mRNA_H-elongata_contig78819.15550.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78819.15550.1
Unique NamemRNA_H-elongata_contig78819.15550.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78819.15550.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 2.230e-101
Identity = 186/249 (74.70%), Postives = 194/249 (77.91%), Query Frame = 1
Query:    1 GKTDVAVQAISNLYHLFPNQRTIMLAHSNAALNDLFEKISEKNIDERHLLRLGAGERELREGTMKDFSKFGRVNYTLKRRLELLAEVQRLAESIEVEGDVGYTCETAEYFQLFHVTSRIERFEAELEQRKTAAKVARGKAPSARDAQGKPESGSKDDDRVEAVAEDDGGENIEGAVKELFPFNKFFVNAPAGDSLFGGKVE-EDIEVARGCFRHIGKMFEELADYRAFELLRSHSARSDYLLTKQVSYI 744
            GKTDVAVQ ISNLYH FPNQRTIM+AHSNAALNDLFEKI EK+IDERHLLRLGAGERELRE TMKDFSKFGRVNYTLKRRLELLAEVQRLAE+I VEGDVGYT ETAEYFQLFHVTSRIERFEAELEQRK  A  +   +P                    A           G VKELFPF+ FF NAPAGD LFGG  + ED+EVARGCFRHI KMFEELADYRAFELLRSHSARSDYLLTKQ   I
Sbjct: 1478 GKTDVAVQVISNLYHSFPNQRTIMVAHSNAALNDLFEKIMEKDIDERHLLRLGAGERELREDTMKDFSKFGRVNYTLKRRLELLAEVQRLAETIGVEGDVGYTGETAEYFQLFHVTSRIERFEAELEQRKPTAPPSATASPEXXXXXXXXXXXXXXXXXXXAA----------GVVKELFPFHGFFANAPAGDKLFGGVDDGEDLEVARGCFRHISKMFEELADYRAFELLRSHSARSDYLLTKQARII 1716          
BLAST of mRNA_H-elongata_contig78819.15550.1 vs. uniprot
Match: A0A812WMS1_SYMMI (AQR protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WMS1_SYMMI)

HSP 1 Score: 215 bits (548), Expect = 6.750e-66
Identity = 120/259 (46.33%), Postives = 158/259 (61.00%), Query Frame = 1
Query:    1 GKTDVAVQAISNLYHLFPNQRTIMLAHSNAALNDLFEKISEKNIDERHLLRLGAGERELREGTMK-----------DFSKFGRVNYTLKRRLELLAEVQRLAESIEVEGDVGYTCETAEYFQLFHVTSRIERFEAELEQRKTAAKVARGKAPSARDAQGKPESGSKDDDRVEAVAEDDGGENIEGAVKELFPFNKFFVNAPAGDSLFGGKVEEDIEVARGCFRHIGKMFEELADYRAFELLRSHSARSDYLLTKQVSYI 744
            GKTDVAVQ I NLYH +P Q+ +++AHSN ALND+FEKI E+++D RHLLRLG+GE+ L +G  +            FSK GRVN++L RR +LL ++Q LA S++V GDVGYTCETAEYF L H+ +RIE+F A++  R                                      GG++    V E+FPF+ +F +AP    LF G  ++DI+VA GCFRH+   F EL DYRAFELLR+ + R DYLLTKQ   +
Sbjct:   27 GKTDVAVQIICNLYHNYPTQKILVIAHSNTALNDVFEKIMERDVDPRHLLRLGSGEKTLLQGKAQGRGTDAAGEEDQFSKQGRVNWSLARRSQLLQQIQYLASSLDVAGDVGYTCETAEYFFLEHIQARIEKFHADIHAR--------------------------------------GGDSA-NTVAEVFPFSNYFASAP--QPLFTGSFQDDIDVAEGCFRHLRNAFTELGDYRAFELLRTQAHRGDYLLTKQARIV 244          
BLAST of mRNA_H-elongata_contig78819.15550.1 vs. uniprot
Match: UPI0005298EFD (intron-binding protein aquarius-like n=1 Tax=Colius striatus TaxID=57412 RepID=UPI0005298EFD)

HSP 1 Score: 216 bits (549), Expect = 8.570e-65
Identity = 130/249 (52.21%), Postives = 155/249 (62.25%), Query Frame = 1
Query:    1 GKTDVAVQAISNLYHLFPNQRTIMLAHSNAALNDLFEKISEKNIDERHLLRLGAGERELREGTMKDFSKFGRVNYTLKRRLELLAEVQRLAESIEVEGDVGYTCETAEYFQLFHVTSRIERFEAELEQRKTAAKVARGKAPSARDAQGKPESGSKDDDRVEAVAEDDGGENIEGAVKELFPFNKFFVNAPAGDSLFGGK-VEEDIEVARGCFRHIGKMFEELADYRAFELLRSHSARSDYLLTKQVSYI 744
            GKTDVAVQ ISNLYH FP QRT+++ HSN ALN LFEKI   +IDERHLLRLG GE EL   T KDFS++GRVNY L RRLELL EV RL ES+ V GDV YTCETA +F L+ V SR E + +++       KV  GK P A D                              V  LFPF+++F NAP    +F GK  EED+E+A GCFRH+ K+F +L ++RAFELLRS   RS YLL K+   I
Sbjct:  161 GKTDVAVQIISNLYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELE--TEKDFSRYGRVNYVLARRLELLQEVGRLQESLGVPGDVSYTCETAGHFFLYQVMSRWEEYISKV-------KVKGGKFPDATD------------------------------VSSLFPFHQYFANAP--QPIFKGKSYEEDMEIAEGCFRHLKKIFTQLEEFRAFELLRSGLDRSKYLLVKEAKII 368          
BLAST of mRNA_H-elongata_contig78819.15550.1 vs. uniprot
Match: A0A835YIG8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIG8_9STRA)

HSP 1 Score: 218 bits (556), Expect = 9.020e-63
Identity = 136/265 (51.32%), Postives = 161/265 (60.75%), Query Frame = 1
Query:    1 GKTDVAVQAISNLYHLFP-NQRTIMLAHSNAALNDLFEKISEKNIDERHLLRLGAGERELREGTMKDFSKFGRVNYTLKRRLELLAEVQRLAE----SIEVEGD------------VGYTCETAEYFQLFHVTSRIERFEAELEQRKTAAKVARGKAPSARDAQGKPESGSKDDDRVEAVAEDDGGENIEGAVKELFPFNKFFVNAPAGDSLFGGKVEEDIEVARGCFRHIGKMFEELADYRAFELLRSHSARSDYLLTKQVSYI 744
            GKTDVAVQ I+NLYHL     RT+++AHSNAALNDLFEKI E++IDERHLLRLGAGE+EL   T KDFSK GRVNYTL RRL+LL EV RLA     S+  EG              G++CETA +FQL+HVTSRIE FEAE         +A    P   D                             AV  LFPF KFF +AP           +D+ +ARGCFRH+ ++FEELA+YRAFELLR+ SAR+DYLLTKQ   +
Sbjct:  174 GKTDVAVQIIANLYHLGQAGHRTLLVAHSNAALNDLFEKIMERDIDERHLLRLGAGEKEL--ATSKDFSKAGRVNYTLSRRLKLLEEVSRLASTLTLSLATEGAEGAGGPAGLAEAAGHSCETAAHFQLYHVTSRIEAFEAE---------IAAQPQPLPAD-----------------------------AVARLFPFAKFFSDAPVQPLFEQKDGAKDLSIARGCFRHLARVFEELAEYRAFELLRTQSARADYLLTKQARVV 398          
BLAST of mRNA_H-elongata_contig78819.15550.1 vs. uniprot
Match: A0A7S2C5H4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C5H4_9STRA)

HSP 1 Score: 216 bits (550), Expect = 9.900e-63
Identity = 125/251 (49.80%), Postives = 162/251 (64.54%), Query Frame = 1
Query:    1 GKTDVAVQAISNLYHLFPNQRTIMLAHSNAALNDLFEKISEKNIDERHLLRLGAGERELREGTM-KDFSKFGRVNYTLKRRLELLAEVQRLAESIEVEGDVGYTCETAEYFQLFHVTSRIERFEAELEQRKTAAKVARGKAPSARDAQGKPESGSKDDDRVEAVAEDDGGENIEGAVKELFPFNKFFVNAPAGDSLFGGKVEED------IEVARGCFRHIGKMFEELADYRAFELLRSHSARSDYLLTKQ 732
            GKTDVAVQ I+N+YH  P Q+T+++ HSNAALNDLF+KI E+++ ERH+LRLGAG  +L E T  +DFSKFGRVN+TL RR ELL +VQRLA S+ ++GD  YTCE AE+F L+H+TSR+E+FEAE+                                  +  A D+  E     +  LFPF  FF +AP  D++F   + E       ++VARGCFRHI K+FEEL D+RAFELLR+H  RS+YLL KQ
Sbjct:   22 GKTDVAVQIIANIYHNCPTQKTLIITHSNAALNDLFQKIMERDVLERHMLRLGAGVEKLAEHTGGRDFSKFGRVNFTLARREELLDQVQRLASSLGIQGD-AYTCEAAEFFDLYHITSRVEKFEAEV---------------------------------AKLQAADNAEELTALKIVSLFPFANFFSDAPH-DAMFEPTLGESNDVIKALDVARGCFRHIHKVFEELKDFRAFELLRNHRMRSNYLLLKQ 237          
BLAST of mRNA_H-elongata_contig78819.15550.1 vs. uniprot
Match: UPI001C71CA01 (RNA helicase aquarius-like n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C71CA01)

HSP 1 Score: 209 bits (532), Expect = 4.640e-62
Identity = 126/249 (50.60%), Postives = 153/249 (61.45%), Query Frame = 1
Query:    1 GKTDVAVQAISNLYHLFPNQRTIMLAHSNAALNDLFEKISEKNIDERHLLRLGAGERELREGTMKDFSKFGRVNYTLKRRLELLAEVQRLAESIEVEGDVGYTCETAEYFQLFHVTSRIERFEAELEQRKTAAKVARGKAPSARDAQGKPESGSKDDDRVEAVAEDDGGENIEGAVKELFPFNKFFVNAPAGDSLFGGKV-EEDIEVARGCFRHIGKMFEELADYRAFELLRSHSARSDYLLTKQVSYI 744
            GKTDVAVQ ISNLYH FPNQRT+++ HSN ALN LFEKI   +IDERHLLRLG GE  L   T KDFS++GRVNY L +RLELL  V++L ES+ V GDV YTCETA +F ++HV +R E F +++       K  RGK  +                                 V + FPF+KFF  AP    LF GK  EEDIE+A GCFR+I K+F +L ++RAFELLRS   RS YLL K+   I
Sbjct:  115 GKTDVAVQIISNLYHNFPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE--TEKDFSRYGRVNYVLAKRLELLDHVRKLQESLGVSGDVSYTCETAGHFFMYHVLARWEEFLSKV-------KPGRGKKVAL------------------------------NLVADCFPFSKFFEKAP--QPLFKGKTYEEDIEIAEGCFRYIKKIFSQLEEFRAFELLRSGLDRSQYLLVKEAKII 322          
BLAST of mRNA_H-elongata_contig78819.15550.1 vs. uniprot
Match: A0A443SL56_9ACAR (Intron-binding protein aquarius-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SL56_9ACAR)

HSP 1 Score: 219 bits (557), Expect = 1.590e-61
Identity = 127/249 (51.00%), Postives = 159/249 (63.86%), Query Frame = 1
Query:    1 GKTDVAVQAISNLYHLFPNQRTIMLAHSNAALNDLFEKISEKNIDERHLLRLGAGERELREGTMKDFSKFGRVNYTLKRRLELLAEVQRLAESIEVEGDVGYTCETAEYFQLFHVTSRIERFEAELEQRKTAAKVARGKAPSARDAQGKPESGSKDDDRVEAVAEDDGGENIEGAVKELFPFNKFFVNAPAGDSLFG-GKVEEDIEVARGCFRHIGKMFEELADYRAFELLRSHSARSDYLLTKQVSYI 744
            GKTDVAVQ ISN+YH FPNQRT+++ HSN ALN LFEKI   +IDERHLLRLG GE EL   T KDFS++GRVNY LK+RLELL +VQRLAES E  GDV YTCETA YF L+HV SR E + +++  +                         KDD  +               V++LFPF K+F +AP    LF   K EED+E+A+GC+RHI K+F +L +++AFE+LRS S RS YLL ++   I
Sbjct:  689 GKTDVAVQIISNIYHNFPNQRTLIVTHSNQALNQLFEKIIALDIDERHLLRLGHGEEELE--TEKDFSRYGRVNYVLKKRLELLNQVQRLAESFEAAGDVAYTCETASYFFLYHVLSRWEEYMSKIYDK-------------------------KDDPTI---------------VQKLFPFTKYFEDAP--QPLFKCEKFEEDLEIAKGCYRHIKKIFTQLDEFKAFEMLRSGSDRSRYLLVREAKII 893          
BLAST of mRNA_H-elongata_contig78819.15550.1 vs. uniprot
Match: UPI001C9D1E7C (RNA helicase aquarius n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9D1E7C)

HSP 1 Score: 218 bits (556), Expect = 2.180e-61
Identity = 133/251 (52.99%), Postives = 157/251 (62.55%), Query Frame = 1
Query:    1 GKTDVAVQAISNLYHLFPNQRTIMLAHSNAALNDLFEKISEKNIDERHLLRLGAGERELREGTMKDFSKFGRVNYTLKRRLELLAEVQRLAESIEVEGDVGYTCETAEYFQLFHVTSRIERFEAELEQRKTAAKVARGKAPSARDAQGKPESGSKDDDRVEAVAEDDGGEN--IEGAVKELFPFNKFFVNAPAGDSLFGGK-VEEDIEVARGCFRHIGKMFEELADYRAFELLRSHSARSDYLLTKQVSYI 744
            GKTDVAVQ ISNLYH FPNQRT+++ HSN ALN LFEKI   +IDERHLLRLG GE  L   T KDFS++GRVNY L +RL+LL EVQRL ES+ V+GDV YTCETA +F +  V+SR ERFEA LEQR                                      GG+N  +   V E FPF+KFF NAP    LF  K  EED+E+AR CFR+I + F +L ++RAFELLRS   RS YLL K+   I
Sbjct:  825 GKTDVAVQIISNLYHNFPNQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEALE--TEKDFSRYGRVNYVLAKRLDLLMEVQRLQESLNVKGDVAYTCETAGHFFMDQVSSRWERFEARLEQR-------------------------------------GGGKNSALASLVDEEFPFHKFFDNAP--QPLFKRKDYEEDLEIARSCFRYIERTFTQLEEFRAFELLRSGLDRSKYLLVKEAKVI 1034          
BLAST of mRNA_H-elongata_contig78819.15550.1 vs. uniprot
Match: A0A0Q3MP80_AMAAE (Uncharacterized protein n=5 Tax=Neognathae TaxID=8825 RepID=A0A0Q3MP80_AMAAE)

HSP 1 Score: 212 bits (539), Expect = 4.600e-61
Identity = 127/249 (51.00%), Postives = 152/249 (61.04%), Query Frame = 1
Query:    1 GKTDVAVQAISNLYHLFPNQRTIMLAHSNAALNDLFEKISEKNIDERHLLRLGAGERELREGTMKDFSKFGRVNYTLKRRLELLAEVQRLAESIEVEGDVGYTCETAEYFQLFHVTSRIERFEAELEQRKTAAKVARGKAPSARDAQGKPESGSKDDDRVEAVAEDDGGENIEGAVKELFPFNKFFVNAPAGDSLFGGK-VEEDIEVARGCFRHIGKMFEELADYRAFELLRSHSARSDYLLTKQVSYI 744
            GKTDVAVQ ISNLYH FP QRT+++ HSN ALN LFEKI   +IDERHLLRLG GE EL   T KDFS++GRVNY L RRLELL EV RL ES+ V GDV YTCETA +F L+ V SR E + +++       K   GK P   D                              V   FPF+++F NAP    +F GK  EED+E+A GCFRH+ K+F +L ++RAFELLRS   RS YLL K+   I
Sbjct:   11 GKTDVAVQIISNLYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELE--TEKDFSRYGRVNYVLARRLELLREVGRLQESLGVPGDVSYTCETAGHFFLYQVMSRWEEYISKV-------KAKGGKVPDVTD------------------------------VSSFFPFHQYFANAP--QPVFKGKSYEEDMEIAEGCFRHVKKIFTQLEEFRAFELLRSGLDRSKYLLVKEAKII 218          
BLAST of mRNA_H-elongata_contig78819.15550.1 vs. uniprot
Match: V9KHE5_CALMI (Intron-binding protein aquarius-like protein (Fragment) n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9KHE5_CALMI)

HSP 1 Score: 215 bits (547), Expect = 4.880e-61
Identity = 131/249 (52.61%), Postives = 156/249 (62.65%), Query Frame = 1
Query:    1 GKTDVAVQAISNLYHLFPNQRTIMLAHSNAALNDLFEKISEKNIDERHLLRLGAGERELREGTMKDFSKFGRVNYTLKRRLELLAEVQRLAESIEVEGDVGYTCETAEYFQLFHVTSRIERFEAELEQRKTAAKVARGKAPSARDAQGKPESGSKDDDRVEAVAEDDGGENIEGAVKELFPFNKFFVNAPAGDSLFGGK-VEEDIEVARGCFRHIGKMFEELADYRAFELLRSHSARSDYLLTKQVSYI 744
            GKTDVAVQ ISNLYH FP QRT+++ HSN ALN LFEKI   +IDERHLLRLG GE EL   T KDFS++GRVNY L RRLELL EV RL ES+EV GDV YTCETA +F L+ V SR E +          +KV             K +SG+  D                 AV +LFPF+K+F NAP    +F  +  EED+E+A GCFRHI K+F +L ++RAFELLRS   RS YLL K+   I
Sbjct:  569 GKTDVAVQIISNLYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELE--TEKDFSRYGRVNYVLARRLELLREVGRLQESLEVHGDVSYTCETAGHFYLYQVMSRWEEY---------LSKV-------------KAKSGTSGDVT---------------AVSKLFPFHKYFANAP--QPIFKSQSYEEDMEIAEGCFRHINKIFTQLEEFRAFELLRSGLDRSKYLLVKEAKII 776          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78819.15550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ9_ECTSI2.230e-10174.70Aquarius intron-binding protein similar to aquariu... [more]
A0A812WMS1_SYMMI6.750e-6646.33AQR protein (Fragment) n=1 Tax=Symbiodinium microa... [more]
UPI0005298EFD8.570e-6552.21intron-binding protein aquarius-like n=1 Tax=Coliu... [more]
A0A835YIG8_9STRA9.020e-6351.32P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2C5H4_9STRA9.900e-6349.80Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI001C71CA014.640e-6250.60RNA helicase aquarius-like n=1 Tax=Parasteatoda te... [more]
A0A443SL56_9ACAR1.590e-6151.00Intron-binding protein aquarius-like protein (Frag... [more]
UPI001C9D1E7C2.180e-6152.99RNA helicase aquarius n=1 Tax=Venturia canescens T... [more]
A0A0Q3MP80_AMAAE4.600e-6151.00Uncharacterized protein n=5 Tax=Neognathae TaxID=8... [more]
V9KHE5_CALMI4.880e-6152.61Intron-binding protein aquarius-like protein (Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78819contigH-elongata_contig78819:125..2664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.8
Seed ortholog evalue4.3e-90
Seed eggNOG ortholog2880.D7FMQ9
KEGG koko:K12874
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1806@1,KOG1806@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons4
Model size756
Cds size756
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78819.15550.1prot_H-elongata_contig78819.15550.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78819 125..2664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931193.170821-CDS-H-elongata_contig78819:124..2321622931193.170821-CDS-H-elongata_contig78819:124..232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78819 125..232 -
1691679736.0706813-CDS-H-elongata_contig78819:124..2321691679736.0706813-CDS-H-elongata_contig78819:124..232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78819 125..232 -
1622931193.1969101-CDS-H-elongata_contig78819:673..10271622931193.1969101-CDS-H-elongata_contig78819:673..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78819 674..1027 -
1691679736.094269-CDS-H-elongata_contig78819:673..10271691679736.094269-CDS-H-elongata_contig78819:673..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78819 674..1027 -
1622931193.2148757-CDS-H-elongata_contig78819:1423..15921622931193.2148757-CDS-H-elongata_contig78819:1423..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78819 1424..1592 -
1691679736.1057892-CDS-H-elongata_contig78819:1423..15921691679736.1057892-CDS-H-elongata_contig78819:1423..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78819 1424..1592 -
1622931193.2274377-CDS-H-elongata_contig78819:2539..26641622931193.2274377-CDS-H-elongata_contig78819:2539..2664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78819 2540..2664 -
1691679736.1160574-CDS-H-elongata_contig78819:2539..26641691679736.1160574-CDS-H-elongata_contig78819:2539..2664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78819 2540..2664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78819.15550.1

>prot_H-elongata_contig78819.15550.1 ID=prot_H-elongata_contig78819.15550.1|Name=mRNA_H-elongata_contig78819.15550.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
GKTDVAVQAISNLYHLFPNQRTIMLAHSNAALNDLFEKISEKNIDERHLL
RLGAGERELREGTMKDFSKFGRVNYTLKRRLELLAEVQRLAESIEVEGDV
GYTCETAEYFQLFHVTSRIERFEAELEQRKTAAKVARGKAPSARDAQGKP
ESGSKDDDRVEAVAEDDGGENIEGAVKELFPFNKFFVNAPAGDSLFGGKV
EEDIEVARGCFRHIGKMFEELADYRAFELLRSHSARSDYLLTKQVSYIID
A*
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mRNA from alignment at H-elongata_contig78819:125..2664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78819.15550.1 ID=mRNA_H-elongata_contig78819.15550.1|Name=mRNA_H-elongata_contig78819.15550.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2540bp|location=Sequence derived from alignment at H-elongata_contig78819:125..2664- (Himanthalia elongata Himel1 dioecious)
GGCAAAACGGACGTGGCGGTACAAGCCATCAGCAATCTCTACCACCTGTT CCCGAATCAGAGAACCATCATGCTGGCCCACAGCAACGCGGCGCTGAACG ATCTCTTCGAAAAGATCTCCGAGAAGTGAGAGAAAGAAAAATAGCTTTTT AAAATAAAAAGAGAGCTTCCACCAACGTCGTCCGACGCGCCTGATACCGA TGCGATGTCTGCTTACCGTGAGGGGTTTGTAAGAGGGAGGAAGGGAGGGT TTTGAAGGGGTGGAATAGGAACCCCATCATCCCTTTTCTCATGTATCTGG CGGGAGAGGGTTCCGATTTTGTGGATCGTGGGTCGAACTTAATCAAACCC TCCGAACATCCACACTATATCCTATATACTTTATTACACCACACTACATC CTATATACTTTATTACACGACGAATGGTAAAGTCACGGGGACTGGTCAAT TATCGTCAGGCTCGAGTGTGTACATTACTACCCATGAGCACGAAATTGTT ACTACACGACAATATTCATGTGTGTGTGTTTATATCTATTATTTCAACAT ATAAATATGTTTCGTGTTTCTCTTTGTATCGGTGTTTGTGTGGATGTGTT TTGATTGGTCGAGGAGCCCCACCTTGCGGATGGCCCGTTGGCTGCCTCCT TAAAAACAATACGAAGTATGCCGCCAATAACAGCGTACGAGGCAGTCAAA TTATTAGTCTTATCCTTCCCCGGTGAAGCATCAGTCGGCGGGGAACTCTT TTCAAACACTCTCCGTGACACGATCGTGACGGTGGTTGATTGGTGCCGCC TCGCTTCTCACTTACCTTGCGGCATATTACGTCACGCAACGTGACGTGGT AAATGACGTAGCAGGGCCCTAATATGGCGGGTATCTCGGCCCATTATTTT ATTTTAGGGCCTAGCATAACATGGTGTTTTGGAAAATATACTAGTTTTAG AGTTGGGACGTGTCCTTGACGCGTCTGTCATGGGGTTTGACTCTTGTCAA CCATGGTCATGGTTATTAATATGACGCGATAATATTTGTATTCCGCCTTC TGCTTTCCCTGTTGGGACGCAGGAACATCGACGAGCGACATCTGCTACGC CTGGGAGCCGGTGAGCGTGAGCTCCGAGAAGGCACCATGAAAGACTTTTC CAAGTTCGGGAGGGTGAACTACACGCTAAAGCGTCGGCTGGAGCTGCTCG CGGAGGTCCAGCGGCTTGCCGAGTCGATCGAAGTCGAGGGGGTGAGGAAG TGACGCGTGTTTTTTTTTACGAAGTGGGAGAGGTTAGGTGATGAGATGGA ATGGTTCTAATCTATTTTAGAAATGGAGTTTTCTAGAGGCTTGCTCGTCG TGGAGATGTTGGGCCGGGTAACGAGAGCTGAGGGTGAAAATGTATGGCTT GGGTTTGAGTCTGAGGGTGGCAGGGAGCGATAGAGGGGGAGGGGGATATC AGGGTTGAAGGTTGTTGGGTCGTGGAAACCCCAGCTGGCGTTTTGGTCGA TCGTGGAGATGCCCTTGCCGCCTCCCTTTTACCTCGTGAGTGCTTTGAGG TCGGACGCGTTGTTGGAAGATTTGGATGTCTTAAACCGAACACTCGCATT TACCGTACATGAATCGTCCCCTCACCCGCGCCTTCAGGATGTAGGCTACA CCTGCGAGACCGCGGAATACTTCCAGCTATTCCACGTAACCTCTCGCATT GAGCGATTCGAGGCGGAGCTCGAGCAGCGCAAGACTGCTGCTAAGGTTGC TCGTGGTAAGGCTCCATCCGCCCGCGATGCCCAAGGGAAGCCAGAGAGCG GAAGCAAGGACGATGACCGAGTAGAAGCGGTCGCTGAGGACGACGGGGGG GAAAATATCGAGGGGGCCGTGAAGGAGCTGTTTCCCTTCAACAAATTCTT TGTCAACGCTCCGGCGGGAGATAGTCTGTTCGGGGGTAAGGTTGAAGAAG ATATCGAGGTCGCACGCGGCTGCTTCAGGCACATCGGAAAGGTAGGGAGG AGAGGAGGGGGGGGGGCATGTTTCATTTGGTTGTTGTTCGTCGCCTTTTT CCGACTTTAAAACGTTTTAGTTACGTATTTCGTTCTATTTTGTCATTTGT TGTCATTTGTCGTGGGGGGGGGGAAGGATCTTCTCTTTTTTGTCCTTTTT GTCCCTTATTCCTTTTCTCTCACGGCGCTAAGAAGGTGTGGATGTTCGGA GGGTTGGAATGAGTTCAAGTTTTTTTTAATTAAAAATTGTGTGTGCAAGG TATTCAGCGTTCGTACAGTTTTTGTGAGGGGGGTGGGAGGCTGGGAGGGT TCTCACCGTCGCCATCTACGTGGGGTTCCTACACCGACTGGATTCGTTTT GGGACCCGGAAACCACATCATCCTCAAAACCTCCGTCAATTCTCCTGGGG GCCATGTAATGTTGATTGCATGGCCGTCGCAGATGTTCGAAGAACTGGCG GACTACCGCGCCTTCGAGTTGCTCCGCTCGCACTCAGCTCGCAGCGACTA CCTCCTCACGAAGCAGGTTAGCTATATCATAGACGCCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig78819:125..2664-

>mRNA_H-elongata_contig78819.15550.1 ID=mRNA_H-elongata_contig78819.15550.1|Name=mRNA_H-elongata_contig78819.15550.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig78819:125..2664- (Himanthalia elongata Himel1 dioecious)
GGCAAAACGGACGTGGCGGTACAAGCCATCAGCAATCTCTACCACCTGTT
CCCGAATCAGAGAACCATCATGCTGGCCCACAGCAACGCGGCGCTGAACG
ATCTCTTCGAAAAGATCTCCGAGAAGGCAAAACGGACGTGGCGGTACAAG
CCATCAGCAATCTCTACCACCTGTTCCCGAATCAGAGAACCATCATGCTG
GCCCACAGCAACGCGGCGCTGAACGATCTCTTCGAAAAGATCTCCGAGAA
GAACATCGACGAGCGACATCTGCTACGCCTGGGAGCCGGTGAGCGTGAGC
TCCGAGAAGGCACCATGAAAGACTTTTCCAAGTTCGGGAGGGTGAACTAC
ACGCTAAAGCGTCGGCTGGAGCTGCTCGCGGAGGTCCAGCGGCTTGCCGA
GTCGATCGAAGTCGAGGGGGAACATCGACGAGCGACATCTGCTACGCCTG
GGAGCCGGTGAGCGTGAGCTCCGAGAAGGCACCATGAAAGACTTTTCCAA
GTTCGGGAGGGTGAACTACACGCTAAAGCGTCGGCTGGAGCTGCTCGCGG
AGGTCCAGCGGCTTGCCGAGTCGATCGAAGTCGAGGGGGATGTAGGCTAC
ACCTGCGAGACCGCGGAATACTTCCAGCTATTCCACGTAACCTCTCGCAT
TGAGCGATTCGAGGCGGAGCTCGAGCAGCGCAAGACTGCTGCTAAGGTTG
CTCGTGGTAAGGCTCCATCCGCCCGCGATGCCCAAGGGAAGCCAGAGAGC
GGAAGCAAGGACGATGACCGAGTAGAAGCGGTCGCTGAGGACGACGGGGG
GGAAAATATCGAGGGGGCCGTGAAGGAGCTGTTTCCCTTCAACAAATTCT
TTGTCAACGCTCCGGCGGGAGATAGTCTGTTCGGGGGTAAGGTTGAAGAA
GATATCGAGGTCGCACGCGGCTGCTTCAGGCACATCGGAAAGGATGTAGG
CTACACCTGCGAGACCGCGGAATACTTCCAGCTATTCCACGTAACCTCTC
GCATTGAGCGATTCGAGGCGGAGCTCGAGCAGCGCAAGACTGCTGCTAAG
GTTGCTCGTGGTAAGGCTCCATCCGCCCGCGATGCCCAAGGGAAGCCAGA
GAGCGGAAGCAAGGACGATGACCGAGTAGAAGCGGTCGCTGAGGACGACG
GGGGGGAAAATATCGAGGGGGCCGTGAAGGAGCTGTTTCCCTTCAACAAA
TTCTTTGTCAACGCTCCGGCGGGAGATAGTCTGTTCGGGGGTAAGGTTGA
AGAAGATATCGAGGTCGCACGCGGCTGCTTCAGGCACATCGGAAAGATGT
TCGAAGAACTGGCGGACTACCGCGCCTTCGAGTTGCTCCGCTCGCACTCA
GCTCGCAGCGACTACCTCCTCACGAAGCAGGTTAGCTATATCATAGACGC
CTAGATGTTCGAAGAACTGGCGGACTACCGCGCCTTCGAGTTGCTCCGCT
CGCACTCAGCTCGCAGCGACTACCTCCTCACGAAGCAGGTTAGCTATATC
ATAGACGCCTAG
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