mRNA_H-elongata_contig78235.15492.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78235.15492.1
Unique NamemRNA_H-elongata_contig78235.15492.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78235.15492.1 vs. uniprot
Match: A0A6H5KNM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM8_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 7.370e-13
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    7 FLRAVMITMNCSTPDATIRYTTDGSS-PNEESSAVASGSRLEWSVEGITEFKVRAFADELYRSDV 198
            FLR V ITMNCSTP+AT+RYTTDG S P + S +V  G+ ++WS EG  EF+V A AD LY+S++
Sbjct:  408 FLRTVAITMNCSTPNATVRYTTDGVSVPGDTSPSVEPGTVVQWSEEGTWEFRVVAVADGLYQSEL 472
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BLAST of mRNA_H-elongata_contig78235.15492.1 vs. uniprot
Match: D8LI16_ECTSI (NAGPA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI16_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.630e-12
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    7 FLRAVMITMNCSTPDATIRYTTDGSS-PNEESSAVASGSRLEWSVEGITEFKVRAFADELYRSDV 198
            FLR V ITMNCSTP+ T+RYTTDG S P + S +V  G+ ++WS EG  EF+V A AD LY+S++
Sbjct:  391 FLRTVAITMNCSTPNTTVRYTTDGVSVPGDTSPSVEPGTVVQWSEEGTWEFRVVAVADGLYQSEL 455
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BLAST of mRNA_H-elongata_contig78235.15492.1 vs. uniprot
Match: A0A2N2KVY0_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Candidatus Cloacimonetes bacterium HGW-Cloacimonetes-3 TaxID=2013735 RepID=A0A2N2KVY0_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 7.820e-5
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   22 MITMNCSTPDATIRYTTDGSSPNEESSAVASGSRLEWSVEGITEFKVRAF 171
            ++TM+CSTP A IRYTTDG+ P++ S+  ++ S +  +V G T FKV+AF
Sbjct: 1079 IVTMSCSTPSAQIRYTTDGTEPDQSSTLYSNSSTI--TVVGTTLFKVKAF 1126
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BLAST of mRNA_H-elongata_contig78235.15492.1 vs. uniprot
Match: UPI0018DE8781 (chitobiase/beta-hexosaminidase C-terminal domain-containing protein n=1 Tax=Desulfonatronovibrio magnus TaxID=698827 RepID=UPI0018DE8781)

HSP 1 Score: 48.5 bits (114), Expect = 7.860e-5
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   19 VMITMNCSTPDATIRYTTDGSSPNEESSAVASGSRLEWSVEGITEFKVRAFADELYRSDVKS 204
            V +T++CSTP ATI YTTDGS P + S  + SGS +   V G    K RA+ + +  S++K+
Sbjct:  961 VHVTISCSTPGATIHYTTDGSEPTQSSWDITSGSFISVPVPGT--LKARAYKEGMNPSEIKT 1020
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78235.15492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KNM8_9PHAE7.370e-1358.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI16_ECTSI2.630e-1256.92NAGPA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A2N2KVY0_9BACT7.820e-550.00Por_Secre_tail domain-containing protein n=1 Tax=C... [more]
UPI0018DE87817.860e-543.55chitobiase/beta-hexosaminidase C-terminal domain-c... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78235contigH-elongata_contig78235:1007..1210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog2880.D8LI16
Preferred nameNAGPA
KEGG koko:K01125
KEGG Pathwayko04142,map04142
GOsGO:0002790,GO:0003674,GO:0003824,GO:0003944,GO:0004553,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0005975,GO:0006464,GO:0006605,GO:0006622,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0015929,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0016798,GO:0019538,GO:0031224,GO:0031226,GO:0032940,GO:0033036,GO:0033299,GO:0033365,GO:0034613,GO:0036211,GO:0042886,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:1901564
EggNOG free text desc.N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
EggNOG OGs28JJ0@1,2QRY5@2759
EC3.1.4.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF2233
Ec32 orthologEc-04_002860.1
Exons1
Model size204
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.1843894-CDS-H-elongata_contig78235:1006..11891622931187.1843894-CDS-H-elongata_contig78235:1006..1189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78235 1007..1189 -
1691679733.6064174-CDS-H-elongata_contig78235:1006..11891691679733.6064174-CDS-H-elongata_contig78235:1006..1189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78235 1007..1189 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.1988108-UTR-H-elongata_contig78235:1189..12101622931187.1988108-UTR-H-elongata_contig78235:1189..1210Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78235 1190..1210 -
1691679733.6177719-UTR-H-elongata_contig78235:1189..12101691679733.6177719-UTR-H-elongata_contig78235:1189..1210Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78235 1190..1210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78235.15492.1prot_H-elongata_contig78235.15492.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78235 1007..1189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78235.15492.1

>prot_H-elongata_contig78235.15492.1 ID=prot_H-elongata_contig78235.15492.1|Name=mRNA_H-elongata_contig78235.15492.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MITMNCSTPDATIRYTTDGSSPNEESSAVASGSRLEWSVEGITEFKVRAF
ADELYRSDVKS
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mRNA from alignment at H-elongata_contig78235:1007..1210-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78235.15492.1 ID=mRNA_H-elongata_contig78235.15492.1|Name=mRNA_H-elongata_contig78235.15492.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig78235:1007..1210- (Himanthalia elongata Himel1 dioecious)
GACACTTTCCTCAGGGCGGTGATGATCACCATGAACTGCTCCACCCCCGA
TGCCACCATCCGCTACACGACGGACGGGTCCTCTCCCAACGAGGAGTCCT
CCGCCGTGGCCTCTGGGAGCCGGCTCGAGTGGTCCGTGGAGGGGATCACC
GAGTTCAAGGTCAGGGCCTTCGCGGACGAGCTGTACAGGAGCGACGTGAA
ATCG
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Coding sequence (CDS) from alignment at H-elongata_contig78235:1007..1210-

>mRNA_H-elongata_contig78235.15492.1 ID=mRNA_H-elongata_contig78235.15492.1|Name=mRNA_H-elongata_contig78235.15492.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig78235:1007..1210- (Himanthalia elongata Himel1 dioecious)
ATGATCACCATGAACTGCTCCACCCCCGATGCCACCATCCGCTACACGAC
GGACGGGTCCTCTCCCAACGAGGAGTCCTCCGCCGTGGCCTCTGGGAGCC
GGCTCGAGTGGTCCGTGGAGGGGATCACCGAGTTCAAGGTCAGGGCCTTC
GCGGACGAGCTGTACAGGAGCGACGTGAAATCGATGATCACCATGAACTG
CTCCACCCCCGATGCCACCATCCGCTACACGACGGACGGGTCCTCTCCCA
ACGAGGAGTCCTCCGCCGTGGCCTCTGGGAGCCGGCTCGAGTGGTCCGTG
GAGGGGATCACCGAGTTCAAGGTCAGGGCCTTCGCGGACGAGCTGTACAG
GAGCGACGTGAAATCG
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