTACTCGCGACTCTTCT TCCCCTGTCCGGAAAATACGCAGGCCGCGGAGATTTTTGAGGAGGCGCAA GAGTCCGGCAAGGGCATGTGCGGCACGTACCCGGAAGAGGAGGCCGAGCT GTACGTGGAGCAGTTTACGAGGTGCGAGCCCATTATCTACGCGGACATGG AGCGAGAAGGCGCT
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Coding sequence (CDS) from alignment at H-elongata_contig79761:1102..1965-

>mRNA_H-elongata_contig79761.15629.1 ID=mRNA_H-elongata_contig79761.15629.1|Name=mRNA_H-elongata_contig79761.15629.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig79761:1102..1965- (Himanthalia elongata Himel1 dioecious)
ACGAAACGCGCAACGCAGACGGAAAACGCACCGATGTACAACGTGCTCCT
GCTCGGAGACGAAGAATATAACCGAGAACACGTCGTAATGTCCATCCAGG
ACATCGTTCCCGACACCGATAACACGAAGACGAAACGCGCAACGCAGACG
GAAAACGCACCGATGTACAACGTGCTCCTGCTCGGAGACGAAGAATATAA
CCGAGAACACGTCGTAATGTCCATCCAGGACATCGTTCCCGACACCGATA
ACACGAAGGCCGCGGAGATTTTTGAGGAGGCGCAAGAGTCCGGCAAGGGC
ATGTGCGGCACGTACCCGGAAGAGGAGGCCGAGCTGTACGTGGAGCAGTT
TACGAGGTGCGAGCCCATTATCTACGCGGACATGGAGCGAGAAGGCGCTG
CCGCGGAGATTTTTGAGGAGGCGCAAGAGTCCGGCAAGGGCATGTGCGGC
ACGTACCCGGAAGAGGAGGCCGAGCTGTACGTGGAGCAGTTTACGAGGTG
CGAGCCCATTATCTACGCGGACATGGAGCGAGAAGGCGCT
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