mRNA_H-elongata_contig78374.15506.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI) HSP 1 Score: 236 bits (601), Expect = 1.820e-69 Identity = 108/130 (83.08%), Postives = 126/130 (96.92%), Query Frame = 1
Query: 1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFLK 390
+LFWSLL+I+SPPPLE+VLRH++I+T+RH+QLDRW++PQTPVKVFQ++FEFL+ENWSKLSPGV K LK++PLVPVGARLIKA RLFFRLKENLSPFMFEVPRAFGAFDSLF NLGTTQ+PTASDYA+FLK
Sbjct: 1678 ELFWSLLKIQSPPPLEVVLRHLKIITDRHSQLDRWRYPQTPVKVFQSIFEFLDENWSKLSPGVTKGLKDRPLVPVGARLIKAGRLFFRLKENLSPFMFEVPRAFGAFDSLFNNLGTTQAPTASDYAVFLK 1807
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A7S4DJD2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJD2_HETAK) HSP 1 Score: 147 bits (371), Expect = 4.890e-42 Identity = 75/129 (58.14%), Postives = 89/129 (68.99%), Query Frame = 1
Query: 1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFL 387
QL WS L + SPPP E+VL HVR LTE + DRW P VF+AL+ FLEE W +LS AL+ P+VP RL+KA RLFFRLKE+L+P+MFEVPRAFGA D+L + LGTT P A DYA FL
Sbjct: 40 QLMWSSLGLVSPPPTEVVLEHVRRLTEDPS-FDRWAHAAPPPAVFRALYTFLEERWDRLSEADRAALRAAPVVPAAGRLVKAGRLFFRLKEDLAPYMFEVPRAFGAHDALLRRLGTTDHPRAEDYARFL 167
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA) HSP 1 Score: 149 bits (375), Expect = 5.070e-39 Identity = 71/131 (54.20%), Postives = 96/131 (73.28%), Query Frame = 1
Query: 1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLK-ENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFLK 390
Q+FWS LR+ SPPPLE VL H+ + + N LD+W + P KVF++L+ F+EE W KL+ K L+ PLVPV R++KA+RLFFRL+ E+L+P+++EVPRAFGAFD LF+ LGTT +PTA DY L+
Sbjct: 5095 QMFWSRLRVVSPPPLESVLAHLHNIAQP-NALDQWDYKDPPSKVFRSLYAFIEEEWPKLTDYAKKELQAAPLVPVRGRMVKASRLFFRLRGEDLAPYLYEVPRAFGAFDRLFRQLGTTMTPTAQDYVTLLQ 5224
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: W7U1E4_9STRA (Ubiquitin-associated/translation elongation factor EF1B n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1E4_9STRA) HSP 1 Score: 134 bits (336), Expect = 9.120e-34 Identity = 72/153 (47.06%), Postives = 92/153 (60.13%), Query Frame = 1
Query: 1 QLFWSLLRIKSPPPLEMVLRHVRIL---------TERHNQ---------------LDRWQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFL 387
QL WS+L + SPP E+V++H+ L T R LDRW + + P VFQ++F +LEE+W L P + LK P VPVG RL+KAARL+FRL ++LSPFMFEVPRAFGA+D+LF LGT SPT DY+ L
Sbjct: 4832 QLCWSILGLVSPPSCELVVQHLINLCTGISMPTRTRRATMVYADDALPDDGECSALDRWTYREPPTVVFQSIFRYLEEHWEGLPPKSISLLKQLPCVPVGNRLVKAARLYFRLTQDLSPFMFEVPRAFGAYDTLFTALGTRVSPTVQDYSSLL 4984
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A7S3QAL4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAL4_9STRA) HSP 1 Score: 132 bits (332), Expect = 3.150e-33 Identity = 63/130 (48.46%), Postives = 93/130 (71.54%), Query Frame = 1
Query: 1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFPQTPVK-VFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFL 387
Q+ +S L I SPPP+ +VLR +R LTE LD+W + + + VF LF FL++++S LSP + +AL +PLVP+G+ +K++RLFFRL ++L+PF +EVPRAFGA+D L ++LG SP + DYA+ L
Sbjct: 4231 QVMFSSLGIVSPPPISIVLRQIRELTEDDGILDQWSYNHSSAEQVFSDLFSFLQDHYSDLSPRIKEALAERPLVPIGSAFVKSSRLFFRLTKDLAPFFYEVPRAFGAYDILLRSLGVRDSPKSDDYAVSL 4360
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A7S0BWH3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BWH3_9STRA) HSP 1 Score: 128 bits (322), Expect = 6.380e-32 Identity = 64/130 (49.23%), Postives = 91/130 (70.00%), Query Frame = 1
Query: 1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFP-QTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFL 387
Q+ +S L I SPP + +VL+ VR LTE + LD W + + +VF +F FL+EN+ KLSP V + L+ + +VPVG L+K++RLFFRL ++LSPF +EVPRAFGA+D L ++LG +SP DYA+ L
Sbjct: 175 QVMFSSLGISSPPSIGVVLKQVRELTEEDDSLDHWDYKFGSAEEVFSKIFFFLQENYEKLSPRVKENLQVRAIVPVGTTLVKSSRLFFRLNKDLSPFFYEVPRAFGAYDRLLRDLGVRESPHVRDYAVSL 304
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A6U4DDX2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DDX2_9STRA) HSP 1 Score: 128 bits (322), Expect = 6.690e-32 Identity = 63/130 (48.46%), Postives = 85/130 (65.38%), Query Frame = 1
Query: 1 QLFWSLLRIKSPPPLEMVLRHVRIL-TERHNQLDRWQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFL 387
Q WS L I+SPPP L+HVRIL T L+RW + P +VF+++F +L++ W +S V AL P VP+G RL + +RLFF+L +L+PFMFEVPR FGA+D L K LG +P+A+DYA L
Sbjct: 827 QNLWSQLGIRSPPPRADALKHVRILITSEGGSLERWAYKDPPEEVFRSIFAYLQDQWDDISRNVKAALAELPCVPMGNRLARPSRLFFKLTVDLAPFMFEVPREFGAYDRLLKELGAKPNPSAADYAQLL 956
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: A0A8J5M6G6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M6G6_9STRA) HSP 1 Score: 128 bits (322), Expect = 6.840e-32 Identity = 61/134 (45.52%), Postives = 91/134 (67.91%), Query Frame = 1
Query: 1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDR----WQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFLK 390
++ +S L IKSPPP + V+RH+ +T + + WQF V+VFQA+F+FL+ENW +L + L N ++PVG+ L+K +RLFF L ENL+P MFEVPR FGA+D+LF+++G+ ++P SDY L+
Sbjct: 1080 RVLYSRLGIKSPPPQDQVVRHLLSITNGNRAMSSRSLDWQFFLPMVEVFQAIFKFLQENWGELRAETQQRLANAAVIPVGSTLVKGSRLFFHLGENLAPLMFEVPRVFGAYDTLFRHMGSKEAPEVSDYIRLLR 1213
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: W2NLY3_PHYPR (RING-type domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NLY3_PHYPR) HSP 1 Score: 128 bits (321), Expect = 9.470e-32 Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 1
Query: 1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDR----WQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFLK 390
++ +S L IKSPPP + V++H+ +T + WQF V+VFQA+F+FL+ENW +L P K L N ++PVG+ L+K +RLF RL ENL+P MFEVPR FGA+D+LF +G+ ++P SDY L+
Sbjct: 2232 RVLYSRLGIKSPPPQDQVVKHLLTITNGDRAMSSRSLDWQFFLPMVEVFQAIFKFLQENWVELGPETQKRLANAAVIPVGSTLVKGSRLFIRLGENLAPLMFEVPRVFGAYDTLFGYMGSKEAPEVSDYIQLLR 2365
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Match: W2RAY0_PHYPN (Uncharacterized protein n=38 Tax=Phytophthora TaxID=4783 RepID=W2RAY0_PHYPN) HSP 1 Score: 128 bits (321), Expect = 9.570e-32 Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 1
Query: 1 QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDR----WQFPQTPVKVFQALFEFLEENWSKLSPGVVKALKNKPLVPVGARLIKAARLFFRLKENLSPFMFEVPRAFGAFDSLFKNLGTTQSPTASDYAIFLK 390
++ +S L IKSPPP + V++H+ +T + WQF V+VFQA+F+FL+ENW +L P K L N ++PVG+ L+K +RLF RL ENL+P MFEVPR FGA+D+LF +G+ ++P SDY L+
Sbjct: 4282 RVLYSRLGIKSPPPQDQVVKHLLTITNGDRAMSSRSLDWQFFLPMVEVFQAIFKFLQENWVELGPETQKRLANAAVIPVGSTLVKGSRLFIRLGENLAPLMFEVPRVFGAYDTLFGYMGSKEAPEVSDYIQLLR 4415 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78374.15506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig78374.15506.1 >prot_H-elongata_contig78374.15506.1 ID=prot_H-elongata_contig78374.15506.1|Name=mRNA_H-elongata_contig78374.15506.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp QLFWSLLRIKSPPPLEMVLRHVRILTERHNQLDRWQFPQTPVKVFQALFEback to top mRNA from alignment at H-elongata_contig78374:1261..2435+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig78374.15506.1 ID=mRNA_H-elongata_contig78374.15506.1|Name=mRNA_H-elongata_contig78374.15506.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1175bp|location=Sequence derived from alignment at H-elongata_contig78374:1261..2435+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig78374:1261..2435+ >mRNA_H-elongata_contig78374.15506.1 ID=mRNA_H-elongata_contig78374.15506.1|Name=mRNA_H-elongata_contig78374.15506.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig78374:1261..2435+ (Himanthalia elongata Himel1 dioecious)back to top |