mRNA_H-elongata_contig78374.15506.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78374.15506.1
Unique NamemRNA_H-elongata_contig78374.15506.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.820e-69
Identity = 108/130 (83.08%), Postives = 126/130 (96.92%), Query Frame = 1
Query:    1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFLK 390
            +LFWSLL+I+SPPPLE+VLRH++I+T+RH+QLDRW++PQTPVKVFQ++FEFL+ENWSKLSPGV K LK++PLVPVGARLIKA RLFFRLKENLSPFMFEVPRAFGAFDSLF NLGTTQ+PTASDYA+FLK
Sbjct: 1678 ELFWSLLKIQSPPPLEVVLRHLKIITDRHSQLDRWRYPQTPVKVFQSIFEFLDENWSKLSPGVTKGLKDRPLVPVGARLIKAGRLFFRLKENLSPFMFEVPRAFGAFDSLFNNLGTTQAPTASDYAVFLK 1807          
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A7S4DJD2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJD2_HETAK)

HSP 1 Score: 147 bits (371), Expect = 4.890e-42
Identity = 75/129 (58.14%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFL 387
            QL WS L + SPPP E+VL HVR LTE  +  DRW     P  VF+AL+ FLEE W +LS     AL+  P+VP   RL+KA RLFFRLKE+L+P+MFEVPRAFGA D+L + LGTT  P A DYA FL
Sbjct:   40 QLMWSSLGLVSPPPTEVVLEHVRRLTEDPS-FDRWAHAAPPPAVFRALYTFLEERWDRLSEADRAALRAAPVVPAAGRLVKAGRLFFRLKEDLAPYMFEVPRAFGAHDALLRRLGTTDHPRAEDYARFL 167          
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.070e-39
Identity = 71/131 (54.20%), Postives = 96/131 (73.28%), Query Frame = 1
Query:    1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLK-ENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFLK 390
            Q+FWS LR+ SPPPLE VL H+  + +  N LD+W +   P KVF++L+ F+EE W KL+    K L+  PLVPV  R++KA+RLFFRL+ E+L+P+++EVPRAFGAFD LF+ LGTT +PTA DY   L+
Sbjct: 5095 QMFWSRLRVVSPPPLESVLAHLHNIAQP-NALDQWDYKDPPSKVFRSLYAFIEEEWPKLTDYAKKELQAAPLVPVRGRMVKASRLFFRLRGEDLAPYLYEVPRAFGAFDRLFRQLGTTMTPTAQDYVTLLQ 5224          
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: W7U1E4_9STRA (Ubiquitin-associated/translation elongation factor EF1B n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1E4_9STRA)

HSP 1 Score: 134 bits (336), Expect = 9.120e-34
Identity = 72/153 (47.06%), Postives = 92/153 (60.13%), Query Frame = 1
Query:    1 QLFWSLLRIKSPPPLEMVLRHVRIL---------TERHNQ---------------LDRWQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFL 387
            QL WS+L + SPP  E+V++H+  L         T R                  LDRW + + P  VFQ++F +LEE+W  L P  +  LK  P VPVG RL+KAARL+FRL ++LSPFMFEVPRAFGA+D+LF  LGT  SPT  DY+  L
Sbjct: 4832 QLCWSILGLVSPPSCELVVQHLINLCTGISMPTRTRRATMVYADDALPDDGECSALDRWTYREPPTVVFQSIFRYLEEHWEGLPPKSISLLKQLPCVPVGNRLVKAARLYFRLTQDLSPFMFEVPRAFGAYDTLFTALGTRVSPTVQDYSSLL 4984          
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A7S3QAL4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAL4_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.150e-33
Identity = 63/130 (48.46%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFPQTPVK-VFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFL 387
            Q+ +S L I SPPP+ +VLR +R LTE    LD+W +  +  + VF  LF FL++++S LSP + +AL  +PLVP+G+  +K++RLFFRL ++L+PF +EVPRAFGA+D L ++LG   SP + DYA+ L
Sbjct: 4231 QVMFSSLGIVSPPPISIVLRQIRELTEDDGILDQWSYNHSSAEQVFSDLFSFLQDHYSDLSPRIKEALAERPLVPIGSAFVKSSRLFFRLTKDLAPFFYEVPRAFGAYDILLRSLGVRDSPKSDDYAVSL 4360          
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A7S0BWH3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BWH3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.380e-32
Identity = 64/130 (49.23%), Postives = 91/130 (70.00%), Query Frame = 1
Query:    1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFP-QTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFL 387
            Q+ +S L I SPP + +VL+ VR LTE  + LD W +   +  +VF  +F FL+EN+ KLSP V + L+ + +VPVG  L+K++RLFFRL ++LSPF +EVPRAFGA+D L ++LG  +SP   DYA+ L
Sbjct:  175 QVMFSSLGISSPPSIGVVLKQVRELTEEDDSLDHWDYKFGSAEEVFSKIFFFLQENYEKLSPRVKENLQVRAIVPVGTTLVKSSRLFFRLNKDLSPFFYEVPRAFGAYDRLLRDLGVRESPHVRDYAVSL 304          
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A6U4DDX2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DDX2_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.690e-32
Identity = 63/130 (48.46%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    1 QLFWSLLRIKSPPPLEMVLRHVRIL-TERHNQLDRWQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFL 387
            Q  WS L I+SPPP    L+HVRIL T     L+RW +   P +VF+++F +L++ W  +S  V  AL   P VP+G RL + +RLFF+L  +L+PFMFEVPR FGA+D L K LG   +P+A+DYA  L
Sbjct:  827 QNLWSQLGIRSPPPRADALKHVRILITSEGGSLERWAYKDPPEEVFRSIFAYLQDQWDDISRNVKAALAELPCVPMGNRLARPSRLFFKLTVDLAPFMFEVPREFGAYDRLLKELGAKPNPSAADYAQLL 956          
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A8J5M6G6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M6G6_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.840e-32
Identity = 61/134 (45.52%), Postives = 91/134 (67.91%), Query Frame = 1
Query:    1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDR----WQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFLK 390
            ++ +S L IKSPPP + V+RH+  +T  +  +      WQF    V+VFQA+F+FL+ENW +L     + L N  ++PVG+ L+K +RLFF L ENL+P MFEVPR FGA+D+LF+++G+ ++P  SDY   L+
Sbjct: 1080 RVLYSRLGIKSPPPQDQVVRHLLSITNGNRAMSSRSLDWQFFLPMVEVFQAIFKFLQENWGELRAETQQRLANAAVIPVGSTLVKGSRLFFHLGENLAPLMFEVPRVFGAYDTLFRHMGSKEAPEVSDYIRLLR 1213          
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: W2NLY3_PHYPR (RING-type domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NLY3_PHYPR)

HSP 1 Score: 128 bits (321), Expect = 9.470e-32
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDR----WQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFLK 390
            ++ +S L IKSPPP + V++H+  +T     +      WQF    V+VFQA+F+FL+ENW +L P   K L N  ++PVG+ L+K +RLF RL ENL+P MFEVPR FGA+D+LF  +G+ ++P  SDY   L+
Sbjct: 2232 RVLYSRLGIKSPPPQDQVVKHLLTITNGDRAMSSRSLDWQFFLPMVEVFQAIFKFLQENWVELGPETQKRLANAAVIPVGSTLVKGSRLFIRLGENLAPLMFEVPRVFGAYDTLFGYMGSKEAPEVSDYIQLLR 2365          
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: W2RAY0_PHYPN (Uncharacterized protein n=38 Tax=Phytophthora TaxID=4783 RepID=W2RAY0_PHYPN)

HSP 1 Score: 128 bits (321), Expect = 9.570e-32
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDR----WQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFLK 390
            ++ +S L IKSPPP + V++H+  +T     +      WQF    V+VFQA+F+FL+ENW +L P   K L N  ++PVG+ L+K +RLF RL ENL+P MFEVPR FGA+D+LF  +G+ ++P  SDY   L+
Sbjct: 4282 RVLYSRLGIKSPPPQDQVVKHLLTITNGDRAMSSRSLDWQFFLPMVEVFQAIFKFLQENWVELGPETQKRLANAAVIPVGSTLVKGSRLFIRLGENLAPLMFEVPRVFGAYDTLFGYMGSKEAPEVSDYIQLLR 4415          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJG4_ECTSI1.820e-6983.08RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S4DJD2_HETAK4.890e-4258.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YL62_9STRA5.070e-3954.20RING-type domain-containing protein n=1 Tax=Tribon... [more]
W7U1E4_9STRA9.120e-3447.06Ubiquitin-associated/translation elongation factor... [more]
A0A7S3QAL4_9STRA3.150e-3348.46Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0BWH3_9STRA6.380e-3249.23Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A6U4DDX2_9STRA6.690e-3248.46Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A8J5M6G6_9STRA6.840e-3245.52Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
W2NLY3_PHYPR9.470e-3246.27RING-type domain-containing protein n=1 Tax=Phytop... [more]
W2RAY0_PHYPN9.570e-3246.27Uncharacterized protein n=38 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78374contigH-elongata_contig78374:1261..2435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.9
Seed ortholog evalue5.4e-60
Seed eggNOG ortholog2880.D8LJG4
EggNOG free text desc.Prokaryotic RING finger family 4
EggNOG OGs28IDA@1,2S4Z3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size390
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78374.15506.1prot_H-elongata_contig78374.15506.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78374 1261..2435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931188.5359542-CDS-H-elongata_contig78374:1260..13891622931188.5359542-CDS-H-elongata_contig78374:1260..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78374 1261..1389 +
1691679734.1478002-CDS-H-elongata_contig78374:1260..13891691679734.1478002-CDS-H-elongata_contig78374:1260..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78374 1261..1389 +
1622931188.5475688-CDS-H-elongata_contig78374:2001..21421622931188.5475688-CDS-H-elongata_contig78374:2001..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78374 2002..2142 +
1691679734.1600292-CDS-H-elongata_contig78374:2001..21421691679734.1600292-CDS-H-elongata_contig78374:2001..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78374 2002..2142 +
1622931188.5591187-CDS-H-elongata_contig78374:2315..24351622931188.5591187-CDS-H-elongata_contig78374:2315..2435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78374 2316..2435 +
1691679734.1753554-CDS-H-elongata_contig78374:2315..24351691679734.1753554-CDS-H-elongata_contig78374:2315..2435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78374 2316..2435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78374.15506.1

>prot_H-elongata_contig78374.15506.1 ID=prot_H-elongata_contig78374.15506.1|Name=mRNA_H-elongata_contig78374.15506.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFPQTPVKVFQALFE
FLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEV
PRAFGAFDSLFKNLGTTQSPTASDYAIFLK
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mRNA from alignment at H-elongata_contig78374:1261..2435+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78374.15506.1 ID=mRNA_H-elongata_contig78374.15506.1|Name=mRNA_H-elongata_contig78374.15506.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1175bp|location=Sequence derived from alignment at H-elongata_contig78374:1261..2435+ (Himanthalia elongata Himel1 dioecious)
CAGTTATTCTGGTCTTTGTTGAGGATAAAGAGTCCTCCGCCTCTGGAGAT GGTTCTTAGGCACGTCCGTATTCTCACGGAGAGACACAACCAGCTCGATC GTTGGCAGTTCCCGCAAACGCCTGTCAAGGTGGGTACAACTCCGCGCGCT TGCTCTTACGGTCACGATTACGATCACGGATGCTGGAGGTGCTCTTGAGA GAGAGAGAAAGAAAAATAATCACTCGCTTCGCAAACACAAATATTTTTAG CTCGTGCTGGTTCTTTGGGAGGAATGCGACGCGGGTACAGAGGTATCGTG GGAGGAATGCGACGCGGGTACAGAGGTATCGTGGGATGATGGGGCTGGTG AAGGTTGGCCCGCGTAGGCTTGATGCTAACGTTCTATACTGAAAGTCGCG ATGCTACGATCCAGTGTTGGATTACAATATTACAGAATATAGAGCTATAT CTCTTGTGCCTTTCGTAGCTTAGGCATGGGAGATAAAGTTGTGATTTGGT GTTACGACCGCGAAGAGAGGGTTATAGGGGTCAGAGGTGGTAAGCCAATG CCTCTAAAGGAATCGGGCTGCCTCTTGAAATCTCACCGAGCTATTATCCT GTTGTATTTTCGTATCATTCTTCCTCCCTGATGACGACGCGGACCTAAAG GACATCCGATTCGGCTTTTCATGAGATTTGATGTGATGTGATGGTATGTA ATCTTTGGGTTATGTTGTGATGGAATCGCCGCCGACGCCAGGTGTTCCAA GCCCTCTTCGAGTTCTTGGAAGAGAACTGGTCCAAGCTCAGCCCTGGGGT AGTGAAGGCTCTGAAGAACAAGCCGCTGGTACCCGTAGGCGCCAGACTCA TCAAAGCCGCCCGGCTGTTTTTCCGGCTCAAGGTCCGTGGTCTCTTGCGT TGACCCTGGAGTTCCTAGAGAGGTGGATCCGTTGAAATGATTGGGGAAGG GGGGTCAGGAGTAATTTCGTTTGTCGCAAAACCCCTCGATGGTGAATGAA ACCGCTCCCCGTTGTTTATTTTTCCTTCCCCCCCCCCCCCATCTTTGCTA TATAGGAAAACCTATCGCCCTTTATGTTTGAGGTGCCCCGCGCGTTCGGC GCGTTCGACAGCCTCTTCAAGAACCTTGGTACCACGCAGTCACCCACGGC AAGTGACTACGCCATCTTTCTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig78374:1261..2435+

>mRNA_H-elongata_contig78374.15506.1 ID=mRNA_H-elongata_contig78374.15506.1|Name=mRNA_H-elongata_contig78374.15506.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig78374:1261..2435+ (Himanthalia elongata Himel1 dioecious)
CAGTTATTCTGGTCTTTGTTGAGGATAAAGAGTCCTCCGCCTCTGGAGAT
GGTTCTTAGGCACGTCCGTATTCTCACGGAGAGACACAACCAGCTCGATC
GTTGGCAGTTCCCGCAAACGCCTGTCAAGCAGTTATTCTGGTCTTTGTTG
AGGATAAAGAGTCCTCCGCCTCTGGAGATGGTTCTTAGGCACGTCCGTAT
TCTCACGGAGAGACACAACCAGCTCGATCGTTGGCAGTTCCCGCAAACGC
CTGTCAAGGTGTTCCAAGCCCTCTTCGAGTTCTTGGAAGAGAACTGGTCC
AAGCTCAGCCCTGGGGTAGTGAAGGCTCTGAAGAACAAGCCGCTGGTACC
CGTAGGCGCCAGACTCATCAAAGCCGCCCGGCTGTTTTTCCGGCTCAAGG
TGTTCCAAGCCCTCTTCGAGTTCTTGGAAGAGAACTGGTCCAAGCTCAGC
CCTGGGGTAGTGAAGGCTCTGAAGAACAAGCCGCTGGTACCCGTAGGCGC
CAGACTCATCAAAGCCGCCCGGCTGTTTTTCCGGCTCAAGGAAAACCTAT
CGCCCTTTATGTTTGAGGTGCCCCGCGCGTTCGGCGCGTTCGACAGCCTC
TTCAAGAACCTTGGTACCACGCAGTCACCCACGGCAAGTGACTACGCCAT
CTTTCTCAAGGAAAACCTATCGCCCTTTATGTTTGAGGTGCCCCGCGCGT
TCGGCGCGTTCGACAGCCTCTTCAAGAACCTTGGTACCACGCAGTCACCC
ACGGCAAGTGACTACGCCATCTTTCTCAAG
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