mRNA_H-elongata_contig77335.15411.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77335.15411.1
Unique NamemRNA_H-elongata_contig77335.15411.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77335.15411.1 vs. uniprot
Match: D7FLG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLG9_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 8.700e-92
Identity = 125/169 (73.96%), Postives = 141/169 (83.43%), Query Frame = 1
Query:    1 QKFIKPAMWLPGFRYPHNWWETWTVENAGPEVCTRDMGRAIENVADSASAQEGVGGGLMLFHLSSLRYSAEERTGYATMLCLTKARWMDIVELKIYPPAEGASGSEVLAHGYSTGFLPLKIPFAFLFNIPLCFVPFSDMKIIRTSWMPGIRNRLEHKALVKEGSEGYRL 507
            QKF+KPAMWLPG RYPHNWWETW+V  A PEVC RDMGRAIENVA +A + EG+G G M+F L+SLRY AEE  GYA M+C++KARW+DIVELK+Y P  G  GSEV AHGYSTGFLPLKIP A L NIPLCF+PFSD KIIR +WMPGIRNRLEHKA V+EGSE Y+L
Sbjct:   32 QKFLKPAMWLPGLRYPHNWWETWSVATADPEVCVRDMGRAIENVAIAAESSEGIGDGQMVFQLASLRYCAEEGVGYAKMICVSKARWLDIVELKVYKPEGGGEGSEVAAHGYSTGFLPLKIPLACLINIPLCFIPFSDNKIIRNTWMPGIRNRLEHKAFVQEGSERYKL 200          
BLAST of mRNA_H-elongata_contig77335.15411.1 vs. uniprot
Match: A0A2B4SQK4_STYPI (Uncharacterized protein n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SQK4_STYPI)

HSP 1 Score: 92.4 bits (228), Expect = 1.260e-20
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 QKFIKPAMWLPGFRYPHNWWETWTVENAGPEVCTRDMGRAIENVADSASAQEGVGGGLMLFHLSSLRYSAEERTGYATMLCLTKARWMDIVELKIYPPAEGASGSEVLAHGYSTGFLPLKIPFAFLFNIPLCFVPFSDMK 420
            Q  ++PA+WLPG R  H+  ETW +  A PEVC   +  AI  ++++              H++ +R+   ER  +  +   T+A W+DIVE++  P  E   G+   A  +STGFLPL IPFAFL N+   F+PF D K
Sbjct:   16 QGVLRPAVWLPGVRNLHSCKETWIIPEATPEVCLEHLVSAIALLSETEK-----------MHINKVRH---ERN-FVQIFSYTEAEWLDIVEIEFQPGQE--RGTLAKAKSFSTGFLPLMIPFAFLLNMIFFFIPFYDNK 138          
BLAST of mRNA_H-elongata_contig77335.15411.1 vs. uniprot
Match: UPI0009E3CCF5 (uncharacterized protein LOC110059774 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E3CCF5)

HSP 1 Score: 83.6 bits (205), Expect = 3.350e-17
Identity = 48/140 (34.29%), Postives = 70/140 (50.00%), Query Frame = 1
Query:    1 QKFIKPAMWLPGFRYPHNWWETWTVENAGPEVCTRDMGRAIENVADSASAQEGVGGGLMLFHLSSLRYSAEERTGYATMLCLTKARWMDIVELKIYPPAEGASGSEVLAHGYSTGFLPLKIPFAFLFNIPLCFVPFSDMK 420
            Q  ++PAMW+PG R  H+  ETW +  A PEVC   +  A+  +++               H++ +R        +  +   T+  W+DIVE++  P  E   G+   A  +STG LPL IPFAFL N+   F PF D K
Sbjct:   16 QGALRPAMWVPGIRNLHSRNETWVIPEATPEVCLEHVISAVAILSEKEK-----------MHINKVRPGRN----FVQIFSYTEYEWLDIVEIEFQPGQE--RGTLAKARSFSTGLLPLMIPFAFLLNMIFFFAPFYDNK 138          
BLAST of mRNA_H-elongata_contig77335.15411.1 vs. uniprot
Match: A0A210R2M1_MIZYE (Uncharacterized protein n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R2M1_MIZYE)

HSP 1 Score: 81.3 bits (199), Expect = 2.260e-16
Identity = 43/143 (30.07%), Postives = 75/143 (52.45%), Query Frame = 1
Query:    1 QKFIKPAMWLPGFRYPHNWWETWTVENAGPEVCTRDMGRAIENVADSASAQEGVGGGLMLFHLSSLRYSAEERTGYATMLCLTKARWMDIVELKIYPPAEGASGSEVLAHGYSTGFLPLKIPFAFLFNIPLCFVPFSDMKIIR 429
            Q F++PAMWLPG    H+  ETW  ++ G +    D+  ++ ++ +S      + G   + +        +E  G+  +   T A W+D++E  +        G+++ A  +S+GFLPL +PFA +FN  L ++PF D+K  R
Sbjct:   13 QSFLRPAMWLPGCNRLHSHTETWRSDSVGADSLLEDIVNSVPDLMESD-----ITGATYVVN------KVDEERGFVRIFAFTWANWLDVMEFTM-------RGNKIQARSFSSGFLPLSVPFAVIFNCVLFWMPFYDIKYNR 137          
BLAST of mRNA_H-elongata_contig77335.15411.1 vs. uniprot
Match: UPI001F043BDA (uncharacterized protein LOC124433766 n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043BDA)

HSP 1 Score: 78.6 bits (192), Expect = 2.090e-15
Identity = 47/146 (32.19%), Postives = 73/146 (50.00%), Query Frame = 1
Query:    1 QKFIKPAMWLPGFRYPHNWWETWTVENAGPEVCTRDMGRAIENVADSASAQEGVGGGLMLFHLSSLRYSAEERTGYATMLCLTKARWMDIVELKIYPPA-EGASGSEVLAHGYSTGFLPLKIPFAFLFNIPLCFVPFSDMKIIRTS 435
            Q  ++PA+WLPG R  H+  E W +    PE     + + I+ VA  A  ++      +  H      S +    +  + C TKA W+D+VE+ +YP   +G  G+   A  +STG LP+ +P +FL N    FVPF D  + R +
Sbjct:   13 QAKLRPAVWLPGVRNLHSCAERWEIPELVPE---ESLQKVIDAVARLAEMED------IYLH------SVDREKNFVQIFCYTKAGWLDVVEIDLYPGRFQGTQGN---ARSFSTGLLPVWVPLSFLLNSIFFFVPFYDRNLNRNA 140          
BLAST of mRNA_H-elongata_contig77335.15411.1 vs. uniprot
Match: UPI001458713E (uncharacterized protein LOC117333004 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458713E)

HSP 1 Score: 77.4 bits (189), Expect = 6.850e-15
Identity = 41/144 (28.47%), Postives = 70/144 (48.61%), Query Frame = 1
Query:    1 QKFIKPAMWLPGFRYPHNWWETWTVENAGPEVCTRDMGRAIENVADSASAQEGVGGGLMLFHLSSLRYSAEERTGYATMLCLTKARWMDIVELKIYPPAEGASGSEVLAHGYSTGFLPLKIPFAFLFNIPLCFVPFSDMKIIRT 432
            Q F++PAMW+PG    H+  E W  ++ G +    D+   + ++ +  S              + +    +E  G+  +   T A W+D++E  +        G+++ A  +S+GFLPL IPFA + N  L ++PF D K  RT
Sbjct:   13 QSFLRPAMWVPGCNKLHSHKEIWRSDSVGADALLEDIINTVPDLTECDSTGS-----------TYVVNKVDEERGFVRIFAFTWANWLDVMEFTL-------RGNKLQARSFSSGFLPLSIPFAAILNCVLFWIPFYDKKFNRT 138          
BLAST of mRNA_H-elongata_contig77335.15411.1 vs. uniprot
Match: UPI00065BA7F8 (uncharacterized protein LOC106012991 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065BA7F8)

HSP 1 Score: 75.1 bits (183), Expect = 9.570e-14
Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 1
Query:    1 QKFIKPAMWLPGFRYPHNWWETWTVENAGPEVCTRDMGRAIENVADSASAQEGVGGGLMLFHLSSLRYSAEERTGYATMLCLTKARWMDIVELKIYPPAEGASGSEVLAHGYSTGFLPLKIPFAFLFNIPLCFVPFSD 414
            Q F++PA+W+PG R  H+  ETWT+ +   +     +  A+  V      +E   G       + L+ +     G+  +   T+A W+DI+EL          G+EV    +S+GFLPL IPFA + N+PL ++PF D
Sbjct:   41 QNFLRPAVWVPGLRNLHSHRETWTLPSDSHQNNLESVLGALMTVI-----KEDKSGSFWDVQKNDLQVAR----GFIRVFVYTRAEWLDIIELTF-------KGTEVQVWSFSSGFLPLFIPFACVLNVPLFWIPFLD 162          
BLAST of mRNA_H-elongata_contig77335.15411.1 vs. uniprot
Match: A0A1X7VML2_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VML2_AMPQE)

HSP 1 Score: 74.3 bits (181), Expect = 1.410e-13
Identity = 40/141 (28.37%), Postives = 70/141 (49.65%), Query Frame = 1
Query:    1 QKFIKPAMWLPGFRYPHNWWETWTVENAGPEVCTRDMGRAIENVADSASAQEGVGGGLMLFHLSSLRYSAEERTGYATMLCLTKARWMDIVELKIYPPAEGASGSEVLAHGYSTGFLPLKIPFAFLFNIPLCFVPFSDMKI 423
            Q  ++P +WLPG R PH + E W VE   P+    ++ ++I +V D                +  L+ + EER          +  W+D++E++I   +   S + V   G+STG  P+ +P +FL++   C++PF D+ I
Sbjct:   19 QSLLRPGLWLPGIRTPHQYSEVWEVEEP-PQQAFDEILKSIRSVIDKDK------------EMMELKEADEERLFIQLFSFTRRCNWLDVIEIQI-DASLMQSETTVSVKGFSTGIFPVSLPLSFLWSALFCWIPFKDVGI 145          
BLAST of mRNA_H-elongata_contig77335.15411.1 vs. uniprot
Match: A0A6J8B8L3_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8B8L3_MYTCO)

HSP 1 Score: 74.3 bits (181), Expect = 3.000e-13
Identity = 44/141 (31.21%), Postives = 72/141 (51.06%), Query Frame = 1
Query:    1 QKFIKPAMWLPGFRYPHNWWETWTVENAGPEVCTRDMGRAIENVADSASAQEGVGGGLMLFHLSSLRYSAEERTGYATMLCLTKARWMDIVELKIYPPAEGASGSEVLAHGYSTGFLPLKIPFAFLFNIPLCFVPFSDMKI 423
            Q  I+PAMW+PG +  H+ + TW  +    EV    + RAI+ +  +    +  G    +  ++  +Y       +  + C T+A W+D+VE++I           + A  +S+GFLPL IPFAF+ N    +VPF D K+
Sbjct:    7 QALIRPAMWIPGIKNLHSHFVTWQSDKPPTEVLAA-LVRAIKQIKSA----DDTGSYYDIHKINKEKY-------FLRVFCFTRAEWLDVVEIEI-------KEDSIEAKSFSSGFLPLFIPFAFILNCVFFWVPFYDNKL 128          
BLAST of mRNA_H-elongata_contig77335.15411.1 vs. uniprot
Match: A0A3L5TV06_MYTGA (Uncharacterized protein (Fragment) n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A3L5TV06_MYTGA)

HSP 1 Score: 70.5 bits (171), Expect = 1.980e-11
Identity = 40/141 (28.37%), Postives = 68/141 (48.23%), Query Frame = 1
Query:    1 QKFIKPAMWLPGFRYPHNWWETWTVENAGPEVCTRDMGRAIENVADSASAQEGVGGGLMLFHLSSLRYSAEERTGYATMLCLTKARWMDIVELKIYPPAEGASGSEVLAHGYSTGFLPLKIPFAFLFNIPLCFVPFSDMKI 423
            Q  ++PAMW+PG +  H+ + TW  +    EV       A+        + +  G    +  ++  ++       +  + C T+A W+D+VE++I           + A  +S+GFLPL IPFAF+ N    +VPF D K+
Sbjct:   31 QALLRPAMWIPGIKNIHSHFVTWQSDKPPTEVLA-----ALVTAIKQIKSSDDTGSFYDIHKINKDKH-------FLRVFCFTRAEWLDVVEIEI-------KEDSIEAKSFSSGFLPLFIPFAFILNCVFFWVPFFDNKL 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77335.15411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FLG9_ECTSI8.700e-9273.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2B4SQK4_STYPI1.260e-2037.86Uncharacterized protein n=2 Tax=Pocilloporidae Tax... [more]
UPI0009E3CCF53.350e-1734.29uncharacterized protein LOC110059774 n=1 Tax=Orbic... [more]
A0A210R2M1_MIZYE2.260e-1630.07Uncharacterized protein n=1 Tax=Mizuhopecten yesso... [more]
UPI001F043BDA2.090e-1532.19uncharacterized protein LOC124433766 n=1 Tax=Xenia... [more]
UPI001458713E6.850e-1528.47uncharacterized protein LOC117333004 n=1 Tax=Pecte... [more]
UPI00065BA7F89.570e-1432.61uncharacterized protein LOC106012991 n=1 Tax=Aplys... [more]
A0A1X7VML2_AMPQE1.410e-1328.37Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A6J8B8L3_MYTCO3.000e-1331.21Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]
A0A3L5TV06_MYTGA1.980e-1128.37Uncharacterized protein (Fragment) n=1 Tax=Mytilus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77335contigH-elongata_contig77335:1231..2207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.0
Seed ortholog evalue9.2e-09
Seed eggNOG ortholog400682.PAC_15726087
EggNOG OGs2DZPK@1,2S76K@2759,3A8NC@33154,3BUZ5@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_001230.1
Exons2
Model size510
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77335.15411.1prot_H-elongata_contig77335.15411.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77335 1231..2186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931178.95658-CDS-H-elongata_contig77335:1230..14081622931178.95658-CDS-H-elongata_contig77335:1230..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77335 1231..1408 -
1691679730.6479623-CDS-H-elongata_contig77335:1230..14081691679730.6479623-CDS-H-elongata_contig77335:1230..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77335 1231..1408 -
1622931178.9770732-CDS-H-elongata_contig77335:1875..21861622931178.9770732-CDS-H-elongata_contig77335:1875..2186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77335 1876..2186 -
1691679730.6602714-CDS-H-elongata_contig77335:1875..21861691679730.6602714-CDS-H-elongata_contig77335:1875..2186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77335 1876..2186 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.0007658-UTR-H-elongata_contig77335:2186..22071622931179.0007658-UTR-H-elongata_contig77335:2186..2207Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77335 2187..2207 -
1691679730.6720238-UTR-H-elongata_contig77335:2186..22071691679730.6720238-UTR-H-elongata_contig77335:2186..2207Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77335 2187..2207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77335.15411.1

>prot_H-elongata_contig77335.15411.1 ID=prot_H-elongata_contig77335.15411.1|Name=mRNA_H-elongata_contig77335.15411.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MWLPGFRYPHNWWETWTVENAGPEVCTRDMGRAIENVADSASAQEGVGGG
LMLFHLSSLRYSAEERTGYATMLCLTKARWMDIVELKIYPPAEGASGSEV
LAHGYSTGFLPLKIPFAFLFNIPLCFVPFSDMKIIRTSWMPGIRNRLEHK
ALVKEGSEGYRL*
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mRNA from alignment at H-elongata_contig77335:1231..2207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77335.15411.1 ID=mRNA_H-elongata_contig77335.15411.1|Name=mRNA_H-elongata_contig77335.15411.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=977bp|location=Sequence derived from alignment at H-elongata_contig77335:1231..2207- (Himanthalia elongata Himel1 dioecious)
CAGAAATTTATCAAGCCCGCGATGTGGCTACCGGGTTTCCGCTACCCTCA CAACTGGTGGGAGACGTGGACAGTCGAAAACGCCGGTCCGGAGGTCTGTA CGCGGGACATGGGTCGGGCTATCGAGAACGTCGCGGACTCCGCGAGTGCC CAGGAGGGGGTCGGCGGCGGGCTGATGCTCTTCCACCTGTCGTCCCTTCG GTACTCGGCGGAAGAGAGGACGGGCTACGCGACGATGCTGTGCCTCACGA AGGCGAGGTGGATGGACATCGTCGAGCTCAAGATCTACCCACCCGCGGAA GGAGCGTCGGGGTCCGAGGTCTTGGCACACGGGTGAGAGAGAAAAAGGAG GGGAGAGGCCGAGAAGGAAAAATATAAAACGCCTTTGATTTCGGGAGCCT AGGATAGAAATGGATGGACTTTTTTCACCACGGTTGTATGCGTACGCGGT ACGACGGGGTCTGGCTTCTTTATCTTCCGCGCTGATCGCCGACGCGTGAG AGGTGTATTTTTTTAAGGGGCTGGGGGCGACAGCTTTTATCGTAACATTT AGCTGCTATCGCGCTGTGCCATTGCGCGCGATCGAGAGAAACACTACTCT ACTCTACTCTATATAGAATATATGTAGTACGCTCCTTGAATCTACTCACC CAATGCTGATGGCATGCGGCATCCAAGGGCGTTGACGGCTACGCTCCCCC CTTTATCCGCCCCGGCTCCCGGTGCGCATTTTTTTACACCGAAACCGCCC GCCGCGTTTATTGTGATGGGTGTTGGGGGGTCGCGGTCATCTCTCGCAGC TACAGCACGGGGTTCCTCCCTCTCAAGATCCCGTTCGCGTTCCTGTTCAA CATCCCGCTGTGCTTCGTCCCGTTCTCGGACATGAAGATCATTCGCACGT CTTGGATGCCGGGCATCCGCAATCGCCTCGAGCACAAGGCCTTGGTGAAG GAGGGATCCGAAGGATATAGGCTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig77335:1231..2207-

>mRNA_H-elongata_contig77335.15411.1 ID=mRNA_H-elongata_contig77335.15411.1|Name=mRNA_H-elongata_contig77335.15411.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig77335:1231..2207- (Himanthalia elongata Himel1 dioecious)
ATGTGGCTACCGGGTTTCCGCTACCCTCACAACTGGTGGGAGACGTGGAC
AGTCGAAAACGCCGGTCCGGAGGTCTGTACGCGGGACATGGGTCGGGCTA
TCGAGAACGTCGCGGACTCCGCGAGTGCCCAGGAGGGGGTCGGCGGCGGG
CTGATGCTCTTCCACCTGTCGTCCCTTCGGTACTCGGCGGAAGAGAGGAC
GGGCTACGCGACGATGCTGTGCCTCACGAAGGCGAGGTGGATGGACATCG
TCGAGCTCAAGATCTACCCACCCGCGGAAGGAGCGTCGGGGTCCGAGGTC
TTGGCACACGGATGTGGCTACCGGGTTTCCGCTACCCTCACAACTGGTGG
GAGACGTGGACAGTCGAAAACGCCGGTCCGGAGGTCTGTACGCGGGACAT
GGGTCGGGCTATCGAGAACGTCGCGGACTCCGCGAGTGCCCAGGAGGGGG
TCGGCGGCGGGCTGATGCTCTTCCACCTGTCGTCCCTTCGGTACTCGGCG
GAAGAGAGGACGGGCTACGCGACGATGCTGTGCCTCACGAAGGCGAGGTG
GATGGACATCGTCGAGCTCAAGATCTACCCACCCGCGGAAGGAGCGTCGG
GGTCCGAGGTCTTGGCACACGGCTACAGCACGGGGTTCCTCCCTCTCAAG
ATCCCGTTCGCGTTCCTGTTCAACATCCCGCTGTGCTTCGTCCCGTTCTC
GGACATGAAGATCATTCGCACGTCTTGGATGCCGGGCATCCGCAATCGCC
TCGAGCACAAGGCCTTGGTGAAGGAGGGATCCGAAGGATATAGGCTGTGA
CTACAGCACGGGGTTCCTCCCTCTCAAGATCCCGTTCGCGTTCCTGTTCA
ACATCCCGCTGTGCTTCGTCCCGTTCTCGGACATGAAGATCATTCGCACG
TCTTGGATGCCGGGCATCCGCAATCGCCTCGAGCACAAGGCCTTGGTGAA
GGAGGGATCCGAAGGATATAGGCTGTGA
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