prot_H-elongata_contig7815.15484.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7815.15484.1
Unique Nameprot_H-elongata_contig7815.15484.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length378
Homology
BLAST of mRNA_H-elongata_contig7815.15484.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 4.720e-51
Identity = 150/387 (38.76%), Postives = 188/387 (48.58%), Query Frame = 0
Query:    3 GDVRFENCSASGEGGGLYMDSTSRLTVEEAASLSFSGCTAGSQAGDNGGGMCSYGSIMTVGSNAKVSFENNYVSVEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGMYLTGMDSDDYSGEDDMTPCFTLAEGTNAIFIGNSVGEGGAYGGGVHFAIGCDVVIKGDVHFEQNTAVRAGAMYLDQSRAVISGTAIFINNTAERWGGAVMVLDSDS----GLEFNGTVVAXXXXXXXSGGVLYLENAPLVV------AEGGDIRDFGALWEGNYAGYDGGVIAVXXXXXXXXXXXXXXXXXXXXXXXXFATGESVLSWTAG-ESFDNSAASGGSLYISNSKVNLTDVRFVGDHTSSGAVIFFAGADARAINISIIAPAELVGDFAL 378
            G  RF  CSA  +GGGLYM   S + V ++ASL F  C +GS +G+ GGG+C+Y S M+VG+   V+F  N   +E                                GG+ L  +D D    ED +  C +LAEG    F GN+V E   YGGG+ + +GC   I G V F  N   RA                           GAV V+DS      GL        XXXXXXX     Y+ N  + V      A GGD    GA W GN AGYDGGVIAV                        F  GES +SW+ G ES++NSAASGG++Y+S+S  NLTD+R  GDHT SGA +FFAGADARA+N++ +AP EL   FAL
Sbjct:  291 GRTRFRECSAGDKGGGLYMKKDSVVDVGDSASLEFQACASGSSSGNKGGGVCAYDSAMSVGAGTTVTFRENSSPIEDGGGMFAKSTTLSVDGDGAALVFTDNFSGDSGGGLTLQ-IDLD----EDVIDTCLSLAEGATMDFSGNAVTE---YGGGM-YVVGCKASIAGSVSFRGNHGKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVCVIDSREDDGLGLRLXXXXXXXXXXXXXXXXXXYVVNGDVAVVRDATAAAGGDELP-GASWVGNTAGYDGGVIAVDGGGVWLEGGLASSNSASERGGVLFGIGESNVSWSGGGESWNNSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEELEATFAL 667          
BLAST of mRNA_H-elongata_contig7815.15484.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 9.060e-26
Identity = 101/260 (38.85%), Postives = 126/260 (48.46%), Query Frame = 0
Query:  132 CFTLAEGTNAIFIGNSVGEGGAYGGGVHFAIGCDVVIKGDVHFEQNTAVRAGAMYLDQSRAVISGTAIFINNTAERWGGAVMVLDS--DSGLEFN----------GTVVAXXXXXXXSGGVLYLENAPLVVAEGGDIRDFGALWEGNYAGYDGGVIAVXXXXXXXXXXXXXXXXXXXXXXXXFATGESVLSWTAG-ESFDNSAASGGSLYISNSKVNLTDVRFVGDHTSSGAVIFFAGADARAINISIIAPAELVGDFAL 378
            C  LAEG    F GN+  E   YGGG+ + +GC   + G V F  N   RA                            AV V+DS  D+GL                  XXXXXXX+G V  + +A   V  GG+    GA W GN AGYD    AV                        F  GES +SW+ G ES++NSAASGG++Y+S+S  NLTD+R  GDHT SGA +FFAGADARA+N++ +AP EL   FAL
Sbjct:  413 CLFLAEGATMDFSGNAATE---YGGGM-YVVGCKASVAGSVSFRGNHGERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVYVVDSREDNGLGLRMXXXXXXXXXXXXXXXXXXXXXNGDVTVVRDATAAV--GGEELP-GASWVGNTAGYDXXXXAVDGGGVWLEGGLASSNSASERGGVLFGIGESNVSWSGGGESWNNSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEELEATFAL 665          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7815.15484.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUJ2_9PHAE4.720e-5138.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTT7_ECTSI9.060e-2638.85Polymorphic Outer membrane protein G/I family n=1 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 95..114
e-value: 0.0032
score: 15.3
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 4..252

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7815contigH-elongata_contig7815:7188..8321 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7815.15484.1mRNA_H-elongata_contig7815.15484.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7815 7188..9578 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7815.15484.1 ID=prot_H-elongata_contig7815.15484.1|Name=mRNA_H-elongata_contig7815.15484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=378bp
MQGDVRFENCSASGEGGGLYMDSTSRLTVEEAASLSFSGCTAGSQAGDNG
GGMCSYGSIMTVGSNAKVSFENNYVSVEGDGGGLYAKSTSITVNNRSNIS
FINNYAGDDGGGMYLTGMDSDDYSGEDDMTPCFTLAEGTNAIFIGNSVGE
GGAYGGGVHFAIGCDVVIKGDVHFEQNTAVRAGAMYLDQSRAVISGTAIF
INNTAERWGGAVMVLDSDSGLEFNGTVVAQNNSAGRSGGVLYLENAPLVV
AEGGDIRDFGALWEGNYAGYDGGVIAVDGGEFHLGGGIAKSNRAAQRGGV
IFATGESVLSWTAGESFDNSAASGGSLYISNSKVNLTDVRFVGDHTSSGA
VIFFAGADARAINISIIAPAELVGDFAL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence