mRNA_H-elongata_contig78440.15513.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78440.15513.1
Unique NamemRNA_H-elongata_contig78440.15513.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78440.15513.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 3.250e-104
Identity = 156/252 (61.90%), Postives = 184/252 (73.02%), Query Frame = 1
Query:    1 LSFGVQENSWCDARECTLWISESWRLRLINGSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTRLLQPQDRMLNKQMK*LLRGKYTAYTAAAVADPTTGKLRPLGRGMVPTWCKEACAAITPGVVKTCFKICGITVAFDGSEDNAWCMHTFGEGYRELLQKQRVAWKEAHPGVSLPPLQLLEVADGESIGTNPITAA*KEIQGRLLPLTGGKESDSDVELLEYDIDLACLGVSGGGEKEGE 756
            +SFGVQE SW D REC  WIS SW+LR  NGSII QR  ILVLDDFKCH+ E FIA L++  NT VI IPGG T LLQP DRMLNKQMK LLRGKYTAY+A+AVAD  +GKL+P  RG+V TWCK+A  +ITP  VKTCFKICG+T+A DGSED+AWC H FGE YR+LL++Q   W   HP V+LPPL+L +V  G    +NPITAA KE++G+LLP     ESDS+VE+ E           GGG+ EGE
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIIQQRLCILVLDDFKCHKGEGFIAPLKRDANTIVIFIPGGWTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKKAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVSEXXXXXXXXXXQGGGDAEGE 249          
BLAST of mRNA_H-elongata_contig78440.15513.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 2.680e-100
Identity = 156/252 (61.90%), Postives = 183/252 (72.62%), Query Frame = 1
Query:    1 LSFGVQENSWCDARECTLWISESWRLRLINGSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTRLLQPQDRMLNKQMK*LLRGKYTAYTAAAVADPTTGKLRPLGRGMVPTWCKEACAAITPGVVKTCFKICGITVAFDGSEDNAWCMHTFGEGYRELLQKQRVAWKEAHPGVSLPPLQLLEVADGESIGTNPITAA*KEIQGRLLPLTGGKESDSDVELLEYDIDLACLGVSGGGEKEGE 756
            +SFGVQE SW D REC  WIS SW+LR  NGSI+ QRP ILVLDDFKCH+DE FIA L++  NT VI IPG LT LLQP DRMLNKQMK LLR KYTAY+A+AVAD  +GKL+P  RG+V TWCKEA  + TP  VKTCF ICG+T+A DGSED+AWC H FGE YR+LL++QR  W   H  V+LPPL+L +V  G    +NPITAA KE++G+LLP     ESDS+VE+LE           GGG  EGE
Sbjct:  217 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQRAVWLAEHADVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVLEGXXXXXXXXXQGGGGAEGE 465          
BLAST of mRNA_H-elongata_contig78440.15513.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 6.270e-100
Identity = 153/251 (60.96%), Postives = 181/251 (72.11%), Query Frame = 1
Query:    1 LSFGVQENSWCDARECTLWISESWRLRLINGSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTRLLQPQDRMLNKQMK*LLRGKYTAYTAAAVADPTTGKLRPLGRGMVPTWCKEACAAITPGVVKTCFKICGITVAFDGSEDNAWCMHTFGEGYRELLQKQRVAWKEAHPGVSLPPLQLLEVADGESIGTNPITAA*KEIQGRLLPLTGGKESDSDVELLEYDIDLACLGVSGGGEKEG 753
            +SFGVQE SW D REC  WIS SW+LR  NGSI+ QRP ILVLDD KCH+ E FIA L++  NT VI IPGGLT LLQP DRMLNKQMK LLRGKYTAY+ +AVAD  +GKL+P  RG+V TWCKEA  +ITP  VK+CFKICG+T+A DGSED+AWC H FGE   +LL++Q   W   HP V+LPPL+L +V  G    +NPITAA KE++G+LLP     ESDS+VE+LE           GGG  EG
Sbjct:   98 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDVKCHKYEGFIAALKRDANTMVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSTSAVADARSGKLKPPERGVVSTWCKEAWESITPETVKSCFKICGLTLALDGSEDHAWCDHDFGEDSHDLLEEQHAVWLAEHPDVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVLEGXXXXXXXXXQGGGGAEG 345          
BLAST of mRNA_H-elongata_contig78440.15513.1 vs. uniprot
Match: A0A6H5L8W0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W0_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 3.740e-98
Identity = 149/252 (59.13%), Postives = 179/252 (71.03%), Query Frame = 1
Query:    1 LSFGVQENSWCDARECTLWISESWRLRLINGSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTRLLQPQDRMLNKQMK*LLRGKYTAYTAAAVADPTTGKLRPLGRGMVPTWCKEACAAITPGVVKTCFKICGITVAFDGSEDNAWCMHTFGEGYRELLQKQRVAWKEAHPGVSLPPLQLLEVADGESIGTNPITAA*KEIQGRLLPLTGGKESDSDVELLEYDIDLACLGVSGGGEKEGE 756
            +SFGVQE SW D REC  WIS SW+ R  NGSI+ QRP ILVLDDFKC +DE FIA L++  NT  I IPGGLT LLQP DR+LNKQMK +LRGKYTAY+A+AVAD  +GKL+P  RG+V TWC EA  +I P  VKTCFKICG+T+A DG ED+AW  H FGE YR+LL++Q   W   HP  +LPPL+L EV  G     NPIT A KE++ +L+P     ES S+VE+LE D D+  +   GGG  EGE
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKFRPNNGSIVQQRPCILVLDDFKCRKDEGFIAALKRDANTIAIFIPGGLTPLLQPLDRVLNKQMKRMLRGKYTAYSASAVADARSGKLKPPERGVVSTWCTEAWESIIPETVKTCFKICGLTLALDGREDHAWREHNFGEDYRDLLEEQHAVWLAEHPDATLPPLKLPEVPGGFDF--NPITGAQKEVEEKLMPYVAD-ESASEVEVLEGDSDVEVVEGQGGGGAEGE 249          
BLAST of mRNA_H-elongata_contig78440.15513.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 4.030e-97
Identity = 150/231 (64.94%), Postives = 174/231 (75.32%), Query Frame = 1
Query:    1 LSFGVQENSWCDARECTLWISESWRLRLINGSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTRLLQPQDRMLNKQMK*LLRGKYTAYTAAAVADPTTGKLRPLGRGMVPTWCKEACAAITPGVVKTCFKICGITVAFDGSEDNAWCMHTFGEGYRELLQKQRVAWKEAHPGVSLPPLQLLEVADGESIGTNPITAA*KEIQGRLLPLTGGKESDSDVEL 693
            +SFGVQE SWCD REC LWI +SW+LR  NGSI+ QR  ILVLDDFKCH+D+ FIA L++  NT VI IPGGLT LLQP DRMLNKQMK LLRG YTA+TA A  DP TGKL P GRG V TWCK A A+ITP   KTCFKICG+T+A DGSED+AWC+H FG+GYRELL++QRV W   HP V+LPPLQL +V   ES   N I AA KE++  LLP    +  DSD+E+
Sbjct:  337 MSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETAKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVP-AESTA-NHIEAAAKELEAGLLP----RGDDSDIEI 561          
BLAST of mRNA_H-elongata_contig78440.15513.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 5.290e-96
Identity = 149/231 (64.50%), Postives = 174/231 (75.32%), Query Frame = 1
Query:    1 LSFGVQENSWCDARECTLWISESWRLRLINGSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTRLLQPQDRMLNKQMK*LLRGKYTAYTAAAVADPTTGKLRPLGRGMVPTWCKEACAAITPGVVKTCFKICGITVAFDGSEDNAWCMHTFGEGYRELLQKQRVAWKEAHPGVSLPPLQLLEVADGESIGTNPITAA*KEIQGRLLPLTGGKESDSDVEL 693
            +SFGVQE SWCD RE  LWI +SW+LR  NGS++ QR  ILVLDDFKCH+D+ FIA L++  NT VI IPGGLT LLQP DRMLNKQMK LLRG YTA+TA A  DP TGKL P GRG V TWCK A A+ITP  VKTCFKICG+T+A DGSED+AWC+H FG+GYRELL++QRV W   HP V+LPPLQL +V   ES   N I AA KE++  LLP    +  DSD+E+
Sbjct:  330 MSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVP-AESTA-NHIEAAAKELEAGLLP----RGDDSDIEI 554          
BLAST of mRNA_H-elongata_contig78440.15513.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 5.210e-94
Identity = 140/218 (64.22%), Postives = 167/218 (76.61%), Query Frame = 1
Query:    1 LSFGVQENSWCDARECTLWISESWRLRLINGSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTRLLQPQDRMLNKQMK*LLRGKYTAYTAAAVADPTTGKLRPLGRGMVPTWCKEACAAITPGVVKTCFKICGITVAFDGSEDNAWCMHTFGEGYRELLQKQRVAWKEAHPGVSLPPLQLLEVADGESIGTNPITAA*KEIQGRLLP 654
            +SFGVQE SW D REC  W S SW+LR  NGSI+ QRP ILVLDDFKCH+DE FIA L++  NT VI IPGGLT LLQP D  LNKQMK LLRGK+TAY+++AVAD  +GKL+P  RG+V TWCKE   +ITP  VKTCFKICG+T+A DGSED+AWC H FGE YR+LL++Q   W   HP V+LPPL+L +V  G    +NPITAA KE++G+LLP
Sbjct:   62 MSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLD--LNKQMKRLLRGKHTAYSSSAVADARSGKLKPPERGIVSTWCKEEWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLP 275          
BLAST of mRNA_H-elongata_contig78440.15513.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 3.390e-93
Identity = 148/227 (65.20%), Postives = 168/227 (74.01%), Query Frame = 1
Query:   10 GVQENSWCDARECTLWISESWRLRLINGSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTRLLQPQDRMLNKQMK*LLRGKYTAYTAAAVADPTTGKLRPLGRGMVPTWCKEACAAITPGVVKTCFKICGITVAFDGSEDNAWCMHTFGEGYRELLQKQRVAWKEAHPGVSLPPLQLLEVADGESIGTNPITAA*KEIQGRLLPLTGGKESDSDVE 690
            GVQE SWCD REC LWI +SW+LR  NGSI+ QR  ILVLDDFKCH+D+ FIA L K  NT VI IPGGLT LLQP DRMLNKQMK LLRG YTA TA A  DP TG L P GRG V TWCK A A+ITP  VKTCFKICG+T+A DGSED+AWC+H FG+GYRELL++QRV W   HP V+LP LQL +V   ES   N I AA KE++  LLP   G +SD ++E
Sbjct:  370 GVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTANTAKAARDPKTGNLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPTLQLPKVP-AESTA-NHIEAAAKELEAGLLPC--GDDSDIEIE 592          
BLAST of mRNA_H-elongata_contig78440.15513.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 5.820e-92
Identity = 152/285 (53.33%), Postives = 179/285 (62.81%), Query Frame = 1
Query:    1 LSFGVQENSWCDARECTLWISESWRLRLINGSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTRLLQPQDRMLNKQMK*LLRGKYTAYTAAAVADPTTGKLRPLGRGMVPTWCKEACAAITPGVVKTCFKICGITVAFDGSEDNAWCMHTFGEGYRELLQKQRVAWKEAHPGVSLPPLQLLEVADGE---------------------------------SIGTNPITAA*KEIQGRLLPLTGGKESDSDVELLEYDIDLACLGVSGGGEKEGE 756
            +SFGVQE SW D REC  W S SW+LR  NGSI+ QRP ILVLDDFKCH+DE FIA L++  NT VI IPGGLT LLQP DRMLNKQ K LLR KYTAY+A+A  D  +GKL+P  RG+V TWCK A  +ITP  VKTCFKICG+T+A DGSED+AWC H FGE YR+LL++Q   W   HP V+LPPL+L +V                                        +NPI AA KE++G+LLP     ESDS+VE+LE           GGG  EGE
Sbjct:  151 MSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASAT-DARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDSNPIMAAQKEVEGKLLPYVPD-ESDSEVEVLEGXXXXXXXXXQGGGGAEGE 433          
BLAST of mRNA_H-elongata_contig78440.15513.1 vs. uniprot
Match: A0A6H5JN68_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN68_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 5.400e-89
Identity = 154/298 (51.68%), Postives = 182/298 (61.07%), Query Frame = 1
Query:    1 LSFGVQENSWCDAREC-----------------------------------------TLWISESWR-----LRLINGSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTRLLQPQDRMLNKQMK*LLRGKYTAYTAAAVADPTTGKLRPLGRGMVPTWCKEACAAITPGVVKTCFKICGITVAFDGSEDNAWCMHTFGEGYRELLQKQRVAWKEAHPGVSLPPLQLLEVADGESIGTNPITAA*KEIQGRLLPLTGGKESDSDVELLEYDIDLACLGVSGGGEKEGE 756
            +SFGVQE SW D REC                                         + W  E+W       R  NGSI+ QRP ILVLDDF+CH+DE FIA L +  NT VI IPGGLT L  P DRMLNKQMK LLRGKYTAY+A+AVAD  +GKL+P  RG+V TWCKEA  +ITP  VKTCFKICG+T+A DGSED+AWC H FGE YR+LL++Q   W   HP V+LPPL+L +V  G    +NPITAA KE++G+LLP     ESDS+VE+LE           GGG  EGE
Sbjct:  345 MSFGVQEKSWSDQRECNGARASWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGVVSTWCKEAWESTPETXRPNNGSIVQQRPCILVLDDFRCHKDEGFIAALNRDPNTIVIFIPGGLTPLFHPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVLEGXXXXXXXXXQGGGGAEGE 639          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78440.15513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBJ7_9PHAE3.250e-10461.90DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE2.680e-10061.90DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQK9_9PHAE6.270e-10060.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L8W0_9PHAE3.740e-9859.13DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE4.030e-9764.94DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE5.290e-9664.50DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8R4_9PHAE5.210e-9464.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KYG9_9PHAE3.390e-9365.20DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE5.820e-9253.33DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JN68_9PHAE5.400e-8951.68DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78440contigH-elongata_contig78440:1955..2710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size756
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78440.15513.1prot_H-elongata_contig78440.15513.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78440 2309..2581 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.1403372-UTR-H-elongata_contig78440:1954..23081622931189.1403372-UTR-H-elongata_contig78440:1954..2308Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78440 1955..2308 +
1691679734.361693-UTR-H-elongata_contig78440:1954..23081691679734.361693-UTR-H-elongata_contig78440:1954..2308Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78440 1955..2308 +
1622931189.1714225-UTR-H-elongata_contig78440:2581..27101622931189.1714225-UTR-H-elongata_contig78440:2581..2710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78440 2582..2710 +
1691679734.383438-UTR-H-elongata_contig78440:2581..27101691679734.383438-UTR-H-elongata_contig78440:2581..2710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78440 2582..2710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.1545835-CDS-H-elongata_contig78440:2308..25811622931189.1545835-CDS-H-elongata_contig78440:2308..2581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78440 2309..2581 +
1691679734.3730657-CDS-H-elongata_contig78440:2308..25811691679734.3730657-CDS-H-elongata_contig78440:2308..2581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78440 2309..2581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78440.15513.1

>prot_H-elongata_contig78440.15513.1 ID=prot_H-elongata_contig78440.15513.1|Name=mRNA_H-elongata_contig78440.15513.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MVPTWCKEACAAITPGVVKTCFKICGITVAFDGSEDNAWCMHTFGEGYRE
LLQKQRVAWKEAHPGVSLPPLQLLEVADGESIGTNPITAA*
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mRNA from alignment at H-elongata_contig78440:1955..2710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78440.15513.1 ID=mRNA_H-elongata_contig78440.15513.1|Name=mRNA_H-elongata_contig78440.15513.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=756bp|location=Sequence derived from alignment at H-elongata_contig78440:1955..2710+ (Himanthalia elongata Himel1 dioecious)
TTGTCGTTTGGTGTGCAGGAGAATAGCTGGTGTGACGCGCGGGAGTGCAC CCTTTGGATCTCGGAGAGCTGGAGGCTTCGCCTCATCAACGGAAGTATCA TCACGCAGCGCCCGAGCATCCTGGTGTTGGACGACTTCAAGTGCCACCGT GACGAGGCCTTCATCGCTGACCTCCGAAAGAGGTGCAACACCAGCGTTAT CCTGATCCCGGGCGGGTTGACTCGTCTCCTTCAGCCGCAGGACCGCATGC TCAACAAGCAGATGAAGTAGCTACTGCGGGGGAAGTACACCGCCTATACC GCCGCAGCGGTTGCCGACCCAACTACGGGCAAGCTAAGGCCGCTGGGCCG TGGGATGGTGCCCACGTGGTGCAAAGAGGCGTGCGCAGCCATCACCCCCG GCGTGGTCAAGACTTGCTTCAAGATCTGCGGTATTACGGTTGCGTTTGAC GGCAGCGAGGACAACGCCTGGTGCATGCACACCTTCGGTGAGGGCTACCG CGAGCTGCTCCAGAAGCAGCGCGTTGCGTGGAAGGAAGCACACCCCGGCG TTTCGCTGCCCCCGCTCCAGCTACTAGAGGTAGCCGACGGCGAGTCGATC GGCACCAACCCCATTACGGCTGCATAGAAGGAGATTCAAGGACGTCTGCT ACCTCTTACCGGGGGGAAGGAAAGTGACAGCGATGTGGAGCTGCTGGAAT ATGATATCGATCTAGCGTGCTTGGGCGTGTCGGGGGGTGGGGAGAAGGAA GGAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig78440:1955..2710+

>mRNA_H-elongata_contig78440.15513.1 ID=mRNA_H-elongata_contig78440.15513.1|Name=mRNA_H-elongata_contig78440.15513.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig78440:1955..2710+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCCCACGTGGTGCAAAGAGGCGTGCGCAGCCATCACCCCCGGCGT
GGTCAAGACTTGCTTCAAGATCTGCGGTATTACGGTTGCGTTTGACGGCA
GCGAGGACAACGCCTGGTGCATGCACACCTTCGGTGAGGGCTACCGCGAG
CTGCTCCAGAAGCAGCGCGTTGCGTGGAAGGAAGCACACCCCGGCGTTTC
GCTGCCCCCGCTCCAGCTACTAGAGGTAGCCGACGGCGAGTCGATCGGCA
CCAACCCCATTACGGCTGCATAGATGGTGCCCACGTGGTGCAAAGAGGCG
TGCGCAGCCATCACCCCCGGCGTGGTCAAGACTTGCTTCAAGATCTGCGG
TATTACGGTTGCGTTTGACGGCAGCGAGGACAACGCCTGGTGCATGCACA
CCTTCGGTGAGGGCTACCGCGAGCTGCTCCAGAAGCAGCGCGTTGCGTGG
AAGGAAGCACACCCCGGCGTTTCGCTGCCCCCGCTCCAGCTACTAGAGGT
AGCCGACGGCGAGTCGATCGGCACCAACCCCATTACGGCTGCATAG
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