mRNA_H-elongata_contig76913.15362.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76913.15362.1
Unique NamemRNA_H-elongata_contig76913.15362.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76913.15362.1 vs. uniprot
Match: A0A6H5JB93_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB93_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.900e-40
Identity = 66/75 (88.00%), Postives = 73/75 (97.33%), Query Frame = 1
Query:    1 QHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPAKQQVFERAYRELRAKLLTMGMFNAE 225
            +HPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPA Q+ FER+YRELR+KLLTMGM+N++
Sbjct:   66 EHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPAAQRAFERSYRELRSKLLTMGMYNSD 140          
BLAST of mRNA_H-elongata_contig76913.15362.1 vs. uniprot
Match: A0A835YVN5_9STRA (Delta-6 desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 4.230e-28
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 QHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPAKQQVFERAYRELRAKLLTMGMFNA 222
             HPGG+VIFTHAGDDFTDIFAAFHPP+AY  ++PFYIG+LD  S   KP  Q+ FE+AYR+LR KL+  GMFN+
Sbjct:   57 DHPGGHVIFTHAGDDFTDIFAAFHPPSAYKSMDPFYIGELDTPSIEIKPLAQRNFEKAYRDLRGKLVVAGMFNS 130          
BLAST of mRNA_H-elongata_contig76913.15362.1 vs. uniprot
Match: A0A835YIW8_9STRA (Delta-6 fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIW8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 4.330e-28
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 QHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPAKQQVFERAYRELRAKLLTMGMFNA 222
             HPGG+VIFTHAGDD TDIFAAFHPP+AY  +EP+ IGDLD+ S   KPA Q+ FERAYR+LR KL+  GMFN+
Sbjct:   60 DHPGGHVIFTHAGDDATDIFAAFHPPSAYKTMEPYCIGDLDKASVERKPAAQRDFERAYRDLRGKLVVAGMFNS 133          
BLAST of mRNA_H-elongata_contig76913.15362.1 vs. uniprot
Match: A0A6U1MUF7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MUF7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.140e-25
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 QHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPAKQQVFERAYRELRAKLLTMGMFNA 222
             HPGG VIFTHAGDDFTDIFAAFHP ++YAVL+ F IG LDE S   K   Q+ FE+AYR LR KL+ MGM+NA
Sbjct:   50 DHPGGAVIFTHAGDDFTDIFAAFHPKSSYAVLDKFLIGYLDE-STTKKTEDQKNFEKAYRTLRTKLVAMGMYNA 122          
BLAST of mRNA_H-elongata_contig76913.15362.1 vs. uniprot
Match: A0A7S0C8F5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8F5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.040e-23
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 QHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPAKQQVFERAYRELRAKLLTMGMFNA 222
            QHPGG+VIFTHAGDD TDIF AFH P + A+++ FYIGDL ++S   K  +Q  FE+ YR+LRAKL+ MGMF +
Sbjct:   58 QHPGGSVIFTHAGDDMTDIFTAFHAPGSEAMIKRFYIGDLVKESMEHKNEEQFAFEQGYRDLRAKLVMMGMFKS 131          
BLAST of mRNA_H-elongata_contig76913.15362.1 vs. uniprot
Match: A0A7S1D6N9_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6N9_CYCTE)

HSP 1 Score: 94.7 bits (234), Expect = 9.200e-23
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 QHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPAKQQVFERAYRELRAKLLTMGMFNA 222
            +HPGG V+FTHAGDD TDIFAAFH   + A+++ FYIGDL  +S   +  +Q  FE+ YR+LRAKL+ MGMF +
Sbjct:   60 EHPGGAVVFTHAGDDMTDIFAAFHAAGSQAMMKRFYIGDLIPESVAYRDERQLAFEKGYRDLRAKLVMMGMFKS 133          
BLAST of mRNA_H-elongata_contig76913.15362.1 vs. uniprot
Match: A0A1E7EWC8_9STRA (Delta-6 fatty acid desaturase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EWC8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.690e-22
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 QHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPAKQQVFERAYRELRAKLLTMGMFNAEW 228
             HPGG V+FTHAGDD TDIFAAFH P +  +L+ FYIGDL  +S   K A Q  FE+AYR+LR++L+ MGMF + +
Sbjct:   59 DHPGGGVVFTHAGDDATDIFAAFHAPGSQGMLKKFYIGDLIVESVEHKDAHQHAFEKAYRDLRSQLIVMGMFKSNF 134          
BLAST of mRNA_H-elongata_contig76913.15362.1 vs. uniprot
Match: A0A7S3PA41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PA41_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.830e-22
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 QHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLD---EKSAVAKPAKQQVFERAYRELRAKLLTMGMFNA 222
            +HPGG VIFTHAGDD TDIFAAFH P ++ ++  FYIGD+    E     K AKQ  FE+ YR+LR+KL+ MG+F +
Sbjct:   48 EHPGGAVIFTHAGDDMTDIFAAFHAPGSHNMMRKFYIGDMVDPVEDKTRPKDAKQIAFEKGYRDLRSKLVMMGLFKS 124          
BLAST of mRNA_H-elongata_contig76913.15362.1 vs. uniprot
Match: A0A1S7C7Q7_9STRA (Delta-6 fatty acid desaturase n=2 Tax=Nannochloropsis TaxID=5748 RepID=A0A1S7C7Q7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.100e-22
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 QHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPAKQQVFERAYRELRAKLLTMGMFNA 222
             HPGGNVIFTHAG D TDIFAAFHP  A + L+PFYIG+L E  +  KPA Q  FERAYR+LR KL+  G F A
Sbjct:   61 DHPGGNVIFTHAGGDCTDIFAAFHPLGATSYLDPFYIGEL-EPGSDKKPAAQANFERAYRDLRGKLIAGGFFKA 133          
BLAST of mRNA_H-elongata_contig76913.15362.1 vs. uniprot
Match: A0A0N9JKY6_9EUKA (Delta 6 fatty acid desaturase n=1 Tax=Isochrysis sp. SKMKUIso1 TaxID=1707607 RepID=A0A0N9JKY6_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 9.400e-22
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 QHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPAKQQVFERAYRELRAKLLTMGMFNA 222
             HPGGNVIFTHAG D TDIFAAFHP  A + L+PFYIG+L E  +  KPA Q  FERAYR+LR KL+  G F A
Sbjct:  112 DHPGGNVIFTHAGGDCTDIFAAFHPLGATSYLDPFYIGEL-EPGSDKKPAAQANFERAYRDLRGKLIAGGFFKA 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76913.15362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB93_9PHAE3.900e-4088.00Cytochrome b5 heme-binding domain-containing prote... [more]
A0A835YVN5_9STRA4.230e-2867.57Delta-6 desaturase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A835YIW8_9STRA4.330e-2868.92Delta-6 fatty acid desaturase n=1 Tax=Tribonema mi... [more]
A0A6U1MUF7_9STRA1.140e-2567.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0C8F5_9STRA1.040e-2360.81Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1D6N9_CYCTE9.200e-2356.76Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A1E7EWC8_9STRA2.690e-2257.89Delta-6 fatty acid desaturase n=1 Tax=Fragilariops... [more]
A0A7S3PA41_9STRA3.830e-2255.84Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1S7C7Q7_9STRA9.100e-2264.86Delta-6 fatty acid desaturase n=2 Tax=Nannochlorop... [more]
A0A0N9JKY6_9EUKA9.400e-2264.86Delta 6 fatty acid desaturase n=1 Tax=Isochrysis s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76913contigH-elongata_contig76913:2758..2985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue7.3e-33
Seed eggNOG ortholog2880.D8LQU3
KEGG koko:K21737
EggNOG free text desc.unsaturated fatty acid biosynthetic process
EggNOG OGsCOG3239@1,KOG4232@2759
EC1.14.19.38,1.14.19.47
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiondelta-6 fatty acid desaturase
Ec32 orthologEc-24_002300.1
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.4852006-CDS-H-elongata_contig76913:2757..29851622931173.4852006-CDS-H-elongata_contig76913:2757..2985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76913 2758..2985 +
1691679728.3453438-CDS-H-elongata_contig76913:2757..29851691679728.3453438-CDS-H-elongata_contig76913:2757..2985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76913 2758..2985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76913.15362.1prot_H-elongata_contig76913.15362.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76913 2758..2985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76913.15362.1

>prot_H-elongata_contig76913.15362.1 ID=prot_H-elongata_contig76913.15362.1|Name=mRNA_H-elongata_contig76913.15362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
QHPGGNVIFTHAGDDFTDIFAAFHPPTAYAVLEPFYIGDLDEKSAVAKPA
KQQVFERAYRELRAKLLTMGMFNAEW
back to top

mRNA from alignment at H-elongata_contig76913:2758..2985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76913.15362.1 ID=mRNA_H-elongata_contig76913.15362.1|Name=mRNA_H-elongata_contig76913.15362.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig76913:2758..2985+ (Himanthalia elongata Himel1 dioecious)
CAGCACCCGGGAGGCAACGTGATCTTCACGCACGCGGGCGACGACTTCAC GGACATCTTCGCCGCCTTCCACCCCCCGACGGCCTACGCTGTTCTAGAGC CCTTCTACATCGGAGACCTCGACGAGAAGTCGGCTGTCGCCAAGCCGGCG AAGCAGCAGGTGTTCGAGCGGGCTTACCGGGAACTGCGCGCGAAGCTTCT GACCATGGGGATGTTCAACGCAGAGTGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig76913:2758..2985+

>mRNA_H-elongata_contig76913.15362.1 ID=mRNA_H-elongata_contig76913.15362.1|Name=mRNA_H-elongata_contig76913.15362.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig76913:2758..2985+ (Himanthalia elongata Himel1 dioecious)
CAGCACCCGGGAGGCAACGTGATCTTCACGCACGCGGGCGACGACTTCAC
GGACATCTTCGCCGCCTTCCACCCCCCGACGGCCTACGCTGTTCTAGAGC
CCTTCTACATCGGAGACCTCGACGAGAAGTCGGCTGTCGCCAAGCCGGCG
AAGCAGCAGGTGTTCGAGCGGGCTTACCGGGAACTGCGCGCGAAGCTTCT
GACCATGGGGATGTTCAACGCAGAGTGGCAGCACCCGGGAGGCAACGTGA
TCTTCACGCACGCGGGCGACGACTTCACGGACATCTTCGCCGCCTTCCAC
CCCCCGACGGCCTACGCTGTTCTAGAGCCCTTCTACATCGGAGACCTCGA
CGAGAAGTCGGCTGTCGCCAAGCCGGCGAAGCAGCAGGTGTTCGAGCGGG
CTTACCGGGAACTGCGCGCGAAGCTTCTGACCATGGGGATGTTCAACGCA
GAGTGG
back to top