prot_H-elongata_contig7950.15604.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7950.15604.1
Unique Nameprot_H-elongata_contig7950.15604.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length275
Homology
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BLAST of mRNA_H-elongata_contig7950.15604.1 vs. uniprot
Match: D8LBS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS2_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.470e-21
Identity = 61/91 (67.03%), Postives = 67/91 (73.63%), Query Frame = 0 
Query:  185 DLMTGRPTKAVVQFELQRHEAQKASTSRAACDTTLEALAERNLADAGEVNGDMRKALRHLREYRALAQRGRNAALEADACRRLSSMYAEIA 275
            DLMTGRP +A  +FELQ  EAQ A       D  LEALAERNLAD  EV+ D+  AL HLR  RALAQR RN+ALEADACRRLSS+YAEIA
Sbjct:  216 DLMTGRPVQAAERFELQLKEAQNAG------DPILEALAERNLADTREVDEDLPGALAHLRRCRALAQRSRNSALEADACRRLSSVYAEIA 300
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BLAST of mRNA_H-elongata_contig7950.15604.1 vs. uniprot
Match: A0A6H5KC12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC12_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.220e-7
Identity = 55/167 (32.93%), Postives = 79/167 (47.31%), Query Frame = 0 
Query:    2 IFAAGAKAR---VPPAQRARCAILEGVAWSLAGRSSTNGA-------------------AALTRADQIVENLRERE-KRPV--------------SPDGRVVPELVPDIVGSSVSAGNESDGQPSMLQLGLVCIKGLMVRGGLGLGFACTTGTVTTEVKTARGNAGV 131
            + AAG KA      P Q+   A+LEG+AWSLAG+ S  GA                   AA+ RA++ +E   + E +RP               S D   +     + VG SV AG+E+  Q + LQLG++  +GL+ RGG G+G A +T  V     +A+  A V
Sbjct:   90 LIAAGCKAGDLGAHPTQKMNGAMLEGLAWSLAGQGSAEGASLLFRGFVVGRRGEIGERAAAMKRAERGLEKFLDSEHRRPSVAASAAGVAKRSASSADDVPLSARAQEAVGVSVPAGSENSDQITALQLGVLGTQGLVARGGFGMGAAFSTSAVAMGSVSAKARAAV 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7950.15604.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBS2_ECTSI3.470e-2167.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC12_9PHAE4.220e-732.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 114..275
e-value: 2.6E-5
score: 25.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7950contigH-elongata_contig7950:241..2532 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7950.15604.1mRNA_H-elongata_contig7950.15604.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7950 241..2880 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7950.15604.1 ID=prot_H-elongata_contig7950.15604.1|Name=mRNA_H-elongata_contig7950.15604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=275bp
MIFAAGAKARVPPAQRARCAILEGVAWSLAGRSSTNGAAALTRADQIVEN
LREREKRPVSPDGRVVPELVPDIVGSSVSAGNESDGQPSMLQLGLVCIKG
LMVRGGLGLGFACTTGTVTTEVKTARGNAGVRAAAAANWASARKANSGWA
KAALLVKKQLDYAAQVSTDSAHQLSVAHAHAGAIDLMTGRPTKAVVQFEL
QRHEAQKASTSRAACDTTLEALAERNLADAGEVNGDMRKALRHLREYRAL
AQRGRNAALEADACRRLSSMYAEIA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf