mRNA_H-elongata_contig79229.15584.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A6H5KD38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD38_9PHAE) HSP 1 Score: 125 bits (313), Expect = 2.380e-35 Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = 1
Query: 115 LSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
+S+DGW+I+++NQPANSPD N+LDLGFFNSIQSLQ+RTTP +IDDL+ KDAW ED P VLNRVWLSLQ CLEQ
Sbjct: 1 MSADGWDIQLINQPANSPDKNVLDLGFFNSIQSLQDRTTPTSIDDLVGAEKDAWNEDPPVVLNRVWLSLQPCLEQ 75
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: F0WCU3_9STRA (Mariner transposase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCU3_9STRA) HSP 1 Score: 126 bits (316), Expect = 3.350e-35 Identity = 60/113 (53.10%), Postives = 86/113 (76.11%), Query Frame = 1
Query: 1 MVTKMIEVTKESYKRMLIDRQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
M+TK I V KE+Y+ LID++DNA+PHL NDP++ AA + GW IR+ QP NSPD N+L LGFFNSIQ+LQ++ PK ID+LI+ V ++++E P+ LN V+L+LQ+ L++
Sbjct: 1 MITKPISVDKEAYRAALIDKEDNAKPHLPPNDPDIVAAGTDGGWNIRLQCQPPNSPDFNVLYLGFFNSIQALQHQKYPKTIDELIECVTESFKELMPSTLNSVYLTLQSVLQE 113
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE) HSP 1 Score: 129 bits (323), Expect = 4.560e-34 Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = 1
Query: 1 MVTKMIEVTKESYKRMLID--------------------RQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLE 336
M TK +EVTKE +KR ++D + DN H +N DP++ AA +DGW+IR++NQP+NSPDTNILDLGFFN++QSLQ+R TP+ +D+ I VK A+EE SP+ ++VW+SLQA L+
Sbjct: 115 METKCVEVTKEVFKRKVVDEVFPAIKARWPGGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAILQ 246
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE) HSP 1 Score: 119 bits (297), Expect = 8.620e-32 Identity = 54/92 (58.70%), Postives = 74/92 (80.43%), Query Frame = 1
Query: 64 DNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
DN H +N DP++ AA ++DGW+IR++NQP+N P TNILDLGFFN+IQSLQ+RTTP+ +D+ I VK A+EE SP+ L++VW SLQA L++
Sbjct: 4 DNKPSHCINADPDVVAAGTADGWDIRLINQPSNIPHTNILDLGFFNAIQSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESLQAILQE 95
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A4Q9LVU3_9MICR (Uncharacterized protein n=1 Tax=Hamiltosporidium tvaerminnensis TaxID=1176355 RepID=A0A4Q9LVU3_9MICR) HSP 1 Score: 106 bits (265), Expect = 2.200e-27 Identity = 50/99 (50.51%), Postives = 70/99 (70.71%), Query Frame = 1
Query: 40 KRMLIDRQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLE 336
K+ + +QDNA+PH +ND ++ A S+D W I+ QPANSPD N+LDLGFFNSIQSLQ+ +P ID+LI V+DA+ + L+ V+ +LQAC+E
Sbjct: 20 KKTIYVQQDNAKPHFSDNDADIVALGSADDWNIKFKAQPANSPDLNVLDLGFFNSIQSLQHEASPHTIDELINCVQDAFHQLEANTLDNVFTTLQACME 118
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A4Q9LUD7_9MICR (Uncharacterized protein (Fragment) n=2 Tax=Hamiltosporidium TaxID=1176354 RepID=A0A4Q9LUD7_9MICR) HSP 1 Score: 107 bits (266), Expect = 3.030e-27 Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = 1
Query: 40 KRMLIDRQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLE 336
K+++ +QDNA+PH +ND ++ A S+D W I+ QPANSPD N+LDLGFFNSIQSLQ+ +P ID+LI V+DA+ + L+ V+ +LQAC+E
Sbjct: 13 KKIIYVQQDNAKPHFSDNDADIVALGSADDWNIKFKAQPANSPDFNVLDLGFFNSIQSLQHEASPHTIDELINCVQDAFHQLEANTLDNVFTTLQACME 111
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA) HSP 1 Score: 113 bits (282), Expect = 3.330e-27 Identity = 59/132 (44.70%), Postives = 86/132 (65.15%), Query Frame = 1
Query: 4 VTKMIEVTKESYKRMLIDR--------------------QDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
VT + VTK Y+R L+D+ QDNA+PH+ +DPE+ AA +GW I+++ QPA SPD N+LDLGFFN+IQSLQ++TT + IDDLIK V+DA+E + VL++ +++LQ +E+
Sbjct: 255 VTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVLAAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVMEE 386
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A024T7X9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T7X9_9STRA) HSP 1 Score: 107 bits (268), Expect = 8.140e-27 Identity = 50/131 (38.17%), Postives = 81/131 (61.83%), Query Frame = 1
Query: 4 VTKMIEVTKESYKRMLIDR-------------------QDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
V + + VT++ Y+RML+D+ QDNA+PH++ ND E+ AA + DGW + ++ QP NSP+ N+LDLGFF +IQSLQ+ + ++D++ DAW P+ L+R +++LQAC ++
Sbjct: 30 VLQPVNVTRDVYRRMLVDKVIPAIREKWPSAPTKLKIQQDNAKPHVLPNDAEVVAACNKDGWAMSIVCQPPNSPELNVLDLGFFRAIQSLQSNHHSRTVEDIVAATMDAWNVVDPSTLSRNFMTLQACFQE 160
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: UPI0020091A08 (uncharacterized protein LOC125206097 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020091A08) HSP 1 Score: 112 bits (279), Expect = 8.190e-27 Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 1
Query: 58 RQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
+QDNA PH+ DPE A +SDG++I ++ QP NSPDTNILDLGFF +IQSLQ++ +N+D+L++ V A+EE +P LNRV+LSLQACL Q
Sbjct: 294 QQDNATPHITATDPEFQAIANSDGFKIHLICQPPNSPDTNILDLGFFRAIQSLQHQKPCRNVDELVENVCKAYEELTPQTLNRVFLSLQACLTQ 387
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Match: A0A6A4AR50_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4AR50_9STRA) HSP 1 Score: 105 bits (262), Expect = 1.360e-26 Identity = 53/94 (56.38%), Postives = 69/94 (73.40%), Query Frame = 1
Query: 58 RQDNARPHLVNNDPELTAALSSDGWEIRMLNQPANSPDTNILDLGFFNSIQSLQNRTTPKNIDDLIKVVKDAWEEDSPAVLNRVWLSLQACLEQ 339
+QDNA+PH+ +D E+ AA SDGW + LNQPA SPD N LDLG+F SIQ+LQ++T P+ DLIK VK A+EE + LN+ +LSLQA +EQ
Sbjct: 34 QQDNAKPHVHEDDAEVLAAGCSDGWMMHPLNQPAQSPDLNCLDLGYFASIQTLQSKTHPRTTVDLIKEVKLAFEETTAVTLNKTFLSLQAVMEQ 127 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79229.15584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79229.15584.1 >prot_H-elongata_contig79229.15584.1 ID=prot_H-elongata_contig79229.15584.1|Name=mRNA_H-elongata_contig79229.15584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp MVTKMIEVTKESYKRMLIDRQDNARPHLVNNDPELTAALSSDGWEIRMLNback to top mRNA from alignment at H-elongata_contig79229:1929..2345- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79229.15584.1 ID=mRNA_H-elongata_contig79229.15584.1|Name=mRNA_H-elongata_contig79229.15584.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig79229:1929..2345- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79229:1929..2345- >mRNA_H-elongata_contig79229.15584.1 ID=mRNA_H-elongata_contig79229.15584.1|Name=mRNA_H-elongata_contig79229.15584.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig79229:1929..2345- (Himanthalia elongata Himel1 dioecious)back to top |