mRNA_H-elongata_contig77263.15402.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 118 bits (295), Expect = 2.900e-28 Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 1
Query: 64 LDILRKRYGTGITFEGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
LD LR GT T EFR+YCL+ G +A+TNTPQ++G +ER GRTL AMVR +L DSG P +WG+L TA YL NR PH AL TP+K L+G++A+L HLR
Sbjct: 56 LDCLRGDKGTECTCR----EFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLR 161
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 115 bits (288), Expect = 1.290e-27 Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 124 FRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHL 390
F +YC + GI +FA+TNTPQ IG +ER+GRTL MVR +LADSG P +W ELFMTA YL NR+PH A TPFK LHG+EA L HL
Sbjct: 405 FCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTASYLSNRSPHSASDNVTPFKALHGKEAYLGHL 493
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE) HSP 1 Score: 114 bits (286), Expect = 3.010e-27 Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query: 121 EFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
EFR+YCL+ G+ +A+TNTPQ+IG +ER GRTL AMVR +L DSG P +WG L TAVYL NR PH AL TP+K L+ ++A+L HLR
Sbjct: 344 EFREYCLQIGVKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITPYKALYCKDANLGHLR 434
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L4Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y1_9PHAE) HSP 1 Score: 114 bits (285), Expect = 6.540e-27 Identity = 66/149 (44.30%), Postives = 84/149 (56.38%), Query Frame = 1
Query: 16 NAQVWHRRMGHLHAQSLDILRKRYGTG--ITFEG-------AVSEFRQYC--------------LETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
+A +WHRR+GH++ ++ ILR+ TG + F+ A R Y +E+ I FAATNTPQEIGVSER G+TL A+ R +L D FP MWGEL MTA YL NRTPH AL TP+ ++ DLS LR
Sbjct: 502 SADLWHRRLGHINPSAMKILRRNPATGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 650
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5JQY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY8_9PHAE) HSP 1 Score: 110 bits (276), Expect = 5.300e-26 Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
LHA ++ + + Y + E E R YC E+ I FAATNTPQEIGVSER G+TL A+ R +L D FP MWGEL MTA YL NRTPH AL TP+ ++ DLS LR
Sbjct: 348 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 467
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L4X4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X4_9PHAE) HSP 1 Score: 111 bits (277), Expect = 5.780e-26 Identity = 60/120 (50.00%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
LHA ++ + + Y I E E R YC E+ I FAATNTPQEIGVSER G+TL A+ R +L D FP MWGEL MTA YL NRTPH AL TP+ ++ DLS LR
Sbjct: 271 LHAYNMQVASEGYRIEILRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 390
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5JVS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS2_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.040e-25 Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
LHA ++ + + Y + E E R YC E+ I FAATNTPQEIGVSER G+TL A+ R +L D FP MWGEL MTA YL NRTPH AL TP+ ++ DLS LR
Sbjct: 462 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 581
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5KBJ2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ2_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.070e-25 Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
LHA ++ + + Y + E E R YC E+ I FAATNTPQEIGVSER G+TL A+ R +L D FP MWGEL MTA YL NRTPH AL TP+ ++ DLS LR
Sbjct: 681 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 800
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5KBQ2_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBQ2_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.080e-25 Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
LHA ++ + + Y + E E R YC E+ I FAATNTPQEIGVSER G+TL A+ R +L D FP MWGEL MTA YL NRTPH AL TP+ ++ DLS LR
Sbjct: 317 LHAYNMQVASEGYRIEVLRCKKGGENTGDEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKRMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 436
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L197_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L197_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.090e-25 Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
LHA ++ + + Y + E E R YC E+ I FAATNTPQEIGVSER G+TL A+ R +L D FP MWGEL MTA YL NRTPH AL TP+ ++ DLS LR
Sbjct: 644 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 763 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77263.15402.1 >prot_H-elongata_contig77263.15402.1 ID=prot_H-elongata_contig77263.15402.1|Name=mRNA_H-elongata_contig77263.15402.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp MNAVANAQVWHRRMGHLHAQSLDILRKRYGTGITFEGAVSEFRQYCLETGback to top mRNA from alignment at H-elongata_contig77263:2593..2985+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77263.15402.1 ID=mRNA_H-elongata_contig77263.15402.1|Name=mRNA_H-elongata_contig77263.15402.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig77263:2593..2985+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77263:2593..2985+ >mRNA_H-elongata_contig77263.15402.1 ID=mRNA_H-elongata_contig77263.15402.1|Name=mRNA_H-elongata_contig77263.15402.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig77263:2593..2985+ (Himanthalia elongata Himel1 dioecious)back to top |