mRNA_H-elongata_contig7815.15484.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7815.15484.1
Unique NamemRNA_H-elongata_contig7815.15484.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7815.15484.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 2.320e-48
Identity = 153/400 (38.25%), Postives = 194/400 (48.50%), Query Frame = 1 
Query: 1063 IHLDGTALTMQ--GDVRFENCSASGEGGGLYMDSTSRLTVEEAASLSFSGCTAGSQAGDNGGGMCSYGSIMTVGSNAKVSFENNYVSVEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGMYLTGMDSDDYSGEDDMTPCFTLAEGTNAIFIGNSVGEGGAYGGGVHFAIGCDVVIKGDVHFEQNTAVRAGAMYLDQSRAVISGTAIFINNTAERWGGAVMVLDSDS----GLEFNGTVVAXXXXXXXSGGVLYLENAPLVV------AEGGDIRDFGALWEGNYAGYDGGVIAVXXXXXXXXXXXXXXXXXXXXXXXXFATGESVLSWTAG-ESFDNSAASGGSLYISNSKVNLTDVRFVGDHTSSGAVIFFAGADARAINISIIAPAELVGDFAL 2223
            + L  + LT+   G  RF  CSA  +GGGLYM   S + V ++ASL F  C +GS +G+ GGG+C+Y S M+VG+   V+F  N   +E                                GG+ L  +D D    ED +  C +LAEG    F GN+V E   YGGG+ + +GC   I G V F  N   RA                           GAV V+DS      GL        XXXXXXX     Y+ N  + V      A GGD    GA W GN AGYDGGVIAV                        F  GES +SW+ G ES++NSAASGG++Y+S+S  NLTD+R  GDHT SGA +FFAGADARA+N++ +AP EL   FAL
Sbjct:  278 VELSASNLTISSNGRTRFRECSAGDKGGGLYMKKDSVVDVGDSASLEFQACASGSSSGNKGGGVCAYDSAMSVGAGTTVTFRENSSPIEDGGGMFAKSTTLSVDGDGAALVFTDNFSGDSGGGLTLQ-IDLD----EDVIDTCLSLAEGATMDFSGNAVTE---YGGGM-YVVGCKASIAGSVSFRGNHGKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVCVIDSREDDGLGLRLXXXXXXXXXXXXXXXXXXYVVNGDVAVVRDATAAAGGDELP-GASWVGNTAGYDGGVIAVDGGGVWLEGGLASSNSASERGGVLFGIGESNVSWSGGGESWNNSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEELEATFAL 667
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BLAST of mRNA_H-elongata_contig7815.15484.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 5.220e-24
Identity = 101/260 (38.85%), Postives = 126/260 (48.46%), Query Frame = 1 
Query: 1483 CFTLAEGTNAIFIGNSVGEGGAYGGGVHFAIGCDVVIKGDVHFEQNTAVRAGAMYLDQSRAVISGTAIFINNTAERWGGAVMVLDS--DSGLEFN----------GTVVAXXXXXXXSGGVLYLENAPLVVAEGGDIRDFGALWEGNYAGYDGGVIAVXXXXXXXXXXXXXXXXXXXXXXXXFATGESVLSWTAG-ESFDNSAASGGSLYISNSKVNLTDVRFVGDHTSSGAVIFFAGADARAINISIIAPAELVGDFAL 2223
            C  LAEG    F GN+  E   YGGG+ + +GC   + G V F  N   RA                            AV V+DS  D+GL                  XXXXXXX+G V  + +A   V  GG+    GA W GN AGYD    AV                        F  GES +SW+ G ES++NSAASGG++Y+S+S  NLTD+R  GDHT SGA +FFAGADARA+N++ +AP EL   FAL
Sbjct:  413 CLFLAEGATMDFSGNAATE---YGGGM-YVVGCKASVAGSVSFRGNHGERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVYVVDSREDNGLGLRMXXXXXXXXXXXXXXXXXXXXXNGDVTVVRDATAAV--GGEELP-GASWVGNTAGYDXXXXAVDGGGVWLEGGLASSNSASERGGVLFGIGESNVSWSGGGESWNNSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEELEATFAL 665
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7815.15484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUJ2_9PHAE2.320e-4838.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTT7_ECTSI5.220e-2438.85Polymorphic Outer membrane protein G/I family n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7815contigH-elongata_contig7815:7188..9578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2224
Cds size1134
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7815.15484.1prot_H-elongata_contig7815.15484.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7815 7188..8321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.1870368-CDS-H-elongata_contig7815:7187..83211622931186.1870368-CDS-H-elongata_contig7815:7187..8321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7815 7188..8321 -
1691679733.364211-CDS-H-elongata_contig7815:7187..83211691679733.364211-CDS-H-elongata_contig7815:7187..8321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7815 7188..8321 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.2045794-UTR-H-elongata_contig7815:8321..83531622931186.2045794-UTR-H-elongata_contig7815:8321..8353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7815 8322..8353 -
1691679733.3744354-UTR-H-elongata_contig7815:8321..83531691679733.3744354-UTR-H-elongata_contig7815:8321..8353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7815 8322..8353 -
1622931186.224132-UTR-H-elongata_contig7815:8507..92481622931186.224132-UTR-H-elongata_contig7815:8507..9248Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7815 8508..9248 -
1691679733.3847053-UTR-H-elongata_contig7815:8507..92481691679733.3847053-UTR-H-elongata_contig7815:8507..9248Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7815 8508..9248 -
1622931186.2420716-UTR-H-elongata_contig7815:9262..95781622931186.2420716-UTR-H-elongata_contig7815:9262..9578Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7815 9263..9578 -
1691679733.4038293-UTR-H-elongata_contig7815:9262..95781691679733.4038293-UTR-H-elongata_contig7815:9262..9578Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7815 9263..9578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7815.15484.1

>prot_H-elongata_contig7815.15484.1 ID=prot_H-elongata_contig7815.15484.1|Name=mRNA_H-elongata_contig7815.15484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=378bp
MQGDVRFENCSASGEGGGLYMDSTSRLTVEEAASLSFSGCTAGSQAGDNG
GGMCSYGSIMTVGSNAKVSFENNYVSVEGDGGGLYAKSTSITVNNRSNIS
FINNYAGDDGGGMYLTGMDSDDYSGEDDMTPCFTLAEGTNAIFIGNSVGE
GGAYGGGVHFAIGCDVVIKGDVHFEQNTAVRAGAMYLDQSRAVISGTAIF
INNTAERWGGAVMVLDSDSGLEFNGTVVAQNNSAGRSGGVLYLENAPLVV
AEGGDIRDFGALWEGNYAGYDGGVIAVDGGEFHLGGGIAKSNRAAQRGGV
IFATGESVLSWTAGESFDNSAASGGSLYISNSKVNLTDVRFVGDHTSSGA
VIFFAGADARAINISIIAPAELVGDFAL
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mRNA from alignment at H-elongata_contig7815:7188..9578-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7815.15484.1 ID=mRNA_H-elongata_contig7815.15484.1|Name=mRNA_H-elongata_contig7815.15484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2391bp|location=Sequence derived from alignment at H-elongata_contig7815:7188..9578- (Himanthalia elongata Himel1 dioecious)
GTCTCGGGTCAGGTTTGAAGAGTGGGATGGAACCGTCGAAAACATCAACA
ACGCAATGCGATTACAGAATTTCCCTACATTATATAGCCAGTGGATTGCT
GGACTCGTGTTTGTCGTGGGTGCCCAACCCGACCATATAACCCGAACCAC
ATCATCATCCCAGCTGATATCGAGATTCTAGATCGACGCTAGCCCGAGGT
TCCAGATCAAAACCAACGCGAGGTCCCAGTGGCCTTCGGGCAACGGTCGG
GTGAGCGAACCTGAATCTGCCTCGGACAGCATTTCTTTGTCCAATCAGAC
GTTAGTTCTAAACTCTTCAATTCAACAAAACAAATCGGCCGAGTAAAGAA
AAAATTCCGTCGGGCGCATTTAACCATCGAGCACACGACTTGATATTAAA
CTGAAAAATAGTGTCCGTACGACCGCCAATTAATTGATGGGCATTTAGCG
ATCACCGAGGGAAAAGCTTGGAGAAGACACGTAAGGTGCCAGTGAACATC
AGGAAAGGAAAGAGACGGGTCGCAGCAGCTAAGTTAAGGTGGAATCTGGG
TCCTGATGAGGGCTTCCTTAGCTTCGGCGTGGTGGGCTCTTGCTGTGACT
GTTGCTCTTTCCACATACGGGAAAAATTATTCTCTCGCGCAGTCTTCCAC
TCAGCAGAATGCGTCTTGTTCAAGGACAGTTCAGCTGACAGTCAATGTGA
CCTCATCGCTCGATGTCTTATACTCTTCCCTTCTAGAGGCAGGGGAATGT
GGCATTTCCAGTGAACCCTCTATCTCGGTTGAATGGGACGGAACAGTCGA
AATCGATCATCCCATTATCGTTCCAGATAGTGTGGAATTACGGGTGCAGG
GCGGTGGATACGTGCATGGGACTAATGACATCATCAGCCGCAGCAGCAGC
AGCAGTGATGATAGCGGGAGCACATCCGTAGGAGATTCCGTGGTAAGAGG
CGACGGTAGCGTTCACCTGTTTACGGTGGAGCCCAATGGGAAGCTCTACA
TATTCGGAATGACTCTCCAAAACGGCTGGGGCGGAGATGACGGAGGCGGT
GGAATATTCGCCAATGCAGGCGCAACGGTGATCGGGGAGAGTTGCTTGTG
GGACTCTCTCTCGACTTTCGGCTACGGAGGAGGAGCTATAGCTGCAATAG
ATGTGGCTAATCTGACGCTGAGAGGAACTAATATTTTTTCGGGCTGCTCG
TCAAATTCAAGCGACTCCAACGGAGGGGCAATCCATCTCGATGGTACAGC
GCTCACGATGCAGGGGGACGTGCGCTTCGAAAACTGCAGCGCTAGCGGCG
AGGGTGGTGGGCTATACATGGATTCCACTTCGCGACTTACAGTTGAGGAG
GCAGCGTCACTCTCGTTCTCCGGCTGCACTGCGGGATCACAGGCTGGGGA
CAATGGTGGAGGTATGTGTTCTTACGGCTCCATCATGACGGTCGGCTCCA
ACGCTAAGGTTTCGTTCGAGAATAATTATGTGTCCGTTGAGGGCGATGGA
GGCGGCCTTTACGCCAAGAGCACCTCTATCACCGTAAACAACAGATCCAA
TATATCTTTCATTAATAATTACGCGGGGGATGATGGCGGTGGCATGTATC
TGACTGGGATGGACTCCGATGATTACAGTGGGGAGGATGACATGACCCCG
TGCTTCACACTGGCGGAGGGTACCAACGCCATTTTCATTGGGAACTCCGT
AGGCGAGGGTGGTGCCTACGGTGGGGGAGTTCACTTCGCCATCGGTTGCG
ATGTTGTGATCAAGGGTGACGTTCACTTTGAGCAGAATACCGCGGTACGA
GCGGGTGCGATGTACTTGGATCAGTCCAGGGCTGTCATCTCAGGCACGGC
AATTTTCATCAACAACACAGCGGAGAGATGGGGAGGCGCGGTGATGGTGC
TCGACTCTGACAGCGGCTTGGAATTCAACGGCACTGTCGTCGCCCAAAAT
AACTCCGCTGGTCGAAGTGGAGGTGTACTATACCTGGAGAACGCCCCCTT
GGTCGTGGCTGAGGGTGGTGATATAAGAGATTTCGGAGCACTCTGGGAGG
GGAATTACGCTGGCTACGATGGAGGCGTCATCGCTGTCGATGGTGGCGAA
TTTCATCTGGGGGGTGGAATTGCGAAATCAAACCGCGCAGCGCAGCGCGG
GGGCGTAATCTTTGCCACCGGTGAAAGCGTCCTCTCATGGACGGCCGGGG
AATCATTTGATAACTCAGCCGCCTCCGGGGGGTCGTTGTATATCAGCAAT
AGCAAAGTCAACCTCACCGACGTTCGATTCGTGGGAGATCATACCTCGTC
GGGGGCAGTGATATTTTTTGCCGGTGCAGACGCACGTGCTATCAATATCA
GTATCATAGCGCCGGCGGAGTTGGTGGGTGACTTTGCGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig7815:7188..9578-

>mRNA_H-elongata_contig7815.15484.1 ID=mRNA_H-elongata_contig7815.15484.1|Name=mRNA_H-elongata_contig7815.15484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2268bp|location=Sequence derived from alignment at H-elongata_contig7815:7188..9578- (Himanthalia elongata Himel1 dioecious)
ATGCAGGGGGACGTGCGCTTCGAAAACTGCAGCGCTAGCGGCGAGGGTGG
TGGGCTATACATGGATTCCACTTCGCGACTTACAGTTGAGGAGGCAGCGT
CACTCTCGTTCTCCGGCTGCACTGCGGGATCACAGGCTGGGGACAATGGT
GGAGGTATGTGTTCTTACGGCTCCATCATGACGGTCGGCTCCAACGCTAA
GGTTTCGTTCGAGAATAATTATGTGTCCGTTGAGGGCGATGGAGGCGGCC
TTTACGCCAAGAGCACCTCTATCACCGTAAACAACAGATCCAATATATCT
TTCATTAATAATTACGCGGGGGATGATGGCGGTGGCATGTATCTGACTGG
GATGGACTCCGATGATTACAGTGGGGAGGATGACATGACCCCGTGCTTCA
CACTGGCGGAGGGTACCAACGCCATTTTCATTGGGAACTCCGTAGGCGAG
GGTGGTGCCTACGGTGGGGGAGTTCACTTCGCCATCGGTTGCGATGTTGT
GATCAAGGGTGACGTTCACTTTGAGCAGAATACCGCGGTACGAGCGGGTG
CGATGTACTTGGATCAGTCCAGGGCTGTCATCTCAGGCACGGCAATTTTC
ATCAACAACACAGCGGAGAGATGGGGAGGCGCGGTGATGGTGCTCGACTC
TGACAGCGGCTTGGAATTCAACGGCACTGTCGTCGCCCAAAATAACTCCG
CTGGTCGAAGTGGAGGTGTACTATACCTGGAGAACGCCCCCTTGGTCGTG
GCTGAGGGTGGTGATATAAGAGATTTCGGAGCACTCTGGGAGGGGAATTA
CGCTGGCTACGATGGAGGCGTCATCGCTGTCGATGGTGGCGAATTTCATC
TGGGGGGTGGAATTGCGAAATCAAACCGCGCAGCGCAGCGCGGGGGCGTA
ATCTTTGCCACCGGTGAAAGCGTCCTCTCATGGACGGCCGGGGAATCATT
TGATAACTCAGCCGCCTCCGGGGGGTCGTTGTATATCAGCAATAGCAAAG
TCAACCTCACCGACGTTCGATTCGTGGGAGATCATACCTCGTCGGGGGCA
GTGATATTTTTTGCCGGTGCAGACGCACGTGCTATCAATATCAGTATCAT
AGCGCCGGCGGAGTTGGTGGGTGACTTTGCGCTGATGCAGGGGGACGTGC
GCTTCGAAAACTGCAGCGCTAGCGGCGAGGGTGGTGGGCTATACATGGAT
TCCACTTCGCGACTTACAGTTGAGGAGGCAGCGTCACTCTCGTTCTCCGG
CTGCACTGCGGGATCACAGGCTGGGGACAATGGTGGAGGTATGTGTTCTT
ACGGCTCCATCATGACGGTCGGCTCCAACGCTAAGGTTTCGTTCGAGAAT
AATTATGTGTCCGTTGAGGGCGATGGAGGCGGCCTTTACGCCAAGAGCAC
CTCTATCACCGTAAACAACAGATCCAATATATCTTTCATTAATAATTACG
CGGGGGATGATGGCGGTGGCATGTATCTGACTGGGATGGACTCCGATGAT
TACAGTGGGGAGGATGACATGACCCCGTGCTTCACACTGGCGGAGGGTAC
CAACGCCATTTTCATTGGGAACTCCGTAGGCGAGGGTGGTGCCTACGGTG
GGGGAGTTCACTTCGCCATCGGTTGCGATGTTGTGATCAAGGGTGACGTT
CACTTTGAGCAGAATACCGCGGTACGAGCGGGTGCGATGTACTTGGATCA
GTCCAGGGCTGTCATCTCAGGCACGGCAATTTTCATCAACAACACAGCGG
AGAGATGGGGAGGCGCGGTGATGGTGCTCGACTCTGACAGCGGCTTGGAA
TTCAACGGCACTGTCGTCGCCCAAAATAACTCCGCTGGTCGAAGTGGAGG
TGTACTATACCTGGAGAACGCCCCCTTGGTCGTGGCTGAGGGTGGTGATA
TAAGAGATTTCGGAGCACTCTGGGAGGGGAATTACGCTGGCTACGATGGA
GGCGTCATCGCTGTCGATGGTGGCGAATTTCATCTGGGGGGTGGAATTGC
GAAATCAAACCGCGCAGCGCAGCGCGGGGGCGTAATCTTTGCCACCGGTG
AAAGCGTCCTCTCATGGACGGCCGGGGAATCATTTGATAACTCAGCCGCC
TCCGGGGGGTCGTTGTATATCAGCAATAGCAAAGTCAACCTCACCGACGT
TCGATTCGTGGGAGATCATACCTCGTCGGGGGCAGTGATATTTTTTGCCG
GTGCAGACGCACGTGCTATCAATATCAGTATCATAGCGCCGGCGGAGTTG
GTGGGTGACTTTGCGCTG
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