mRNA_H-elongata_contig77436.15422.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77436.15422.1
Unique NamemRNA_H-elongata_contig77436.15422.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.920e-23
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 177
            YPNMAR ARVLLSVPASSAVLERDFSTAG L+TG+RSRL+  YVEM LFLN NQEYIP+
Sbjct:  724 YPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPM 782          
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.740e-13
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIP 174
            YP +ARVARV+   PAS+AVLERDFS AG ++T SRS +  +YVEM +FL+ N + IP
Sbjct:  618 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIP 675          
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.640e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRL-AGEYVEMTLFLNENQEYIP 174
            YP +ARVARV+   PAS+AVLERDFS AG ++T SR  + +  YVEM LFL+ N + IP
Sbjct:    6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIP 64          
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.480e-10
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   19 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 177
            VARVL S+P+SSA +ERDF TAG ++T  RS LA   V+MT FLN N+ Y+ I
Sbjct:   42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYVDI 94          
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 58.2 bits (139), Expect = 2.360e-9
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   19 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 177
            VARV+ S+P+SSA +ERDF TAG ++T  R+ LA   V+MT FLN N+ Y+ I
Sbjct:   10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYVNI 62          
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 60.1 bits (144), Expect = 2.390e-9
Identity = 28/53 (52.83%), Postives = 42/53 (79.25%), Query Frame = 1
Query:    1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNEN 159
            +P++AR+AR +LS+PA+SA  ERDFSTAG +++  RS+L+ E V+  LFL+ N
Sbjct:  181 FPSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233          
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: UPI001469E3E5 (zinc finger BED domain-containing protein DAYSLEEPER-like n=2 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI001469E3E5)

HSP 1 Score: 57.8 bits (138), Expect = 7.340e-9
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNEN 159
            +PN+A +AR +LS+PASSA  ERDFSTAG +++  RS+L    V+  LFL+ N
Sbjct:  109 FPNVAHIARSILSIPASSAASERDFSTAGFVVSERRSQLKPATVDDILFLHSN 161          
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A819SCB8_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A819SCB8_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 9.800e-9
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEY 168
            YP +A++A+ + SVPASSA +ER+FS AG+++T  RSRL+ E V   +F N  ++Y
Sbjct:  119 YPRLAKIAKRVFSVPASSAGVEREFSLAGNIITKKRSRLSPETVNDIIFQNSFEKY 174          
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: W2PE29_PHYPN (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PE29_PHYPN)

HSP 1 Score: 57.0 bits (136), Expect = 1.790e-8
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   19 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 177
            VARVL S+P+SSA +ERDF  AG ++T  RS LA   V+M  FLN N+ Y+ I
Sbjct:   71 VARVLFSMPSSSAQIERDFGAAGRMVTPQRSSLAPYNVDMATFLNCNRSYVDI 123          
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A080YX20_PHYPR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080YX20_PHYPR)

HSP 1 Score: 56.6 bits (135), Expect = 2.100e-8
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 YPNMARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 177
            Y  + +V R+L ++P SSA +ERDF TAG L+T  R  +A   V+M+ FLN N++++ +
Sbjct:   96 YTFLPQVVRILFAIPTSSAQIERDFGTAGQLVTPQRGSIAPYNVDMSAFLNCNRQFVDV 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE4.920e-2383.05Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE2.740e-1358.62Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE1.640e-1257.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A225UGF7_9STRA2.480e-1058.49Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
H3GTQ6_PHYRM2.360e-954.72Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
UPI0019661A932.390e-952.83zinc finger BED domain-containing protein DAYSLEEP... [more]
UPI001469E3E57.340e-952.83zinc finger BED domain-containing protein DAYSLEEP... [more]
A0A819SCB8_9BILA9.800e-948.21Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
W2PE29_PHYPN1.790e-854.72Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A080YX20_PHYPR2.100e-842.37Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77436contigH-elongata_contig77436:1242..1418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size177
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.050979-UTR-H-elongata_contig77436:1241..12501622931180.050979-UTR-H-elongata_contig77436:1241..1250Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77436 1242..1250 +
1691679731.005014-UTR-H-elongata_contig77436:1241..12501691679731.005014-UTR-H-elongata_contig77436:1241..1250Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77436 1242..1250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.0652375-CDS-H-elongata_contig77436:1250..14181622931180.0652375-CDS-H-elongata_contig77436:1250..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77436 1251..1418 +
1691679731.0151284-CDS-H-elongata_contig77436:1250..14181691679731.0151284-CDS-H-elongata_contig77436:1250..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77436 1251..1418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77436.15422.1prot_H-elongata_contig77436.15422.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77436 1251..1418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77436.15422.1

>prot_H-elongata_contig77436.15422.1 ID=prot_H-elongata_contig77436.15422.1|Name=mRNA_H-elongata_contig77436.15422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNEN
QEYIPI
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mRNA from alignment at H-elongata_contig77436:1242..1418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77436.15422.1 ID=mRNA_H-elongata_contig77436.15422.1|Name=mRNA_H-elongata_contig77436.15422.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig77436:1242..1418+ (Himanthalia elongata Himel1 dioecious)
TACCCGAACATGGCGCGTGTGGCTCGAGTTCTGCTGTCGGTGCCGGCATC TTCTGCCGTCCTCGAGCGGGACTTCAGCACGGCTGGCCACCTTCTCACCG GGTCCCGCAGCCGACTGGCGGGGGAGTACGTCGAGATGACGCTGTTCCTC AACGAGAACCAGGAGTACATCCCGATC
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Coding sequence (CDS) from alignment at H-elongata_contig77436:1242..1418+

>mRNA_H-elongata_contig77436.15422.1 ID=mRNA_H-elongata_contig77436.15422.1|Name=mRNA_H-elongata_contig77436.15422.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig77436:1242..1418+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCGTGTGGCTCGAGTTCTGCTGTCGGTGCCGGCATCTTCTGCCGT
CCTCGAGCGGGACTTCAGCACGGCTGGCCACCTTCTCACCGGGTCCCGCA
GCCGACTGGCGGGGGAGTACGTCGAGATGACGCTGTTCCTCAACGAGAAC
CAGGAGTACATCCCGATCATGGCGCGTGTGGCTCGAGTTCTGCTGTCGGT
GCCGGCATCTTCTGCCGTCCTCGAGCGGGACTTCAGCACGGCTGGCCACC
TTCTCACCGGGTCCCGCAGCCGACTGGCGGGGGAGTACGTCGAGATGACG
CTGTTCCTCAACGAGAACCAGGAGTACATCCCGATC
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