mRNA_H-elongata_contig77436.15422.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 4.920e-23 Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 1
Query: 1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 177
YPNMAR ARVLLSVPASSAVLERDFSTAG L+TG+RSRL+ YVEM LFLN NQEYIP+
Sbjct: 724 YPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPM 782
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 2.740e-13 Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query: 1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIP 174
YP +ARVARV+ PAS+AVLERDFS AG ++T SRS + +YVEM +FL+ N + IP
Sbjct: 618 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIP 675
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 1.640e-12 Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRL-AGEYVEMTLFLNENQEYIP 174
YP +ARVARV+ PAS+AVLERDFS AG ++T SR + + YVEM LFL+ N + IP
Sbjct: 6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIP 64
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 2.480e-10 Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 19 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 177
VARVL S+P+SSA +ERDF TAG ++T RS LA V+MT FLN N+ Y+ I
Sbjct: 42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYVDI 94
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM) HSP 1 Score: 58.2 bits (139), Expect = 2.360e-9 Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 19 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 177
VARV+ S+P+SSA +ERDF TAG ++T R+ LA V+MT FLN N+ Y+ I
Sbjct: 10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYVNI 62
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93) HSP 1 Score: 60.1 bits (144), Expect = 2.390e-9 Identity = 28/53 (52.83%), Postives = 42/53 (79.25%), Query Frame = 1
Query: 1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNEN 159
+P++AR+AR +LS+PA+SA ERDFSTAG +++ RS+L+ E V+ LFL+ N
Sbjct: 181 FPSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: UPI001469E3E5 (zinc finger BED domain-containing protein DAYSLEEPER-like n=2 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI001469E3E5) HSP 1 Score: 57.8 bits (138), Expect = 7.340e-9 Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNEN 159
+PN+A +AR +LS+PASSA ERDFSTAG +++ RS+L V+ LFL+ N
Sbjct: 109 FPNVAHIARSILSIPASSAASERDFSTAGFVVSERRSQLKPATVDDILFLHSN 161
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A819SCB8_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A819SCB8_9BILA) HSP 1 Score: 57.8 bits (138), Expect = 9.800e-9 Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEY 168
YP +A++A+ + SVPASSA +ER+FS AG+++T RSRL+ E V +F N ++Y
Sbjct: 119 YPRLAKIAKRVFSVPASSAGVEREFSLAGNIITKKRSRLSPETVNDIIFQNSFEKY 174
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: W2PE29_PHYPN (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PE29_PHYPN) HSP 1 Score: 57.0 bits (136), Expect = 1.790e-8 Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 19 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 177
VARVL S+P+SSA +ERDF AG ++T RS LA V+M FLN N+ Y+ I
Sbjct: 71 VARVLFSMPSSSAQIERDFGAAGRMVTPQRSSLAPYNVDMATFLNCNRSYVDI 123
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A080YX20_PHYPR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080YX20_PHYPR) HSP 1 Score: 56.6 bits (135), Expect = 2.100e-8 Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 177
Y + +V R+L ++P SSA +ERDF TAG L+T R +A V+M+ FLN N++++ +
Sbjct: 96 YTFLPQVVRILFAIPTSSAQIERDFGTAGQLVTPQRGSIAPYNVDMSAFLNCNRQFVDV 154 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77436.15422.1 >prot_H-elongata_contig77436.15422.1 ID=prot_H-elongata_contig77436.15422.1|Name=mRNA_H-elongata_contig77436.15422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp MARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENback to top mRNA from alignment at H-elongata_contig77436:1242..1418+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77436.15422.1 ID=mRNA_H-elongata_contig77436.15422.1|Name=mRNA_H-elongata_contig77436.15422.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig77436:1242..1418+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77436:1242..1418+ >mRNA_H-elongata_contig77436.15422.1 ID=mRNA_H-elongata_contig77436.15422.1|Name=mRNA_H-elongata_contig77436.15422.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig77436:1242..1418+ (Himanthalia elongata Himel1 dioecious)back to top |