mRNA_H-elongata_contig7648.15321.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A813BMH3_9DINO (RVE8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BMH3_9DINO) HSP 1 Score: 68.9 bits (167), Expect = 2.090e-12 Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 37 GRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
GRW+KEEH+AFL GLR G W+ I + FV TRSV QIRTHAQK+F
Sbjct: 13 GRWSKEEHDAFLQGLRTVGNKWKEIHDHFVPTRSVVQIRTHAQKYF 58
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: W7TGG4_9STRA (Myb-like dna-binding shaqkyf class family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGG4_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 5.010e-12 Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 28 KCKGRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
+C+GRWTK+EH AFL GLR G+DW I + V TRS Q+R+HAQK+F
Sbjct: 4 RCQGRWTKQEHLAFLRGLRVYGRDWNKI-QRLVGTRSQPQVRSHAQKYF 51
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A3Q7GG85_SOLLC (Uncharacterized protein n=3 Tax=Solanum subgen. Lycopersicon TaxID=49274 RepID=A0A3Q7GG85_SOLLC) HSP 1 Score: 66.2 bits (160), Expect = 8.100e-12 Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 22 SRKCKGRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
SRK +G+WT+EEHEAFL+G+ G++W + + FV +R+ TQI +HAQK+F
Sbjct: 122 SRKQEGKWTEEEHEAFLIGMEKVGRNWTRVSKEFVLSRTPTQITSHAQKYF 172
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: D7G4K1_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K1_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 1.430e-11 Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 37 GRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
GRWTK+EH FL+GL GKDW I FVF+R+ TQIRTHAQK+F
Sbjct: 57 GRWTKKEHADFLVGLEACGKDWMEISCHFVFSRTATQIRTHAQKYF 102
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A835ZEA3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA3_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 3.620e-11 Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1
Query: 37 GRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
GRWT EEHE FL GLR+ K W+ I + + TR+V Q+RTHAQK F
Sbjct: 2 GRWTAEEHERFLQGLREHNKQWKLIAD-LIRTRTVVQVRTHAQKHF 46
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: M1DMJ7_SOLTU (Myb family transcription factor n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1DMJ7_SOLTU) HSP 1 Score: 63.5 bits (153), Expect = 1.110e-10 Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 22 SRKCKGRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
SRK +G+WT++EHEAFL+GL G++W + + FV +R+ TQI +HAQK+F
Sbjct: 143 SRKQEGKWTEDEHEAFLIGLDKVGRNWTRVSKEFVPSRTPTQITSHAQKYF 193
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A1E7FKC4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKC4_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.510e-10 Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 40 RWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
RWTKEEH+AFL GL+ GK+W+ + V TR+V Q RTHAQK+F
Sbjct: 1 RWTKEEHDAFLSGLKMYGKEWKKVAAK-VKTRTVVQTRTHAQKYF 44
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A7S3P0S3_EUPCR (Hypothetical protein n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3P0S3_EUPCR) HSP 1 Score: 60.5 bits (145), Expect = 2.320e-10 Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = 1
Query: 28 KCKGRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
K +GRWT EEH+ F++GL GK+W+ + E+F+ TR+ +QIR+HAQK+F
Sbjct: 21 KAEGRWTNEEHKLFIVGLGKFGKNWKRL-EAFIETRTSSQIRSHAQKYF 68
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: G4ZZP8_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZZP8_PHYSP) HSP 1 Score: 58.9 bits (141), Expect = 3.130e-10 Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 37 GRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKF 171
GRWTK EHE FL GL+ GK W+ I S V TR++ QIRTHAQK+
Sbjct: 19 GRWTKREHELFLEGLQRFGKSWKKIS-SLVHTRTLVQIRTHAQKY 62
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A6P6TL54_COFAR (transcription factor SRM1-like n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6TL54_COFAR) HSP 1 Score: 62.0 bits (149), Expect = 3.850e-10 Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 13 ERRSRKCKGRWTKEEHEAFLMGLRDRGK-DWEAIGESFVFTRSVTQIRTHAQKFF 174
E R +K RWTKEEHE FL+GL+ GK DW +I + V T++ TQ+ +HAQK+F
Sbjct: 113 ENRQKKKGTRWTKEEHENFLLGLKKYGKGDWRSISRNSVLTKTPTQVASHAQKYF 167 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7648.15321.1 >prot_H-elongata_contig7648.15321.1 ID=prot_H-elongata_contig7648.15321.1|Name=mRNA_H-elongata_contig7648.15321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp GGCWERRSRKCKGRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIback to top mRNA from alignment at H-elongata_contig7648:2038..2211+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7648.15321.1 ID=mRNA_H-elongata_contig7648.15321.1|Name=mRNA_H-elongata_contig7648.15321.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig7648:2038..2211+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7648:2038..2211+ >mRNA_H-elongata_contig7648.15321.1 ID=mRNA_H-elongata_contig7648.15321.1|Name=mRNA_H-elongata_contig7648.15321.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig7648:2038..2211+ (Himanthalia elongata Himel1 dioecious)back to top |