mRNA_H-elongata_contig7950.15604.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7950.15604.1
Unique NamemRNA_H-elongata_contig7950.15604.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7950.15604.1 vs. uniprot
Match: D8LBS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS2_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.190e-20
Identity = 61/91 (67.03%), Postives = 67/91 (73.63%), Query Frame = 3 
Query:  846 DLMTGRPTKAVVQFELQRHEAQKASTSRAACDTTLEALAERNLADAGEVNGDMRKALRHLREYRALAQRGRNAALEADACRRLSSMYAEIA 1118
            DLMTGRP +A  +FELQ  EAQ A       D  LEALAERNLAD  EV+ D+  AL HLR  RALAQR RN+ALEADACRRLSS+YAEIA
Sbjct:  216 DLMTGRPVQAAERFELQLKEAQNAG------DPILEALAERNLADTREVDEDLPGALAHLRRCRALAQRSRNSALEADACRRLSSVYAEIA 300
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BLAST of mRNA_H-elongata_contig7950.15604.1 vs. uniprot
Match: A0A6H5KC12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC12_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.700e-16
Identity = 79/219 (36.07%), Postives = 110/219 (50.23%), Query Frame = 3 
Query:  270 QTAAEEAAMIFAAGAKAR---VPPAQRARCAILEGVAWSLAGRSSTNGA-------------------AALTRADQIVENLRERE-KRPV--------------SPDGRVVPELVPDIVGSSVSAGNESDGQPSMLQLGLVCIKGLMVRGGLGLGFACTTGTVTTEVKTARGNA-------GVRAAAAANWASARKANSGWAKAALLVKKQLDYAAQVS 794
            +TAAE+AA + AAG KA      P Q+   A+LEG+AWSLAG+ S  GA                   AA+ RA++ +E   + E +RP               S D   +     + VG SV AG+E+  Q + LQLG++  +GL+ RGG G+G A +T  V     +A+  A       G  A  AA   +A+ AN+GWA+A  L KKQL YA + S
Sbjct:   81 RTAAEKAAGLIAAGCKAGDLGAHPTQKMNGAMLEGLAWSLAGQGSAEGASLLFRGFVVGRRGEIGERAAAMKRAERGLEKFLDSEHRRPSVAASAAGVAKRSASSADDVPLSARAQEAVGVSVPAGSENSDQITALQLGVLGTQGLVARGGFGMGAAFSTSAVAMGSVSAKARAAVVGDAAGALAVVAAARTAAKAANAGWAEAGSLAKKQLTYATKAS 299
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7950.15604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBS2_ECTSI2.190e-2067.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC12_9PHAE1.700e-1636.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7950contigH-elongata_contig7950:241..2880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_002910.1
Exons6
Model size1118
Cds size825
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931199.57495-CDS-H-elongata_contig7950:240..4261622931199.57495-CDS-H-elongata_contig7950:240..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 241..426 -
1691679738.3946114-CDS-H-elongata_contig7950:240..4261691679738.3946114-CDS-H-elongata_contig7950:240..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 241..426 -
1622931199.5911767-CDS-H-elongata_contig7950:658..8071622931199.5911767-CDS-H-elongata_contig7950:658..807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 659..807 -
1691679738.4049788-CDS-H-elongata_contig7950:658..8071691679738.4049788-CDS-H-elongata_contig7950:658..807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 659..807 -
1622931199.6040277-CDS-H-elongata_contig7950:1347..15671622931199.6040277-CDS-H-elongata_contig7950:1347..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 1348..1567 -
1691679738.413255-CDS-H-elongata_contig7950:1347..15671691679738.413255-CDS-H-elongata_contig7950:1347..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 1348..1567 -
1622931199.6174667-CDS-H-elongata_contig7950:1883..20421622931199.6174667-CDS-H-elongata_contig7950:1883..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 1884..2042 -
1691679738.4234352-CDS-H-elongata_contig7950:1883..20421691679738.4234352-CDS-H-elongata_contig7950:1883..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 1884..2042 -
1622931199.6315498-CDS-H-elongata_contig7950:2421..25321622931199.6315498-CDS-H-elongata_contig7950:2421..2532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 2422..2532 -
1691679738.4331355-CDS-H-elongata_contig7950:2421..25321691679738.4331355-CDS-H-elongata_contig7950:2421..2532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7950 2422..2532 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931199.6436856-UTR-H-elongata_contig7950:2532..26751622931199.6436856-UTR-H-elongata_contig7950:2532..2675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7950 2533..2675 -
1691679738.4430375-UTR-H-elongata_contig7950:2532..26751691679738.4430375-UTR-H-elongata_contig7950:2532..2675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7950 2533..2675 -
1622931199.6615398-UTR-H-elongata_contig7950:2730..28801622931199.6615398-UTR-H-elongata_contig7950:2730..2880Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7950 2731..2880 -
1691679738.4531934-UTR-H-elongata_contig7950:2730..28801691679738.4531934-UTR-H-elongata_contig7950:2730..2880Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7950 2731..2880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7950.15604.1prot_H-elongata_contig7950.15604.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7950 241..2532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7950.15604.1

>prot_H-elongata_contig7950.15604.1 ID=prot_H-elongata_contig7950.15604.1|Name=mRNA_H-elongata_contig7950.15604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=275bp
MIFAAGAKARVPPAQRARCAILEGVAWSLAGRSSTNGAAALTRADQIVEN
LREREKRPVSPDGRVVPELVPDIVGSSVSAGNESDGQPSMLQLGLVCIKG
LMVRGGLGLGFACTTGTVTTEVKTARGNAGVRAAAAANWASARKANSGWA
KAALLVKKQLDYAAQVSTDSAHQLSVAHAHAGAIDLMTGRPTKAVVQFEL
QRHEAQKASTSRAACDTTLEALAERNLADAGEVNGDMRKALRHLREYRAL
AQRGRNAALEADACRRLSSMYAEIA
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mRNA from alignment at H-elongata_contig7950:241..2880-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7950.15604.1 ID=mRNA_H-elongata_contig7950.15604.1|Name=mRNA_H-elongata_contig7950.15604.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2640bp|location=Sequence derived from alignment at H-elongata_contig7950:241..2880- (Himanthalia elongata Himel1 dioecious)
TCGTCTGGGGTGAGGAAGAGCGACCTAGCCAAGTGGGCCGCGCTCGCGAT
CGAAGTGGCGAACTCAAAAGGACTGTGTACGTTACAGGAGGGCGCGAGAG
GATTTAGGATACAGGAGACTGCGGTCGACCTCGACGCGGGCGGTGCCGCT
GTACAGCCGCAGGATCAAAGGGTCGTCAGAGTCGAGAGAAATGAATTAAG
AAGAGATGAGCGCGACTGCGACGGTGACCACGATGTCGACCTCGATCACG
ACAATGACGGTAAGGACGGGAGAACGGAAAGAGGAAGGGGAAGTGCGAAC
GCAAAAGAGACAGGTCGACAAGCACAGACTGCGGCGGAAGAGGCGGCGAT
GATCTTCGCGGCCGGGGCCAAAGCACGCGTACCACCCGCGCAGAGAGCAC
GCTGCGCGATCTTGGAGGGCGTCGCGTGGTCGCTGGCCGGACGGAGCAGC
ACAAACGGGGTGGGTCGAAGTTTCGTTCGTGGGCAAGGCTTGGTCGCTAC
TGGTCTATATTTTTGCTCAAGGCGCTTCAGGGACGAATGAAATATCATGG
TCAGCGCAAGTGAAACCCTGTGGCGTAATTGCAGCGTCCACGGTGACCAA
CGTGCGGCTCCAAAAAAAAAAGAAAAAGCTTACGCTCGTCGACTACAACT
GCAACCGGCAGTCGACTTGTCCATAAGCGAAGGCTTCTGCTAGTTTGGTT
GCTCTCCGAAAGGAAGTTTCAGTACGGAGCTAGCGCGAATTGTATCTTGT
TTGACTGACTTCTGAAATCTCGTGCGGTCAACATCGTCATTGAACTGCTC
CGTGTGCGCGCGATTGGGGGCCGTGTTTTGTTCTCCAGGCTGCGGCTCTA
ACGCGAGCGGATCAGATAGTGGAGAATTTACGGGAACGCGAGAAGCGACC
GGTATCACCCGACGGTAGGGTTGTGCCGGAGCTGGTGCCAGATATCGTTG
GCTCGAGCGTCTCCGCAGGCAACGAGAGCGATGGCCAGCCGAGCATGGTG
TGTTTTATGAAAGATTGGCATTCCGTCTGCTCGTTCTCTGCACAACGTTT
ACCGTCGAAAACTAAGCGCACGCCCTCTCCTCATTTTCCGCTTGGGAGTT
TGCCTCCTTGAAGGAGGGGGAAATCACGACGAAAAGTTTGATCACCACCC
TACAAAATTGGCGCGCACTATGATGTGGCACAAAGAGCGGGATCGTGCGC
ATCATTGCACGAGTCGTGTACGACGTTTACCCCGTCCCGGTCAGAAACGA
AAGGAAAAATCGCGCGTTTGCCGTCTACTAAACCGTCTACCTTATACCGC
CTCTTTTCTGCAGCTACAGCTTGGATTGGTCTGTATCAAGGGGTTAATGG
TGAGGGGGGGGCTGGGATTGGGTTTTGCCTGTACCACCGGCACCGTGACG
ACTGAAGTAAAAACCGCTCGGGGTAATGCGGGAGTACGCGCTGCAGCTGC
CGCCAATTGGGCGAGCGCGAGGAAAGCGAACTCGGGGTGGGCTAAGGCCG
CGCTGCTGGTGAAGAAACAGCTGGATTACGCGGGTCAGGTAGAATTCGTC
GTCCGGGGCTGTGCTCTTACCAAAAGCAACAATATCCGAATGCTTCCGGC
GAGAGCAGGGGGGGGGGGCTATCGGTGTGTTTGCCCCTTCCGACGAAATA
ATGTTTTTGTCCTGAAGCGAGGAAAACCACCCCTTTTGTGTTATGCTCTG
CGCGAGCAAGGATTGTTTCACTGATCACGATGTTTTCCCCGTGTTATCGG
TCTAGAAGTGCTTTCAGCGACATGTTTAGCCCCCGCTGGAGACAAAACGC
AGTAGGTAAATGCGGCGGCAGGCTGCGTTCAGGCACGTGCTCTGTGGGGC
TCTGTCCTGTGACTTGAAAGAGATAACGACGACGACAGACGAGGCATTGC
TCGGTTGTGATGGAAAAACAGTGAAACATATTAACCTCTCTCTCCGCCAC
CCCCGCGGCCTTATGAATGAAGTTGTCCGATGCGATGCCACCACCCCCAC
CCCGAAGCCTGGTTGGACACATCAGCCCTCTTGATGCTTCGACGGCGATC
GGGCGTCGGTTTGTGTTGCCCAGCGCAGGTGTCCACCGATTCGGCGCACC
AGCTATCGGTAGCGCACGCGCATGCAGGGGCGATTGATCTCATGACCGGG
CGGCCAACGAAGGCGGTGGTGCAATTTGAGCTACAGCGTCACGAGGCGCA
AAAGGCATCGACTTCAAGAGCTGTGTACCCCGCCGACGCAACTTTTTTCT
GTGATCAAGAGAGCATAACAGCACCACAGCGACACACAACGGACGATATC
TTCACCTGCTTTTTACAGCAGCAGTCGATGACTGCACGTTGTTTATATAA
ATCATCGCGGCATGTGCTTGGTTTTGGTTTTTCTCTCGTGCTTCCGGCTG
GCGGTAGACTAACTGATTTCCTCTTTACATGCCTTACCCATTCACGTGCC
CAAGGCTTGTGATACTACGCTGGAGGCCCTCGCTGAACGCAACCTGGCCG
ACGCTGGAGAAGTGAATGGGGACATGAGGAAGGCGCTTCGTCACCTCCGA
GAGTACCGTGCCCTTGCCCAGCGAGGACGTAACGCCGCTCTCGAGGCTGA
TGCCTGCCGACGGCTATCGTCGATGTACGCGGAGATCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig7950:241..2880-

>mRNA_H-elongata_contig7950.15604.1 ID=mRNA_H-elongata_contig7950.15604.1|Name=mRNA_H-elongata_contig7950.15604.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1650bp|location=Sequence derived from alignment at H-elongata_contig7950:241..2880- (Himanthalia elongata Himel1 dioecious)
ATGATCTTCGCGGCCGGGGCCAAAGCACGCGTACCACCCGCGCAGAGAGC
ACGCTGCGCGATCTTGGAGGGCGTCGCGTGGTCGCTGGCCGGACGGAGCA
GCACAAACGGGATGATCTTCGCGGCCGGGGCCAAAGCACGCGTACCACCC
GCGCAGAGAGCACGCTGCGCGATCTTGGAGGGCGTCGCGTGGTCGCTGGC
CGGACGGAGCAGCACAAACGGGGCTGCGGCTCTAACGCGAGCGGATCAGA
TAGTGGAGAATTTACGGGAACGCGAGAAGCGACCGGTATCACCCGACGGT
AGGGTTGTGCCGGAGCTGGTGCCAGATATCGTTGGCTCGAGCGTCTCCGC
AGGCAACGAGAGCGATGGCCAGCCGAGCATGGCTGCGGCTCTAACGCGAG
CGGATCAGATAGTGGAGAATTTACGGGAACGCGAGAAGCGACCGGTATCA
CCCGACGGTAGGGTTGTGCCGGAGCTGGTGCCAGATATCGTTGGCTCGAG
CGTCTCCGCAGGCAACGAGAGCGATGGCCAGCCGAGCATGCTACAGCTTG
GATTGGTCTGTATCAAGGGGTTAATGGTGAGGGGGGGGCTGGGATTGGGT
TTTGCCTGTACCACCGGCACCGTGACGACTGAAGTAAAAACCGCTCGGGG
TAATGCGGGAGTACGCGCTGCAGCTGCCGCCAATTGGGCGAGCGCGAGGA
AAGCGAACTCGGGGTGGGCTAAGGCCGCGCTGCTGGTGAAGAAACAGCTG
GATTACGCGGCTACAGCTTGGATTGGTCTGTATCAAGGGGTTAATGGTGA
GGGGGGGGCTGGGATTGGGTTTTGCCTGTACCACCGGCACCGTGACGACT
GAAGTAAAAACCGCTCGGGGTAATGCGGGAGTACGCGCTGCAGCTGCCGC
CAATTGGGCGAGCGCGAGGAAAGCGAACTCGGGGTGGGCTAAGGCCGCGC
TGCTGGTGAAGAAACAGCTGGATTACGCGGCGCAGGTGTCCACCGATTCG
GCGCACCAGCTATCGGTAGCGCACGCGCATGCAGGGGCGATTGATCTCAT
GACCGGGCGGCCAACGAAGGCGGTGGTGCAATTTGAGCTACAGCGTCACG
AGGCGCAAAAGGCATCGACTTCAAGAGCTCGCAGGTGTCCACCGATTCGG
CGCACCAGCTATCGGTAGCGCACGCGCATGCAGGGGCGATTGATCTCATG
ACCGGGCGGCCAACGAAGGCGGTGGTGCAATTTGAGCTACAGCGTCACGA
GGCGCAAAAGGCATCGACTTCAAGAGCTGCTTGTGATACTACGCTGGAGG
CCCTCGCTGAACGCAACCTGGCCGACGCTGGAGAAGTGAATGGGGACATG
AGGAAGGCGCTTCGTCACCTCCGAGAGTACCGTGCCCTTGCCCAGCGAGG
ACGTAACGCCGCTCTCGAGGCTGATGCCTGCCGACGGCTATCGTCGATGT
ACGCGGAGATCGCCGCTTGTGATACTACGCTGGAGGCCCTCGCTGAACGC
AACCTGGCCGACGCTGGAGAAGTGAATGGGGACATGAGGAAGGCGCTTCG
TCACCTCCGAGAGTACCGTGCCCTTGCCCAGCGAGGACGTAACGCCGCTC
TCGAGGCTGATGCCTGCCGACGGCTATCGTCGATGTACGCGGAGATCGCC
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