mRNA_H-elongata_contig77263.15402.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77263.15402.1
Unique NamemRNA_H-elongata_contig77263.15402.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.900e-28
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 1
Query:   64 LDILRKRYGTGITFEGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
            LD LR   GT  T      EFR+YCL+ G    +A+TNTPQ++G +ER GRTL AMVR +L DSG P  +WG+L  TA YL NR PH AL   TP+K L+G++A+L HLR
Sbjct:   56 LDCLRGDKGTECTCR----EFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLR 161          
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.290e-27
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 1
Query:  124 FRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHL 390
            F +YC + GI  +FA+TNTPQ IG +ER+GRTL  MVR +LADSG P  +W ELFMTA YL NR+PH A    TPFK LHG+EA L HL
Sbjct:  405 FCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTASYLSNRSPHSASDNVTPFKALHGKEAYLGHL 493          
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.010e-27
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query:  121 EFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
            EFR+YCL+ G+   +A+TNTPQ+IG +ER GRTL AMVR +L DSG P  +WG L  TAVYL NR PH AL   TP+K L+ ++A+L HLR
Sbjct:  344 EFREYCLQIGVKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITPYKALYCKDANLGHLR 434          
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L4Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 6.540e-27
Identity = 66/149 (44.30%), Postives = 84/149 (56.38%), Query Frame = 1
Query:   16 NAQVWHRRMGHLHAQSLDILRKRYGTG--ITFEG-------AVSEFRQYC--------------LETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
            +A +WHRR+GH++  ++ ILR+   TG  + F+        A    R Y               +E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  502 SADLWHRRLGHINPSAMKILRRNPATGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 650          
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5JQY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY8_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.300e-26
Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
            LHA ++ +  + Y   +       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  348 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 467          
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L4X4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.780e-26
Identity = 60/120 (50.00%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
            LHA ++ +  + Y   I       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  271 LHAYNMQVASEGYRIEILRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 390          
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5JVS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.040e-25
Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
            LHA ++ +  + Y   +       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  462 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 581          
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5KBJ2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.070e-25
Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
            LHA ++ +  + Y   +       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  681 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 800          
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5KBQ2_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBQ2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.080e-25
Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
            LHA ++ +  + Y   +       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  317 LHAYNMQVASEGYRIEVLRCKKGGENTGDEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKRMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 436          
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L197_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L197_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.090e-25
Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   49 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 393
            LHA ++ +  + Y   +       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  644 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 763          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE2.900e-2853.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1J1_9PHAE1.290e-2761.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF9_9PHAE3.010e-2758.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L4Y1_9PHAE6.540e-2744.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQY8_9PHAE5.300e-2649.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4X4_9PHAE5.780e-2650.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVS2_9PHAE1.040e-2549.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBJ2_9PHAE1.070e-2549.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBQ2_9PHAE1.080e-2549.17Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L197_9PHAE1.090e-2549.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77263contigH-elongata_contig77263:2593..2985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue4.8e-16
Seed eggNOG ortholog3750.XP_008369160.1
KEGG rclassRC00010
KEGG koko:K13566
KEGG ReactionR00269,R00348
KEGG Pathwayko00250,map00250
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsCOG2801@1,KOG0017@2759,KOG1075@1,KOG1075@2759
EC3.5.1.3
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.917238-CDS-H-elongata_contig77263:2592..29851622931177.917238-CDS-H-elongata_contig77263:2592..2985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77263 2593..2985 +
1691679730.3059025-CDS-H-elongata_contig77263:2592..29851691679730.3059025-CDS-H-elongata_contig77263:2592..2985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77263 2593..2985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77263.15402.1prot_H-elongata_contig77263.15402.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77263 2593..2985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77263.15402.1

>prot_H-elongata_contig77263.15402.1 ID=prot_H-elongata_contig77263.15402.1|Name=mRNA_H-elongata_contig77263.15402.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MNAVANAQVWHRRMGHLHAQSLDILRKRYGTGITFEGAVSEFRQYCLETG
IIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAV
YLKNRTPHKALKMETPFKMLHGEEADLSHLR
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mRNA from alignment at H-elongata_contig77263:2593..2985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77263.15402.1 ID=mRNA_H-elongata_contig77263.15402.1|Name=mRNA_H-elongata_contig77263.15402.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig77263:2593..2985+ (Himanthalia elongata Himel1 dioecious)
ATGAACGCAGTCGCCAATGCCCAGGTGTGGCACCGACGGATGGGTCATCT CCATGCGCAGAGCCTGGATATTCTACGCAAGCGATACGGCACTGGCATCA CCTTCGAGGGGGCCGTCTCGGAGTTCCGGCAGTACTGCTTGGAGACCGGT ATTATCCAAGTGTTCGCCGCAACCAACACGCCACAGGAAATCGGTGTGTC CGAACGAGTGGGGAGGACTCTGTGCGCGATGGTTCGATACATGCTCGCAG ACAGCGGCTTCCCATCGTCCATGTGGGGGGAACTGTTCATGACGGCTGTG TACCTAAAGAACAGAACTCCGCACAAGGCGCTCAAGATGGAGACGCCGTT CAAGATGCTTCACGGCGAGGAAGCCGACCTCTCGCACCTTCGC
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Coding sequence (CDS) from alignment at H-elongata_contig77263:2593..2985+

>mRNA_H-elongata_contig77263.15402.1 ID=mRNA_H-elongata_contig77263.15402.1|Name=mRNA_H-elongata_contig77263.15402.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig77263:2593..2985+ (Himanthalia elongata Himel1 dioecious)
ATGAACGCAGTCGCCAATGCCCAGGTGTGGCACCGACGGATGGGTCATCT
CCATGCGCAGAGCCTGGATATTCTACGCAAGCGATACGGCACTGGCATCA
CCTTCGAGGGGGCCGTCTCGGAGTTCCGGCAGTACTGCTTGGAGACCGGT
ATTATCCAAGTGTTCGCCGCAACCAACACGCCACAGGAAATCGGTGTGTC
CGAACGAGTGGGGAGGACTCTGTGCGCGATGGTTCGATACATGCTCGCAG
ACAGCGGCTTCCCATCGTCCATGTGGGGGGAACTGTTCATGACGGCTGTG
TACCTAAAGAACAGAACTCCGCACAAGGCGCTCAAGATGGAGACGCCGTT
CAAGATGCTTCACGGCGAGGAAGCCGACCTCTCGCACCTTCGCATGAACG
CAGTCGCCAATGCCCAGGTGTGGCACCGACGGATGGGTCATCTCCATGCG
CAGAGCCTGGATATTCTACGCAAGCGATACGGCACTGGCATCACCTTCGA
GGGGGCCGTCTCGGAGTTCCGGCAGTACTGCTTGGAGACCGGTATTATCC
AAGTGTTCGCCGCAACCAACACGCCACAGGAAATCGGTGTGTCCGAACGA
GTGGGGAGGACTCTGTGCGCGATGGTTCGATACATGCTCGCAGACAGCGG
CTTCCCATCGTCCATGTGGGGGGAACTGTTCATGACGGCTGTGTACCTAA
AGAACAGAACTCCGCACAAGGCGCTCAAGATGGAGACGCCGTTCAAGATG
CTTCACGGCGAGGAAGCCGACCTCTCGCACCTTCGC
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