mRNA_H-elongata_contig79229.15584.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79229.15584.1
Unique NamemRNA_H-elongata_contig79229.15584.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A6H5KD38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD38_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.380e-35
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = 1
Query:  115 LSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
            +S+DGW+I+++NQPANSPD N+LDLGFFNSIQSLQ+RTTP +IDDL+   KDAW ED P VLNRVWLSLQ CLEQ
Sbjct:    1 MSADGWDIQLINQPANSPDKNVLDLGFFNSIQSLQDRTTPTSIDDLVGAEKDAWNEDPPVVLNRVWLSLQPCLEQ 75          
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: F0WCU3_9STRA (Mariner transposase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCU3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.350e-35
Identity = 60/113 (53.10%), Postives = 86/113 (76.11%), Query Frame = 1
Query:    1 MVTKMIEVTKESYKRMLIDRQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
            M+TK I V KE+Y+  LID++DNA+PHL  NDP++ AA +  GW IR+  QP NSPD N+L LGFFNSIQ+LQ++  PK ID+LI+ V ++++E  P+ LN V+L+LQ+ L++
Sbjct:    1 MITKPISVDKEAYRAALIDKEDNAKPHLPPNDPDIVAAGTDGGWNIRLQCQPPNSPDFNVLYLGFFNSIQALQHQKYPKTIDELIECVTESFKELMPSTLNSVYLTLQSVLQE 113          
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 4.560e-34
Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    1 MVTKMIEVTKESYKRMLID--------------------RQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLE 336
            M TK +EVTKE +KR ++D                    + DN   H +N DP++ AA  +DGW+IR++NQP+NSPDTNILDLGFFN++QSLQ+R TP+ +D+ I  VK A+EE SP+  ++VW+SLQA L+
Sbjct:  115 METKCVEVTKEVFKRKVVDEVFPAIKARWPGGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAILQ 246          
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 8.620e-32
Identity = 54/92 (58.70%), Postives = 74/92 (80.43%), Query Frame = 1
Query:   64 DNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
            DN   H +N DP++ AA ++DGW+IR++NQP+N P TNILDLGFFN+IQSLQ+RTTP+ +D+ I  VK A+EE SP+ L++VW SLQA L++
Sbjct:    4 DNKPSHCINADPDVVAAGTADGWDIRLINQPSNIPHTNILDLGFFNAIQSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESLQAILQE 95          
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A4Q9LVU3_9MICR (Uncharacterized protein n=1 Tax=Hamiltosporidium tvaerminnensis TaxID=1176355 RepID=A0A4Q9LVU3_9MICR)

HSP 1 Score: 106 bits (265), Expect = 2.200e-27
Identity = 50/99 (50.51%), Postives = 70/99 (70.71%), Query Frame = 1
Query:   40 KRMLIDRQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLE 336
            K+ +  +QDNA+PH  +ND ++ A  S+D W I+   QPANSPD N+LDLGFFNSIQSLQ+  +P  ID+LI  V+DA+ +     L+ V+ +LQAC+E
Sbjct:   20 KKTIYVQQDNAKPHFSDNDADIVALGSADDWNIKFKAQPANSPDLNVLDLGFFNSIQSLQHEASPHTIDELINCVQDAFHQLEANTLDNVFTTLQACME 118          
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A4Q9LUD7_9MICR (Uncharacterized protein (Fragment) n=2 Tax=Hamiltosporidium TaxID=1176354 RepID=A0A4Q9LUD7_9MICR)

HSP 1 Score: 107 bits (266), Expect = 3.030e-27
Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   40 KRMLIDRQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLE 336
            K+++  +QDNA+PH  +ND ++ A  S+D W I+   QPANSPD N+LDLGFFNSIQSLQ+  +P  ID+LI  V+DA+ +     L+ V+ +LQAC+E
Sbjct:   13 KKIIYVQQDNAKPHFSDNDADIVALGSADDWNIKFKAQPANSPDFNVLDLGFFNSIQSLQHEASPHTIDELINCVQDAFHQLEANTLDNVFTTLQACME 111          
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.330e-27
Identity = 59/132 (44.70%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    4 VTKMIEVTKESYKRMLIDR--------------------QDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
            VT  + VTK  Y+R L+D+                    QDNA+PH+  +DPE+ AA   +GW I+++ QPA SPD N+LDLGFFN+IQSLQ++TT + IDDLIK V+DA+E  +  VL++ +++LQ  +E+
Sbjct:  255 VTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVLAAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVMEE 386          
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A024T7X9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T7X9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.140e-27
Identity = 50/131 (38.17%), Postives = 81/131 (61.83%), Query Frame = 1
Query:    4 VTKMIEVTKESYKRMLIDR-------------------QDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
            V + + VT++ Y+RML+D+                   QDNA+PH++ ND E+ AA + DGW + ++ QP NSP+ N+LDLGFF +IQSLQ+    + ++D++    DAW    P+ L+R +++LQAC ++
Sbjct:   30 VLQPVNVTRDVYRRMLVDKVIPAIREKWPSAPTKLKIQQDNAKPHVLPNDAEVVAACNKDGWAMSIVCQPPNSPELNVLDLGFFRAIQSLQSNHHSRTVEDIVAATMDAWNVVDPSTLSRNFMTLQACFQE 160          
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: UPI0020091A08 (uncharacterized protein LOC125206097 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020091A08)

HSP 1 Score: 112 bits (279), Expect = 8.190e-27
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   58 RQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
            +QDNA PH+   DPE  A  +SDG++I ++ QP NSPDTNILDLGFF +IQSLQ++   +N+D+L++ V  A+EE +P  LNRV+LSLQACL Q
Sbjct:  294 QQDNATPHITATDPEFQAIANSDGFKIHLICQPPNSPDTNILDLGFFRAIQSLQHQKPCRNVDELVENVCKAYEELTPQTLNRVFLSLQACLTQ 387          
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A6A4AR50_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4AR50_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.360e-26
Identity = 53/94 (56.38%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   58 RQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
            +QDNA+PH+  +D E+ AA  SDGW +  LNQPA SPD N LDLG+F SIQ+LQ++T P+   DLIK VK A+EE +   LN+ +LSLQA +EQ
Sbjct:   34 QQDNAKPHVHEDDAEVLAAGCSDGWMMHPLNQPAQSPDLNCLDLGYFASIQTLQSKTHPRTTVDLIKEVKLAFEETTAVTLNKTFLSLQAVMEQ 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD38_9PHAE2.380e-3574.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0WCU3_9STRA3.350e-3553.10Mariner transposase putative n=1 Tax=Albugo laibac... [more]
A0A6H5JGY9_9PHAE4.560e-3448.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9R2_9PHAE8.620e-3258.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4Q9LVU3_9MICR2.200e-2750.51Uncharacterized protein n=1 Tax=Hamiltosporidium t... [more]
A0A4Q9LUD7_9MICR3.030e-2750.51Uncharacterized protein (Fragment) n=2 Tax=Hamilto... [more]
A0A6A5AA16_9STRA3.330e-2744.70Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024T7X9_9STRA8.140e-2738.17Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
UPI0020091A088.190e-2757.45uncharacterized protein LOC125206097 n=1 Tax=Salvi... [more]
A0A6A4AR50_9STRA1.360e-2656.38Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79229contigH-elongata_contig79229:1929..2345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue5e-22
Seed eggNOG ortholog161934.XP_010696339.1
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.3897436-CDS-H-elongata_contig79229:1928..22071622931197.3897436-CDS-H-elongata_contig79229:1928..2207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79229 1929..2207 -
1691679737.560579-CDS-H-elongata_contig79229:1928..22071691679737.560579-CDS-H-elongata_contig79229:1928..2207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79229 1929..2207 -
1622931197.4036906-CDS-H-elongata_contig79229:2285..23451622931197.4036906-CDS-H-elongata_contig79229:2285..2345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79229 2286..2345 -
1691679737.5694544-CDS-H-elongata_contig79229:2285..23451691679737.5694544-CDS-H-elongata_contig79229:2285..2345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79229 2286..2345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79229.15584.1prot_H-elongata_contig79229.15584.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79229 1929..2345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79229.15584.1

>prot_H-elongata_contig79229.15584.1 ID=prot_H-elongata_contig79229.15584.1|Name=mRNA_H-elongata_contig79229.15584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MVTKMIEVTKESYKRMLIDRQDNARPHLVNNDPELTAALSSDGWEIRMLN
QPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVL
NRVWLSLQACLEQ
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mRNA from alignment at H-elongata_contig79229:1929..2345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79229.15584.1 ID=mRNA_H-elongata_contig79229.15584.1|Name=mRNA_H-elongata_contig79229.15584.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig79229:1929..2345- (Himanthalia elongata Himel1 dioecious)
ATGGTGACAAAGATGATAGAGGTCACCAAGGAGAGCTACAAGAGGATGCT CATCGACCGCGTCATCCCCGACATCAAGAGAGTGTTCCCCCGTCCTCCGG CCAGCGCCAGTCCGGAAGACAGGATCGTTTGGCTGCAGCAGGATAACGCC CGCCCACACCTGGTCAACAACGACCCAGAACTCACGGCTGCATTGTCGTC AGACGGGTGGGAGATTCGGATGCTTAACCAGCCAGCCAACAGCCCCGACA CGAACATCCTTGATTTGGGATTCTTCAACTCCATCCAGTCCCTACAGAAC CGCACGACCCCGAAGAACATCGACGACCTGATCAAGGTAGTGAAGGACGC GTGGGAGGAAGACTCGCCAGCGGTGCTGAACCGGGTGTGGCTGAGCCTGC AGGCCTGCCTGGAGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig79229:1929..2345-

>mRNA_H-elongata_contig79229.15584.1 ID=mRNA_H-elongata_contig79229.15584.1|Name=mRNA_H-elongata_contig79229.15584.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig79229:1929..2345- (Himanthalia elongata Himel1 dioecious)
ATGGTGACAAAGATGATAGAGGTCACCAAGGAGAGCTACAAGAGGATGCT
CATCGACCGCATGGTGACAAAGATGATAGAGGTCACCAAGGAGAGCTACA
AGAGGATGCTCATCGACCGCCAGGATAACGCCCGCCCACACCTGGTCAAC
AACGACCCAGAACTCACGGCTGCATTGTCGTCAGACGGGTGGGAGATTCG
GATGCTTAACCAGCCAGCCAACAGCCCCGACACGAACATCCTTGATTTGG
GATTCTTCAACTCCATCCAGTCCCTACAGAACCGCACGACCCCGAAGAAC
ATCGACGACCTGATCAAGGTAGTGAAGGACGCGTGGGAGGAAGACTCGCC
AGCGGTGCTGAACCGGGTGTGGCTGAGCCTGCAGGCCTGCCTGGAGCAGC
AGGATAACGCCCGCCCACACCTGGTCAACAACGACCCAGAACTCACGGCT
GCATTGTCGTCAGACGGGTGGGAGATTCGGATGCTTAACCAGCCAGCCAA
CAGCCCCGACACGAACATCCTTGATTTGGGATTCTTCAACTCCATCCAGT
CCCTACAGAACCGCACGACCCCGAAGAACATCGACGACCTGATCAAGGTA
GTGAAGGACGCGTGGGAGGAAGACTCGCCAGCGGTGCTGAACCGGGTGTG
GCTGAGCCTGCAGGCCTGCCTGGAGCAG
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