mRNA_H-elongata_contig7690.15361.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7690.15361.1
Unique NamemRNA_H-elongata_contig7690.15361.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7690.15361.1 vs. uniprot
Match: A0A6H5L6F7_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6F7_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 9.140e-76
Identity = 127/140 (90.71%), Postives = 132/140 (94.29%), Query Frame = 1
Query:    7 MDAAQLAQVESLCETLYNSVDEAARSHAQNQLLSLQASAERIPQCQYILDHSENAYALLLASSSLTRLISNHWNSFTPPQRVEIRNYILNYLGSVGPNLTDYVKTSLIQLLCRITKLGWFDDPRHREVVDAVMRFLQVRS 426
            MDAAQL QVE+LCETLYNS DEAARSHAQNQLLSLQ SAERIPQCQYILDHSENAYALLLASSSLTRLIS+HWN+FT PQRVEIRNYILNYLGSVGP LTDYV+TSLIQLLCRITKLGWFDD RHREVVDAVMRFLQ  +
Sbjct:    1 MDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQATN 140          
BLAST of mRNA_H-elongata_contig7690.15361.1 vs. uniprot
Match: A0A835YUW2_9STRA (RAN binding protein 16-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW2_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.590e-55
Identity = 96/141 (68.09%), Postives = 118/141 (83.69%), Query Frame = 1
Query:    4 AMDAAQLAQVESLCETLYNSVDEAARSHAQNQLLSLQASAERIPQCQYILDHSENAYALLLASSSLTRLISNHWNSFTPPQRVEIRNYILNYLGSVGPNLTDYVKTSLIQLLCRITKLGWFDDPRHREVVDAVMRFLQVRS 426
            AMDA QLAQVESLC+ LYN+ +EA R+ AQ QL+SLQ+S + IPQCQYILD+S+N YA LLAS+SLT+LI+ HWNSF+ PQRV+IRNYIL+YL S GP+L DYV T+L+QLLCRITKLGWFDD  HR++VD  ++FL   S
Sbjct:    2 AMDAQQLAQVESLCDALYNAANEAQRASAQQQLMSLQSSVDYIPQCQYILDNSQNPYARLLASNSLTQLITQHWNSFSVPQRVDIRNYILSYLASQGPSLKDYVVTALVQLLCRITKLGWFDDAAHRDLVDETLKFLGAPS 142          
BLAST of mRNA_H-elongata_contig7690.15361.1 vs. uniprot
Match: A0A7S1USY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USY4_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.680e-53
Identity = 89/144 (61.81%), Postives = 111/144 (77.08%), Query Frame = 1
Query:    7 MDAAQLAQVESLCETLYNSVDEAA-------RSHAQNQLLSLQASAERIPQCQYILDHSENAYALLLASSSLTRLISNHWNSFTPPQRVEIRNYILNYLGSVGPNLTDYVKTSLIQLLCRITKLGWFDDPRHREVVDAVMRFLQ 417
            MDA+QLAQVE+LCETLY+     +       R+ AQ +LLSLQ+SAE IPQCQYILD S + YA L+AS+SLT LI+++WNSFT  QR++IRNY+L YL + GP L D+V  SLI+L+CRITKLGWFDDP HRE+ D V +FLQ
Sbjct:    1 MDASQLAQVEALCETLYSGAPSTSEDGKPISRADAQARLLSLQSSAEYIPQCQYILDQSNSQYARLVASNSLTELITSYWNSFTVAQRIDIRNYVLGYLANRGPGLQDFVVVSLIKLVCRITKLGWFDDPTHRELADDVTKFLQ 144          
BLAST of mRNA_H-elongata_contig7690.15361.1 vs. uniprot
Match: A0A448YZH3_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZH3_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.620e-51
Identity = 85/144 (59.03%), Postives = 112/144 (77.78%), Query Frame = 1
Query:    7 MDAAQLAQVESLCETLYNSV-------DEAARSHAQNQLLSLQASAERIPQCQYILDHSENAYALLLASSSLTRLISNHWNSFTPPQRVEIRNYILNYLGSVGPNLTDYVKTSLIQLLCRITKLGWFDDPRHREVVDAVMRFLQ 417
            M+ AQLAQVE+LCETLY  V       ++  R  AQ +L+SLQ+SA+ IPQCQYIL+++++ YA L+A++SLT LI+ HWNSFT PQR++IRNY+L YL + GP L ++V  SLI+L+CRITKLGWFDDP HRE+ D V +FLQ
Sbjct:    1 MEPAQLAQVEALCETLYTGVPTSGENGEQITRQDAQQRLMSLQSSADFIPQCQYILENTKSQYARLVATNSLTELITTHWNSFTIPQRIDIRNYVLTYLANNGPQLENFVVVSLIKLVCRITKLGWFDDPVHRELADDVTKFLQ 144          
BLAST of mRNA_H-elongata_contig7690.15361.1 vs. uniprot
Match: A0A2D4BKK5_PYTIN (Exportin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKK5_PYTIN)

HSP 1 Score: 184 bits (468), Expect = 2.580e-51
Identity = 87/138 (63.04%), Postives = 111/138 (80.43%), Query Frame = 1
Query:    4 AMDAAQLAQVESLCETLYNSVDEAARSHAQNQLLSLQASAERIPQCQYILDHSENAYALLLASSSLTRLISNHWNSFTPPQRVEIRNYILNYLGSVGPNLTDYVKTSLIQLLCRITKLGWFDDPRHREVVDAVMRFLQ 417
            +MDAAQL  +E+LC  LY SV E+ R+HAQ  +L LQ+SAE IPQCQY+LD+S + YALL+ASSSLT+LI+ HWN+FT PQR++IRNY+L YL   GP L  +V TSL+Q+LCR+TK GWFDD +HRE+VD V +FLQ
Sbjct:  925 SMDAAQLQTLETLCSALYESVHESERAHAQQAVLVLQSSAEYIPQCQYVLDNSTSPYALLVASSSLTKLITTHWNNFTTPQRIDIRNYVLAYLAQKGPTLQKFVTTSLVQMLCRLTKFGWFDDEQHREIVDEVTKFLQ 1062          
BLAST of mRNA_H-elongata_contig7690.15361.1 vs. uniprot
Match: A0A8K1CLU5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLU5_PYTOL)

HSP 1 Score: 184 bits (466), Expect = 4.530e-51
Identity = 86/137 (62.77%), Postives = 109/137 (79.56%), Query Frame = 1
Query:    7 MDAAQLAQVESLCETLYNSVDEAARSHAQNQLLSLQASAERIPQCQYILDHSENAYALLLASSSLTRLISNHWNSFTPPQRVEIRNYILNYLGSVGPNLTDYVKTSLIQLLCRITKLGWFDDPRHREVVDAVMRFLQ 417
            MDA+QL  +E LC+ +Y SV+E+ R+HAQ  +L LQ+SAE IPQCQY+LDHS + YALL+AS+SLT+LI+ HWN+FT PQRV+IRNY+L YL   GP L  YV TSLIQ++CR+TK GWFDD  HRE+V  V +FLQ
Sbjct:    1 MDASQLQNLEVLCKAIYESVNESERTHAQQSVLILQSSAEYIPQCQYVLDHSASPYALLVASTSLTKLITTHWNNFTAPQRVDIRNYVLGYLAEKGPKLEKYVTTSLIQMVCRLTKFGWFDDEHHREIVSEVTKFLQ 137          
BLAST of mRNA_H-elongata_contig7690.15361.1 vs. uniprot
Match: A0A5D6XJM5_9STRA (Importin N-terminal domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJM5_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.160e-50
Identity = 86/137 (62.77%), Postives = 108/137 (78.83%), Query Frame = 1
Query:    7 MDAAQLAQVESLCETLYNSVDEAARSHAQNQLLSLQASAERIPQCQYILDHSENAYALLLASSSLTRLISNHWNSFTPPQRVEIRNYILNYLGSVGPNLTDYVKTSLIQLLCRITKLGWFDDPRHREVVDAVMRFLQ 417
            MDA QL  +E+LC+ LY S  EA R+ AQ  +L LQ+SAE IPQCQY+LDHS + YALL+AS+SLT+LI+ HWN+FTPPQRV+IRNY+L YL   GP L  +V TSLIQ++CR+TK GWFDD +HRE+V  V +FLQ
Sbjct:    1 MDATQLRNLETLCKVLYESAVEAERARAQQSVLVLQSSAEYIPQCQYVLDHSASPYALLVASNSLTKLITTHWNNFTPPQRVDIRNYVLGYLAQKGPTLEKFVTTSLIQMVCRLTKFGWFDDEQHREIVGEVTKFLQ 137          
BLAST of mRNA_H-elongata_contig7690.15361.1 vs. uniprot
Match: A0A484EDS8_BRELC (Importin N-terminal domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDS8_BRELC)

HSP 1 Score: 181 bits (459), Expect = 4.000e-50
Identity = 85/137 (62.04%), Postives = 109/137 (79.56%), Query Frame = 1
Query:    7 MDAAQLAQVESLCETLYNSVDEAARSHAQNQLLSLQASAERIPQCQYILDHSENAYALLLASSSLTRLISNHWNSFTPPQRVEIRNYILNYLGSVGPNLTDYVKTSLIQLLCRITKLGWFDDPRHREVVDAVMRFLQ 417
            MDA QL ++E+LC  LY S +E  R+HAQ  +L LQ+SAE IPQCQY+LD+S + YALL+AS+SLT+LI+ HWN+FTPPQRV+IRNY+L YL   GP L  +V TSLIQ++CR+TK GWFDD +HRE+V  V +FLQ
Sbjct:    1 MDANQLRELETLCRVLYESTNEVERAHAQQAVLILQSSAEYIPQCQYVLDNSSSPYALLVASNSLTKLITTHWNNFTPPQRVDIRNYVLGYLAQHGPTLEKFVTTSLIQMVCRLTKYGWFDDEQHREIVTEVTKFLQ 137          
BLAST of mRNA_H-elongata_contig7690.15361.1 vs. uniprot
Match: D0P208_PHYIT (Exportin-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P208_PHYIT)

HSP 1 Score: 177 bits (449), Expect = 2.500e-49
Identity = 84/137 (61.31%), Postives = 109/137 (79.56%), Query Frame = 1
Query:    7 MDAAQLAQVESLCETLYNSVDEAARSHAQNQLLSLQASAERIPQCQYILDHSENAYALLLASSSLTRLISNHWNSFTPPQRVEIRNYILNYLGSVGPNLTDYVKTSLIQLLCRITKLGWFDDPRHREVVDAVMRFLQ 417
            MDA QL ++E+LC  LY S +E  R+HAQ  +L LQ+SAE IPQCQY+LD+S + YALL+AS+SLT+LI++HWN+FT PQRV+IRNY+L YL   GP L  +V TSLIQ++CR+TK GWFDD +HRE+V  V +FLQ
Sbjct:    1 MDANQLRELETLCRVLYESGNEVERAHAQQAVLILQSSAEYIPQCQYVLDNSSSPYALLVASTSLTKLITSHWNNFTTPQRVDIRNYVLGYLAQKGPTLEKFVTTSLIQMVCRLTKYGWFDDEQHREIVAEVTKFLQ 137          
BLAST of mRNA_H-elongata_contig7690.15361.1 vs. uniprot
Match: H3GGA7_PHYRM (Importin N-terminal domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GGA7_PHYRM)

HSP 1 Score: 177 bits (450), Expect = 6.540e-49
Identity = 84/137 (61.31%), Postives = 110/137 (80.29%), Query Frame = 1
Query:    7 MDAAQLAQVESLCETLYNSVDEAARSHAQNQLLSLQASAERIPQCQYILDHSENAYALLLASSSLTRLISNHWNSFTPPQRVEIRNYILNYLGSVGPNLTDYVKTSLIQLLCRITKLGWFDDPRHREVVDAVMRFLQ 417
            MDA QL ++E+LC  LY S +E+ R+HAQ  +L LQ+SAE IPQCQY+LD+S + YALL+AS+SLT+LI++HWN+FT PQRV+IRNY+L YL   GP L  +V TSLIQ++CR+TK GWFDD +HRE+V  V +FLQ
Sbjct:    1 MDANQLRELETLCRVLYESGNESERAHAQQAVLILQSSAEYIPQCQYVLDNSSSPYALLVASTSLTKLITSHWNNFTTPQRVDIRNYVLGYLAQKGPTLEKFVTTSLIQMVCRLTKYGWFDDEQHREIVAEVTKFLQ 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7690.15361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6F7_9PHAE9.140e-7690.71Importin N-terminal domain-containing protein n=2 ... [more]
A0A835YUW2_9STRA1.590e-5568.09RAN binding protein 16-like protein n=1 Tax=Tribon... [more]
A0A7S1USY4_9STRA1.680e-5361.81Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A448YZH3_9STRA1.620e-5159.03Importin N-terminal domain-containing protein n=1 ... [more]
A0A2D4BKK5_PYTIN2.580e-5163.04Exportin-like protein n=1 Tax=Pythium insidiosum T... [more]
A0A8K1CLU5_PYTOL4.530e-5162.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XJM5_9STRA2.160e-5062.77Importin N-terminal domain-containing protein (Fra... [more]
A0A484EDS8_BRELC4.000e-5062.04Importin N-terminal domain-containing protein n=1 ... [more]
D0P208_PHYIT2.500e-4961.31Exportin-like protein n=1 Tax=Phytophthora infesta... [more]
H3GGA7_PHYRM6.540e-4961.31Importin N-terminal domain-containing protein n=22... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7690contigH-elongata_contig7690:418..849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue5e-67
Seed eggNOG ortholog2880.D7G3N6
Preferred nameXPO7
KEGG koko:K18460
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0012505,GO:0015031,GO:0015833,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0031267,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051020,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsKOG1410@1,KOG1410@2759
Ec32 ortholog descriptionRAN binding protein 16-like, protein transporter
Ec32 orthologEc-00_006640.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.4251316-CDS-H-elongata_contig7690:417..8431622931173.4251316-CDS-H-elongata_contig7690:417..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7690 418..843 -
1691679728.3188603-CDS-H-elongata_contig7690:417..8431691679728.3188603-CDS-H-elongata_contig7690:417..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7690 418..843 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.4395597-UTR-H-elongata_contig7690:843..8491622931173.4395597-UTR-H-elongata_contig7690:843..849Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7690 844..849 -
1691679728.3309093-UTR-H-elongata_contig7690:843..8491691679728.3309093-UTR-H-elongata_contig7690:843..849Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7690 844..849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7690.15361.1prot_H-elongata_contig7690.15361.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7690 418..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7690.15361.1

>prot_H-elongata_contig7690.15361.1 ID=prot_H-elongata_contig7690.15361.1|Name=mRNA_H-elongata_contig7690.15361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
MDAAQLAQVESLCETLYNSVDEAARSHAQNQLLSLQASAERIPQCQYILD
HSENAYALLLASSSLTRLISNHWNSFTPPQRVEIRNYILNYLGSVGPNLT
DYVKTSLIQLLCRITKLGWFDDPRHREVVDAVMRFLQVRSRY
back to top

mRNA from alignment at H-elongata_contig7690:418..849-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7690.15361.1 ID=mRNA_H-elongata_contig7690.15361.1|Name=mRNA_H-elongata_contig7690.15361.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig7690:418..849- (Himanthalia elongata Himel1 dioecious)
CAGGCCATGGATGCGGCTCAGCTTGCTCAGGTTGAGTCTCTGTGCGAGAC TCTGTACAACTCGGTCGACGAGGCCGCGCGCTCTCACGCCCAGAATCAGC TCCTTAGCCTTCAGGCATCGGCGGAGCGCATCCCTCAGTGCCAGTACATC CTCGACCACTCAGAGAATGCTTACGCCCTGCTGTTGGCCTCGAGCAGCCT CACCCGGCTGATCTCCAATCACTGGAACAGCTTTACCCCACCCCAACGGG TTGAGATTCGCAACTACATCCTCAATTACCTGGGGAGCGTTGGGCCGAAC TTGACGGACTACGTCAAGACCAGCCTGATTCAGCTGCTGTGCAGGATCAC CAAGCTCGGGTGGTTCGACGACCCACGGCACCGCGAAGTTGTGGACGCCG TTATGAGGTTTCTTCAGGTGAGGTCTCGATAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7690:418..849-

>mRNA_H-elongata_contig7690.15361.1 ID=mRNA_H-elongata_contig7690.15361.1|Name=mRNA_H-elongata_contig7690.15361.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig7690:418..849- (Himanthalia elongata Himel1 dioecious)
ATGGATGCGGCTCAGCTTGCTCAGGTTGAGTCTCTGTGCGAGACTCTGTA
CAACTCGGTCGACGAGGCCGCGCGCTCTCACGCCCAGAATCAGCTCCTTA
GCCTTCAGGCATCGGCGGAGCGCATCCCTCAGTGCCAGTACATCCTCGAC
CACTCAGAGAATGCTTACGCCCTGCTGTTGGCCTCGAGCAGCCTCACCCG
GCTGATCTCCAATCACTGGAACAGCTTTACCCCACCCCAACGGGTTGAGA
TTCGCAACTACATCCTCAATTACCTGGGGAGCGTTGGGCCGAACTTGACG
GACTACGTCAAGACCAGCCTGATTCAGCTGCTGTGCAGGATCACCAAGCT
CGGGTGGTTCGACGACCCACGGCACCGCGAAGTTGTGGACGCCGTTATGA
GGTTTCTTCAGGTGAGGTCTCGATATATGGATGCGGCTCAGCTTGCTCAG
GTTGAGTCTCTGTGCGAGACTCTGTACAACTCGGTCGACGAGGCCGCGCG
CTCTCACGCCCAGAATCAGCTCCTTAGCCTTCAGGCATCGGCGGAGCGCA
TCCCTCAGTGCCAGTACATCCTCGACCACTCAGAGAATGCTTACGCCCTG
CTGTTGGCCTCGAGCAGCCTCACCCGGCTGATCTCCAATCACTGGAACAG
CTTTACCCCACCCCAACGGGTTGAGATTCGCAACTACATCCTCAATTACC
TGGGGAGCGTTGGGCCGAACTTGACGGACTACGTCAAGACCAGCCTGATT
CAGCTGCTGTGCAGGATCACCAAGCTCGGGTGGTTCGACGACCCACGGCA
CCGCGAAGTTGTGGACGCCGTTATGAGGTTTCTTCAGGTGAGGTCTCGAT
AT
back to top